Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Forward (+)

71071330 .. 71072581

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG534400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTATCATCCTACTAGAGGTGGAGTTCGTGGTGGTCGAGATCAGTTTAGTTGGGACGATGTTAAGATTGACAAGCATCGTGAGAATTATCTTGGCCACAGTATCAAGGCCCCTGTTGGTAGATGGCAAAAAGGTAAGGATCTACACTGGTATAACAGAGACAAAAAAACATGGAGTGCCGAAATGGTTGCAGCAAAAGAAGAGATTCAAAGAATTAAGGAGGAAGAGGATCAGGCTATGAGGGAGGCTCTTGGACTAGCTCCTAAGCGTGCAAACCAAGCTCAAGGTAATCGACTTGATAAGCATGAGTTCTCAGAACTGGTGAAGCGAGGTTCTACTGCAGAGGACTTGGGTGAAAGGCATGCAGAAGCAGCACACATACATGGTCTTGGTTTTTCAAGAGCACCTGCCCCTTGGGATGATTCAACTTCTCTTCAACCTACAGTCAATGGAGGTGCACCTGAAATAGGGGATATTCCTGTGCCTAAGCTTCCACCAAAAGAAAAGGTTGAAGAGGTGTCCGAGGATGAAAGCAGTCGGAGGAAAAGGAGGCATGAAGAGAGGAAGCACAAGAAACATGAGAGGCGTGAGAAACGCGAGAAGCATGAAAAAGGGCATTCCTCAGACATGAGAAAACATAGGAACGACAAGGAGAAGAGGAGATGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

223

Amino Acids

25.9

Weight (kDa)

