Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Forward (+)

3998891 .. 4002336

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03190.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTATCATCCCACTAGAGGCGGTGTTCGTGGCGGTCGAGATCAATTCAGTTGGGATGATGTTAAGGTTGATAAACATCGAGAGAACTATCTTGGTCACAGCATCAAGGCGCCTGTGGGAAGATGGCAAAAAGGTAAAGATCTACACTGGTATGCTAGAGACAAAAAAGCTCAGAAGGCAGAAATGGATGCTGCAAAAGAAGAGATCAAGAGAATTAAGGAAGAGGAGGAGCAGGCTATGAGGGAGGCTCTTGGCTTAGCTCCTAAGCGTGCAAGCCGTGCTCAAGGTAGTCGGCTTGATAAGCATGAGTTTTCGGAACTTGTGAAACGAGGCTCGACTGCAGAGGACGTAGGTGAAGGGCACGCTGAAGCAGCACGTGTGCATGGTCTTGGATTTGCAAGAGCACCCTGCCCTTGGGATGAGTCAAGTTCTCTTCATCCAACAGCGAAGGATGTTCCACCTGAAATGGGAAAGTCGGATGTTCCTAATTCACCACCAAAAGAAAAAGTTGAAGAGGAGCTAGAGGATGAAAGCAGTCGAAAGAAGAGGAGGCGTGATGAGAGAAAGCAGGAGAAACATGAGAGGCGTGAAAAGCATGGGAAACGTCCCTCAGATGAGAGGAGGAAAGACAGGAGACACAAGGAGAAGAGAAGACATGGTTCCGACGCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

225

Amino Acids

25.94

Weight (kDa)

