Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000381.1

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Reverse (-)

129910 .. 132578

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000381.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtatcatcctactagaggtggagttcgtggtggtcgagatcagtttagttgggacgatgttaaggtcgacaagcatcgtgagaattatcttggtcacagtatcaaggcccctgttggtagatggcaaaaaggtgggatcttgatccaatggagtgccgaaatggatgctgcaaaagatgagattaaaagaatcaaggaggaagaggatcaggctatgagggaggctcttggcttagctcctaagcgtgcaaaccaagctcaaggtaatcggcttgataagcatgagttctcagaacttgtgaagcgaggttctacggcagaggacttgggtgaagggcatgctgaagcagcacacgtacatggtcttggtttttcaagagcacctgccccttgggatggttcaacttctcttcaacctacagtcaaggggggtgcacctgaaatgggggatattcctgtgcctaagcttccaccaaaagaaaaagttgaagaggagtccgaggatgaaagcagtcgaaggaaaaggaggcgtgaggagaggaagcacgagaaacatgagaggcgtgagaaacgcgataagcatgaaaaacggcattcctcagatgagagaaaacataggaaagacaaggagaagaggagacatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

216

Amino Acids

24.87

Weight (kDa)

9.47

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	576
AclWI	GGATC	3 cut(s)	139, 146, 216
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	17, 398, 446
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	4 cut(s)	378, 405, 416, 491
AluBI	AGCT	3 cut(s)	239, 260, 469
AluI	AGCT	3 cut(s)	239, 260, 469
Alw21I	GWGCWC	2 cut(s)	385, 439
Alw26I	GTCTC	1 cut(s)	634
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	3 cut(s)	139, 146, 216
AoxI	GGCC	1 cut(s)	108
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	170, 350
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	385, 439
BbvI	GCAGC	2 cut(s)	157, 362
BccI	CCATC	2 cut(s)	117, 392
BceAI	ACGGC	2 cut(s)	333, 608
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	171, 351
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	2 cut(s)	172, 352
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	2 cut(s)	85, 157
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
Bpu10I	CCTNAGC	2 cut(s)	243, 465
Bpu1102I	GCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	392, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 398, 446
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	392, 501
BseGI	GGATG	4 cut(s)	7, 172, 403, 511
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	3 cut(s)	17, 398, 446
BseMII	CTCAG	2 cut(s)	306, 615
BseRI	GAGGAG	2 cut(s)	509, 551
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	157, 362
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	385, 439
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	17, 398, 446
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	385, 439
Bsp143I	GATC	4 cut(s)	40, 138, 144, 208
Bsp1720I	GCTNAGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	305, 614
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	3 cut(s)	139, 146, 216
BssECI	CCNNGG	2 cut(s)	392, 501
BssMI	GATC	4 cut(s)	40, 138, 144, 208
BssSI	CACGAG	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	101, 424
Bst6I	CTCTTC	4 cut(s)	198, 417, 486, 629
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	249, 342
BstDEI	CTNAG	6 cut(s)	235, 243, 292, 465, 601, 648
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	7, 172, 403, 511
BstFNI	CGCG	1 cut(s)	576
BstKTI	GATC	4 cut(s)	43, 141, 147, 211
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	4 cut(s)	40, 138, 144, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 280, 350
BstNSI	RCATGY	2 cut(s)	344, 647
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	157, 362
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	4 cut(s)	7, 172, 403, 511
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	249, 342
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	6 cut(s)	284, 341, 362, 557, 584, 644
CviJI	RGCY	8 cut(s)	110, 215, 227, 234, 239, 260, 274, 469
CviKI_1	RGCY	8 cut(s)	110, 215, 227, 234, 239, 260, 274, 469
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	6 cut(s)	235, 243, 292, 465, 601, 648
DpnI	GATC	4 cut(s)	42, 140, 146, 210
DpnII	GATC	4 cut(s)	40, 138, 144, 208
Eam1104I	CTCTTC	4 cut(s)	198, 417, 486, 629
EarI	CTCTTC	4 cut(s)	198, 417, 486, 629
Eco130I	CCWWGG	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	6 cut(s)	287, 344, 365, 560, 587, 647
FaiI	YATR	8 cut(s)	218, 285, 342, 363, 558, 585, 618, 645
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	6 cut(s)	283, 340, 361, 556, 583, 643
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	171, 351
FokI	GGATG	3 cut(s)	179, 410, 518
Fsp4HI	GCNGC	2 cut(s)	171, 351
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	171, 351
HaeIII	GGCC	1 cut(s)	110
Hin1II	CATG	6 cut(s)	287, 344, 365, 560, 587, 647
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	192, 497
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	70, 437
Hpy188I	TCNGA	3 cut(s)	295, 502, 604
Hpy188III	TCNNGA	4 cut(s)	38, 80, 142, 378
Hpy8I	GTNNAC	2 cut(s)	70, 437
HpyAV	CCTTC	2 cut(s)	329, 513
HpyCH4III	ACNGT	2 cut(s)	101, 424
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	3 cut(s)	173, 251, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 280, 350
HpyF3I	CTNAG	6 cut(s)	235, 243, 292, 465, 601, 648
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	287, 344, 365, 560, 587, 647
Kzo9I	GATC	4 cut(s)	40, 138, 144, 208
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	126, 197, 399, 453, 471
Lsp1109I	GCAGC	2 cut(s)	157, 362
LweI	GCATC	2 cut(s)	85, 157
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	42, 140, 146, 210
MboI	GATC	4 cut(s)	40, 138, 144, 208
MboII	GAAGA	4 cut(s)	215, 404, 503, 646
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	385, 439
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	506
MseI	TTAA	2 cut(s)	63, 186
MslI	CAYNNNNRTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	595
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	257, 280, 350
NdeII	GATC	4 cut(s)	40, 138, 144, 208
NlaIII	CATG	6 cut(s)	287, 344, 365, 560, 587, 647
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	2 cut(s)	344, 647
PaeI	GCATGC	1 cut(s)	344
PaqCI	CACCTGC	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	172, 352
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	63, 186
SatI	GCNGC	2 cut(s)	171, 351
Sau3AI	GATC	4 cut(s)	40, 138, 144, 208
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	385, 439
SfaNI	GCATC	2 cut(s)	85, 157
SfcI	CTRYAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	101, 424
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	37, 69, 517
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	63, 186
Tru9I	TTAA	2 cut(s)	63, 186
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	170, 350
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	522, 600
VneI	GTGCAC	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	15
XceI	RCATGY	2 cut(s)	344, 647
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.