Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Forward (+)

9585728 .. 9590578

Gene Structure 4851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTATCATCCTACTAGAGGTGGAGTTCGTGGTGGTCGAGATCAGTTTAGTTGGGACGATGTTAAGGTTGACAAGCACCGTGAGAATTACCTTGGCCACAGTATCAAGGCCCCTGTTGGTAGATGGCAAAAAGGTAAGGATCTAAACTGGTATAGCAGAGACAAAAAAACATTGAGTGCTGAAATGGATGCTGCAAAAGAGGAGATTAAAAGAATTAAGGAGGAAGAGGATCAGGCTATGAGGGAGGCTCTTGGCTTAGCTCCTAAGCGTGCAAACCGAGCTCAAGGCAATCGGCTTGATAAGCATGAGCTCTCAGAACTTGTGAAGCGAGGTTCTACTGCAGAGGACTTGGGTGAAGGGCATGCTGAAGCAGCACACGTACATGGTCTTGGTTTTTCAAGAGCACCTGTCCCTTGGGATGATTCAACTTCTCTTCAGCCTTCAGTCAAGGGGGGTGCAAGTGTACCTAAAATGGAAGATTTTCCTGTGCCTAAACTTACACCAAAAGAAAACGTTGAAGAGGAGTCCGAGGATGAAAGCAGTCGAAGGAAAAGGAGGCGTGAAGAGAGGAAGCACGAGAAACATGAGAGGCGTGAGAAACGTGAGAAGCATGAAAAAGGGCATTCCTCAGACGAGAGGAAACATAGGAAAGACAAGGAGAAGAGGAGACATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

226

Amino Acids

26.08

Weight (kDa)