9.54

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMtag	PF10159	8 - 85	3e-34	Multiple myeloma tumor-associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccII	CGCG	1 cut(s)	597
AclWI	GGATC	2 cut(s)	147, 237
AcoI	YGGCCR	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	17, 467
AgsI	TTSAA	5 cut(s)	209, 399, 426, 437, 512
AluBI	AGCT	3 cut(s)	260, 281, 490
AluI	AGCT	3 cut(s)	260, 281, 490
Alw21I	GWGCWC	2 cut(s)	406, 460
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	147, 237
AoxI	GGCC	2 cut(s)	94, 108
ApaLI	GTGCAC	1 cut(s)	456
ApeKI	GCWGC	2 cut(s)	191, 371
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	334, 365
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	406, 460
BbvI	GCAGC	2 cut(s)	203, 383
BccI	CCATC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	15, 257
BfmI	CTRYAG	2 cut(s)	339, 441
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	2 cut(s)	192, 372
BlsI	GCNGC	2 cut(s)	193, 373
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	2 cut(s)	264, 486
BpuEI	CTTGAG	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	413, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 467
Bse1I	ACTGG	2 cut(s)	152, 324
BseDI	CCNNGG	2 cut(s)	413, 522
BseGI	GGATG	3 cut(s)	7, 424, 532
BseLI	CCNNNNNNNGG	2 cut(s)	17, 467
BseMII	CTCAG	2 cut(s)	327, 636
BseNI	ACTGG	2 cut(s)	152, 324
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	203, 383
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	96, 110
BsiHKAI	GWGCWC	2 cut(s)	406, 460
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	17, 467
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	96, 110
Bsp1286I	GDGCHC	2 cut(s)	406, 460
Bsp143I	GATC	3 cut(s)	40, 139, 229
BspANI	GGCC	2 cut(s)	96, 110
BspCNI	CTCAG	2 cut(s)	326, 635
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	147, 237
BsrI	ACTGG	2 cut(s)	152, 324
BssECI	CCNNGG	2 cut(s)	413, 522
BssMI	GATC	3 cut(s)	40, 139, 229
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	101, 445
Bst6I	CTCTTC	6 cut(s)	195, 219, 438, 507, 552, 650
BstC8I	GCNNGC	2 cut(s)	270, 363
BstDEI	CTNAG	5 cut(s)	264, 313, 486, 622, 669
BstENI	CCTNNNNNAGG	2 cut(s)	15, 465
BstF5I	GGATG	3 cut(s)	7, 424, 532
BstFNI	CGCG	1 cut(s)	597
BstKTI	GATC	3 cut(s)	43, 142, 232
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	3 cut(s)	40, 139, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 371
BstNSI	RCATGY	1 cut(s)	365
BstSFI	CTRYAG	2 cut(s)	339, 441
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	203, 383
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	96, 110
BtsCI	GGATG	3 cut(s)	7, 424, 532
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	270, 363
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	8 cut(s)	171, 305, 362, 383, 554, 578, 605, 628
CviJI	RGCY	7 cut(s)	96, 110, 236, 248, 260, 281, 490
CviKI_1	RGCY	7 cut(s)	96, 110, 236, 248, 260, 281, 490
DdeI	CTNAG	5 cut(s)	264, 313, 486, 622, 669
DpnI	GATC	3 cut(s)	42, 141, 231
DpnII	GATC	3 cut(s)	40, 139, 229
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	6 cut(s)	195, 219, 438, 507, 552, 650
EarI	CTCTTC	6 cut(s)	195, 219, 438, 507, 552, 650
Eco130I	CCWWGG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	2 cut(s)	15, 465
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	8 cut(s)	174, 308, 365, 386, 557, 581, 608, 631
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	8 cut(s)	170, 304, 361, 382, 553, 577, 604, 627
Fnu4HI	GCNGC	2 cut(s)	192, 372
FokI	GGATG	2 cut(s)	431, 539
Fsp4HI	GCNGC	2 cut(s)	192, 372
FspBI	CTAG	2 cut(s)	15, 257
GluI	GCNGC	2 cut(s)	192, 372
HaeIII	GGCC	2 cut(s)	96, 110
Hin1II	CATG	8 cut(s)	174, 308, 365, 386, 557, 581, 608, 631
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	205, 422
HphI	GGTGA	2 cut(s)	334, 365
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	4 cut(s)	316, 523, 540, 625
Hpy188III	TCNNGA	3 cut(s)	38, 80, 399
Hpy8I	GTNNAC	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	101, 445
HpyCH4V	TGCA	5 cut(s)	191, 272, 341, 365, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 371
HpyF3I	CTNAG	5 cut(s)	264, 313, 486, 622, 669
Hsp92II	CATG	8 cut(s)	174, 308, 365, 386, 557, 581, 608, 631
Kzo9I	GATC	3 cut(s)	40, 139, 229
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	126, 133, 218, 305, 420, 474, 492
Lsp1109I	GCAGC	2 cut(s)	203, 383
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	15, 257
MalI	GATC	3 cut(s)	42, 141, 231
MboI	GATC	3 cut(s)	40, 139, 229
MboII	GAAGA	6 cut(s)	212, 236, 425, 524, 569, 667
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	406, 460
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	85, 213
MluNI	TGGCCA	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	518
Mox20I	TGGCCA	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	2 cut(s)	63, 216
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	616
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	278, 371
NdeII	GATC	3 cut(s)	40, 139, 229
NlaIII	CATG	8 cut(s)	174, 308, 365, 386, 557, 581, 608, 631
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	205, 422
PkrI	GCNGC	2 cut(s)	193, 373
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	63, 216
SatI	GCNGC	2 cut(s)	192, 372
Sau3AI	GATC	3 cut(s)	40, 139, 229
Sau96I	GGNCC	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	406, 460
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	2 cut(s)	339, 441
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	85, 213
SspMI	CTAG	2 cut(s)	15, 257
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	2 cut(s)	101, 445
TaqI	TCGA	2 cut(s)	37, 292
TasI	AATT	2 cut(s)	85, 213
TfiI	GAWTC	2 cut(s)	205, 422
Tru1I	TTAA	2 cut(s)	63, 216
Tru9I	TTAA	2 cut(s)	63, 216
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	2 cut(s)	191, 371
TspDTI	ATGAA	3 cut(s)	543, 570, 621
TspRI	CASTG	1 cut(s)	152
VneI	GTGCAC	1 cut(s)	456
XagI	CCTNNNNNAGG	2 cut(s)	15, 465
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	2 cut(s)	15, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.