Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Forward (+)

77638640 .. 77639889

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG564500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTAAGATTGACAAGCATCTTGAGAATTATCTTGGCCACAGTATCAAGGCCCCTGTTGGTAGATGGCAAAAAGGTAAGGATCTACACTGGTATAACAGAGACAAAAAAAACATGGAGTGCCGAAATGGTTGCAGCAAAAGAAGAGATTCAAAGAATTAAGGAGGAAGATGATCAGGCTATGAGGGAGGCTCTTGGACTAGCTCCTAAGCGTGCAAACCAAGCTCAAGGTAATCGACTTGATAAGCATGAGTTCTCAGAACTTGTGAAGCGAGGTTCTACTGCAGAGGACTTGGGTGAAAGGCATGCAGAAGCAGCACACATACATGGTTTTGGTTTTTCAAGAGCACCTGCCCCTTGGGATGATTCAACTTCTCTTCAACCTACAGTCAATGGAGGTGCACCTGAAATAGGGGATATTCCTGCGCCTAAGCTTCCACCAAAAGAAACTGTTGAAGAGGAGTCCGAGGATGAAAGCAGTCGGAAGAAAAGGAGGCATGAAGAGAGGAAGCACAAGAAACATGAGAGGCGTGAGAAACGCGAGAAGCATGAAAAAGGGCATTCCTCAGACATGAGAAAACATAGGAACGACAAGGATAAGAGGAGATGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

204

Amino Acids

23.33

Weight (kDa)

9.47

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccII	CGCG	1 cut(s)	540
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	152, 342, 369, 380, 455
AluBI	AGCT	3 cut(s)	203, 224, 433
AluI	AGCT	3 cut(s)	203, 224, 433
Alw21I	GWGCWC	2 cut(s)	349, 403
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	36, 50
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	134, 314
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	349, 403
BbvI	GCAGC	2 cut(s)	146, 326
BccI	CCATC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	282, 384
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	135, 315
BlsI	GCNGC	2 cut(s)	136, 316
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu10I	CCTNAGC	2 cut(s)	207, 429
BpuEI	CTTGAG	2 cut(s)	43, 210
BsaJI	CCNNGG	2 cut(s)	356, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	356, 465
BseGI	GGATG	2 cut(s)	367, 475
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	270, 579
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	146, 326
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	38, 52
BsiHKAI	GWGCWC	2 cut(s)	349, 403
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	38, 52
Bsp1286I	GDGCHC	2 cut(s)	349, 403
Bsp143I	GATC	2 cut(s)	81, 172
BspANI	GGCC	2 cut(s)	38, 52
BspCNI	CTCAG	2 cut(s)	269, 578
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	356, 465
BssMI	GATC	2 cut(s)	81, 172
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	43, 388, 451
Bst6I	CTCTTC	4 cut(s)	138, 381, 450, 495
BstC8I	GCNNGC	2 cut(s)	213, 306
BstDEI	CTNAG	5 cut(s)	207, 256, 429, 565, 612
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	367, 475
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	84, 175
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	81, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 314
BstNSI	RCATGY	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	282, 384
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	146, 326
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	38, 52
BtsCI	GGATG	2 cut(s)	367, 475
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	213, 306
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	51
CviAII	CATG	8 cut(s)	114, 248, 305, 326, 497, 521, 548, 571
CviJI	RGCY	7 cut(s)	38, 52, 179, 191, 203, 224, 433
CviKI_1	RGCY	7 cut(s)	38, 52, 179, 191, 203, 224, 433
DdeI	CTNAG	5 cut(s)	207, 256, 429, 565, 612
DpnI	GATC	2 cut(s)	83, 174
DpnII	GATC	2 cut(s)	81, 172
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	4 cut(s)	138, 381, 450, 495
EarI	CTCTTC	4 cut(s)	138, 381, 450, 495
Eco130I	CCWWGG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	8 cut(s)	117, 251, 308, 329, 500, 524, 551, 574
FatI	CATG	8 cut(s)	113, 247, 304, 325, 496, 520, 547, 570
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	135, 315
FokI	GGATG	2 cut(s)	374, 482
Fsp4HI	GCNGC	2 cut(s)	135, 315
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	2 cut(s)	135, 315
HaeIII	GGCC	2 cut(s)	38, 52
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	8 cut(s)	117, 251, 308, 329, 500, 524, 551, 574
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	3 cut(s)	148, 365, 461
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	4 cut(s)	259, 466, 483, 568
Hpy188III	TCNNGA	2 cut(s)	22, 342
Hpy8I	GTNNAC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	43, 388, 451
HpyCH4V	TGCA	5 cut(s)	134, 215, 284, 308, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 314
HpyF3I	CTNAG	5 cut(s)	207, 256, 429, 565, 612
Hsp92II	CATG	8 cut(s)	117, 251, 308, 329, 500, 524, 551, 574
HspAI	GCGC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	81, 172
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	68, 75, 161, 363, 417, 435
Lsp1109I	GCAGC	2 cut(s)	146, 326
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	200
MalI	GATC	2 cut(s)	83, 174
MboI	GATC	2 cut(s)	81, 172
MboII	GAAGA	6 cut(s)	155, 179, 368, 467, 496, 512
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	349, 403
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	27, 156
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	5, 159
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	559
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	221, 314
NdeII	GATC	2 cut(s)	81, 172
NlaIII	CATG	8 cut(s)	117, 251, 308, 329, 500, 524, 551, 574
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	148, 365
PkrI	GCNGC	2 cut(s)	136, 316
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	5, 159
SatI	GCNGC	2 cut(s)	135, 315
Sau3AI	GATC	2 cut(s)	81, 172
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	2 cut(s)	349, 403
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	2 cut(s)	282, 384
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	22, 225
SmoI	CTYRAG	2 cut(s)	22, 225
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	2 cut(s)	27, 156
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	43, 388, 451
TaqI	TCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	27, 156
TfiI	GAWTC	2 cut(s)	148, 365
Tru1I	TTAA	2 cut(s)	5, 159
Tru9I	TTAA	2 cut(s)	5, 159
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	134, 314
TspDTI	ATGAA	3 cut(s)	486, 513, 564
TspRI	CASTG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	408
XceI	RCATGY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.