9.5

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	2 cut(s)	21, 33
AcuI	CTGAAG	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	110, 666
AfiI	CCNNNNNNNGG	3 cut(s)	17, 414, 467
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	512
AluBI	AGCT	3 cut(s)	170, 260, 520
AluI	AGCT	3 cut(s)	170, 260, 520
Alw21I	GWGCWC	2 cut(s)	283, 406
Alw26I	GTCTC	2 cut(s)	153, 628
ApeKI	GCWGC	2 cut(s)	191, 371
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	365, 483
BaeGI	GKGCMC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	283, 406
BbvI	GCAGC	2 cut(s)	178, 383
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	153, 628
BfaI	CTAG	3 cut(s)	15, 156, 521
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	2 cut(s)	192, 372
BlpI	GCTNAGC	1 cut(s)	256
BlsI	GCNGC	2 cut(s)	193, 373
BmiI	GGNNCC	2 cut(s)	111, 661
BmsI	GCATC	2 cut(s)	111, 178
BpiI	GAAGAC	1 cut(s)	658
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	267
BsaAI	YACGTR	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	75
BsaHI	GRCGYC	2 cut(s)	110, 666
BsaJI	CCNNGG	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 414, 467
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	8 cut(s)	7, 61, 193, 424, 436, 457, 484, 532
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	17, 414, 467
BseMII	CTCAG	2 cut(s)	185, 624
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	5 cut(s)	239, 242, 530, 562, 634
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	178, 383
Bsh1285I	CGRYCG	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	283, 406
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	17, 414, 467
BsmAI	GTCTC	2 cut(s)	153, 628
BsmFI	GGGAC	1 cut(s)	591
Bsp1286I	GDGCHC	3 cut(s)	283, 363, 406
Bsp143I	GATC	3 cut(s)	40, 139, 204
Bsp1720I	GCTNAGC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	21, 33
BspCNI	CTCAG	2 cut(s)	184, 623
BspLI	GGNNCC	2 cut(s)	111, 661
BspMAI	CTGCAG	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	3 cut(s)	40, 139, 204
BssNI	GRCGYC	2 cut(s)	110, 666
BssT1I	CCWWGG	1 cut(s)	413
Bst6I	CTCTTC	6 cut(s)	195, 216, 438, 507, 539, 641
BstACI	GRCGYC	2 cut(s)	110, 666
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	234, 270, 274, 363
BstDEI	CTNAG	4 cut(s)	171, 256, 264, 610
BstF5I	GGATG	8 cut(s)	7, 61, 193, 424, 436, 457, 484, 532
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	43, 142, 207
BstMAI	GTCTC	2 cut(s)	153, 628
BstMBI	GATC	3 cut(s)	40, 139, 204
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 278, 301, 371, 592
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	178, 383
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BtsCI	GGATG	8 cut(s)	7, 61, 193, 424, 436, 457, 484, 532
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	234, 270, 274, 363
CfoI	GCGC	1 cut(s)	112
CviAII	CATG	5 cut(s)	305, 383, 578, 596, 656
CviJI	RGCY	9 cut(s)	170, 236, 248, 255, 260, 276, 295, 333, 520
CviKI_1	RGCY	9 cut(s)	170, 236, 248, 255, 260, 276, 295, 333, 520
DdeI	CTNAG	4 cut(s)	171, 256, 264, 610
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	3 cut(s)	42, 141, 206
DpnII	GATC	3 cut(s)	40, 139, 204
Eam1104I	CTCTTC	6 cut(s)	195, 216, 438, 507, 539, 641
EarI	CTCTTC	6 cut(s)	195, 216, 438, 507, 539, 641
Eco130I	CCWWGG	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	387
Eco72I	CACGTG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	413
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	5 cut(s)	308, 386, 581, 599, 659
FaiI	YATR	7 cut(s)	153, 239, 306, 384, 579, 597, 657
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	304, 382, 577, 595, 655
Fnu4HI	GCNGC	2 cut(s)	192, 372
FokI	GGATG	7 cut(s)	68, 200, 423, 431, 464, 491, 539
Fsp4HI	GCNGC	2 cut(s)	192, 372
FspBI	CTAG	3 cut(s)	15, 156, 521
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	192, 372
HaeII	RGCGCY	1 cut(s)	113
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 666
Hin1II	CATG	5 cut(s)	308, 386, 581, 599, 659
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	2 cut(s)	365, 483
Hpy188I	TCNGA	5 cut(s)	174, 316, 478, 613, 664
Hpy188III	TCNNGA	3 cut(s)	38, 80, 208
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	3 cut(s)	169, 350, 442
HpyCH4IV	ACGT	3 cut(s)	348, 376, 604
HpyCH4V	TGCA	5 cut(s)	194, 272, 341, 382, 398
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 278, 301, 371, 592
HpyF3I	CTNAG	4 cut(s)	171, 256, 264, 610
HpySE526I	ACGT	3 cut(s)	348, 376, 604
Hsp92I	GRCGYC	2 cut(s)	110, 666
Hsp92II	CATG	5 cut(s)	308, 386, 581, 599, 659
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	40, 139, 204
LmnI	GCTCC	3 cut(s)	229, 265, 517
LpnPI	CCDG	7 cut(s)	126, 133, 218, 421, 474, 554, 616
Lsp1109I	GCAGC	2 cut(s)	178, 383
LweI	GCATC	2 cut(s)	111, 178
MaeI	CTAG	3 cut(s)	15, 156, 521
MaeII	ACGT	3 cut(s)	348, 376, 604
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	3 cut(s)	42, 141, 206
MboI	GATC	3 cut(s)	40, 139, 204
MboII	GAAGA	8 cut(s)	132, 212, 233, 425, 524, 556, 658, 663
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	3 cut(s)	283, 363, 406
MluCI	AATT	3 cut(s)	44, 213, 487
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	2 cut(s)	456, 464
MseI	TTAA	2 cut(s)	63, 216
MslI	CAYNNNNRTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	5 cut(s)	176, 278, 301, 371, 592
NarI	GGCGCC	1 cut(s)	110
NdeII	GATC	3 cut(s)	40, 139, 204
NlaIII	CATG	5 cut(s)	308, 386, 581, 599, 659
NlaIV	GGNNCC	2 cut(s)	111, 661
NmuCI	GTSAC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	193, 373
PleI	GAGTC	1 cut(s)	430
PluTI	GGCGCC	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	377
PspCI	CACGTG	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	111, 661
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	63, 216
SatI	GCNGC	2 cut(s)	192, 372
Sau3AI	GATC	3 cut(s)	40, 139, 204
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	3 cut(s)	283, 363, 406
SfaNI	GCATC	2 cut(s)	111, 178
SfcI	CTRYAG	1 cut(s)	339
SfoI	GGCGCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	44, 213, 487
SsiI	CCGC	2 cut(s)	21, 33
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	3 cut(s)	15, 156, 521
StyI	CCWWGG	1 cut(s)	413
TaiI	ACGT	3 cut(s)	351, 379, 607
TaqI	TCGA	4 cut(s)	37, 79, 335, 538
TasI	AATT	3 cut(s)	44, 213, 487
Tru1I	TTAA	2 cut(s)	63, 216
Tru9I	TTAA	2 cut(s)	63, 216
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	191, 371
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	425, 543
TspRI	CASTG	1 cut(s)	152
XspI	CTAG	3 cut(s)	15, 156, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.