9.48

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	2 cut(s)	147, 237
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	3 cut(s)	387, 419, 426
AfaI	GTAC	2 cut(s)	381, 465
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	399, 426, 518
AluBI	AGCT	3 cut(s)	260, 281, 310
AluI	AGCT	3 cut(s)	260, 281, 310
Alw21I	GWGCWC	3 cut(s)	283, 312, 406
Alw26I	GTCTC	2 cut(s)	153, 661
AlwI	GGATC	2 cut(s)	147, 237
AoxI	GGCC	2 cut(s)	94, 108
ApeKI	GCWGC	2 cut(s)	191, 371
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	96
BanII	GRGCYC	2 cut(s)	283, 312
BauI	CACGAG	1 cut(s)	575
Bbv12I	GWGCWC	3 cut(s)	283, 312, 406
BbvI	GCAGC	2 cut(s)	178, 383
BccI	CCATC	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	153, 661
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	192, 372
BlpI	GCTNAGC	1 cut(s)	256
BlsI	GCNGC	2 cut(s)	193, 373
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	267
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	91, 413, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	91, 413, 528
BseGI	GGATG	4 cut(s)	7, 193, 424, 538
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	2 cut(s)	327, 642
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	2 cut(s)	215, 536
BseXI	GCAGC	2 cut(s)	178, 383
BshFI	GGCC	2 cut(s)	96, 110
BsiHKAI	GWGCWC	3 cut(s)	283, 312, 406
BslFI	GGGAC	2 cut(s)	68, 395
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	2 cut(s)	153, 661
BsmFI	GGGAC	2 cut(s)	68, 395
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	96, 110
Bsp1286I	GDGCHC	3 cut(s)	283, 312, 406
Bsp143I	GATC	3 cut(s)	40, 139, 229
Bsp1720I	GCTNAGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	96, 110
BspCNI	CTCAG	2 cut(s)	326, 641
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	147, 237
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	91, 413, 528
BssMI	GATC	3 cut(s)	40, 139, 229
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	2 cut(s)	91, 413
Bst2BI	CACGAG	1 cut(s)	575
Bst4CI	ACNGT	2 cut(s)	80, 101
Bst6I	CTCTTC	5 cut(s)	219, 438, 513, 558, 656
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	270, 363
BstDEI	CTNAG	5 cut(s)	256, 264, 313, 628, 675
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	7, 193, 424, 538
BstKTI	GATC	3 cut(s)	43, 142, 232
BstMAI	GTCTC	2 cut(s)	153, 661
BstMBI	GATC	3 cut(s)	40, 139, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 301, 371
BstNSI	RCATGY	2 cut(s)	365, 674
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	178, 383
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	96, 110
BtsCI	GGATG	4 cut(s)	7, 193, 424, 538
Cac8I	GCNNGC	2 cut(s)	270, 363
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	380, 464
CviAII	CATG	6 cut(s)	305, 362, 383, 584, 611, 671
CviQI	GTAC	2 cut(s)	380, 464
DdeI	CTNAG	5 cut(s)	256, 264, 313, 628, 675
DpnI	GATC	3 cut(s)	42, 141, 231
DpnII	GATC	3 cut(s)	40, 139, 229
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	5 cut(s)	219, 438, 513, 558, 656
EarI	CTCTTC	5 cut(s)	219, 438, 513, 558, 656
Ecl136II	GAGCTC	2 cut(s)	281, 310
Eco130I	CCWWGG	2 cut(s)	91, 413
Eco24I	GRGCYC	2 cut(s)	283, 312
Eco53kI	GAGCTC	2 cut(s)	281, 310
Eco57I	CTGAAG	3 cut(s)	387, 419, 426
EcoICRI	GAGCTC	2 cut(s)	281, 310
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	91, 413
EcoT38I	GRGCYC	2 cut(s)	283, 312
ErhI	CCWWGG	2 cut(s)	91, 413
FaeI	CATG	6 cut(s)	308, 365, 386, 587, 614, 674
FaiI	YATR	9 cut(s)	153, 239, 306, 363, 384, 585, 612, 645, 672
FaqI	GGGAC	2 cut(s)	68, 395
FatI	CATG	6 cut(s)	304, 361, 382, 583, 610, 670
Fnu4HI	GCNGC	2 cut(s)	192, 372
FokI	GGATG	3 cut(s)	200, 431, 545
FriOI	GRGCYC	2 cut(s)	283, 312
Fsp4HI	GCNGC	2 cut(s)	192, 372
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	192, 372
HaeIII	GGCC	2 cut(s)	96, 110
Hin1II	CATG	6 cut(s)	308, 365, 386, 587, 614, 674
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	422, 524
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	70, 464
Hpy188I	TCNGA	3 cut(s)	316, 529, 631
Hpy188III	TCNNGA	2 cut(s)	38, 399
Hpy8I	GTNNAC	2 cut(s)	70, 464
HpyAV	CCTTC	3 cut(s)	350, 450, 540
HpyCH4III	ACNGT	2 cut(s)	80, 101
HpyCH4IV	ACGT	3 cut(s)	378, 513, 601
HpyCH4V	TGCA	4 cut(s)	194, 272, 341, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 301, 371
HpyF3I	CTNAG	5 cut(s)	256, 264, 313, 628, 675
HpySE526I	ACGT	3 cut(s)	378, 513, 601
Hsp92II	CATG	6 cut(s)	308, 365, 386, 587, 614, 674
Kzo9I	GATC	3 cut(s)	40, 139, 229
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	126, 133, 218, 420, 498
Lsp1109I	GCAGC	2 cut(s)	178, 383
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	3 cut(s)	378, 513, 601
MalI	GATC	3 cut(s)	42, 141, 231
MboI	GATC	3 cut(s)	40, 139, 229
MboII	GAAGA	6 cut(s)	236, 425, 488, 530, 575, 673
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	3 cut(s)	283, 312, 406
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	85, 213
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	533
Mox20I	TGGCCA	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	3 cut(s)	63, 207, 216
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	622
MwoI	GCNNNNNNNGC	3 cut(s)	278, 301, 371
NdeII	GATC	3 cut(s)	40, 139, 229
NlaIII	CATG	6 cut(s)	308, 365, 386, 587, 614, 674
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	2 cut(s)	365, 674
PaeI	GCATGC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	193, 373
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	379
Psp124BI	GAGCTC	2 cut(s)	283, 312
Psp1406I	AACGTT	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	2 cut(s)	381, 465
RsaNI	GTAC	2 cut(s)	380, 464
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	2 cut(s)	283, 312
SaqAI	TTAA	3 cut(s)	63, 207, 216
SatI	GCNGC	2 cut(s)	192, 372
Sau3AI	GATC	3 cut(s)	40, 139, 229
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	3 cut(s)	283, 312, 406
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	85, 213
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	2 cut(s)	283, 312
StyI	CCWWGG	2 cut(s)	91, 413
TaaI	ACNGT	2 cut(s)	80, 101
TaiI	ACGT	3 cut(s)	381, 516, 604
TaqI	TCGA	2 cut(s)	37, 544
TasI	AATT	2 cut(s)	85, 213
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	63, 207, 216
Tru9I	TTAA	3 cut(s)	63, 207, 216
TseI	GCWGC	2 cut(s)	191, 371
TspDTI	ATGAA	2 cut(s)	549, 627
XagI	CCTNNNNNAGG	1 cut(s)	15
XceI	RCATGY	2 cut(s)	365, 674
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.