Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010421

Physical Location & Seq

Genomic Coordinates Reverse (-)

19573916 .. 19577141

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAAACTTTTTGGTCTCTTTCTTAGTTTTACTCTCTTGTTTCTTTGTCCGTTCATATCTCAAGCCGATGTGCCGGAACTTAGCCGCCAGCCGCCTCGTCCCATCGTATTCGTCCATAATGACCGCTCCAAATCCGATCCGCAACAGGTGCACATATCGTTAGCGGGTAAGGACCACATGAGAGTAACATTCATAACGGAAGACAACAAGGTGGAGTCGGTAGTGGAATACGGTAAACAACCAGGAAAGTACGACGGAAAAGCCACCGGAGAATGCACTTCTTACAAATACTTCTTCTACAAATCCGGCAAAATCCACCATGTCAAGATCGGACCTCTCCAAGCCAACACCACTTACTACTACCGTTGTGGCGGCAACGGCCCTGAATTTTCTTTCAAGACCCCTCCATCAACTTTTCCTGTCGAGTTCGCAATCGTAGGCGACCTAGGCCAAACCGAATGGACAGCAGCAACGTTATCTCATATAAATAGCCAAGACTACGACGTGTTTCTACTTCCTGGAGACCTATCCTACGCCGACACTCACCAGCCACTCTGGGACTCCTTTGGTCGCCTAGTGGAGCCACTAGCGAGCAAGCGTCCTTGGATGGTTACTGAAGGAAACCACGAAATCGAATTCTTCCCAATCATTGAACACACAACCTTCAAGTCATACAATGCTCGGTGGCTCATGCCTCACACCGAGAGCTTCTCTACCTCCAACCTGTACTACTCTTTTGACGTAGCCGGTGTCCACACTGTTATGCTTGGTTCTTACACCGACTTTGACTGTGAATCCGATCAGTATCAATGGCTCCAGGCCGATCTAGCAAAGGTTGACCGTAAAACGACGCCGTGGGTGGTGGTGTTGCTGCACGCCCCGTGGTACAACACAAACGAGGCACATGAAGGTGAAGGAGAGAGCATGAGGGAAGCTATGGAGTCTCTGCTCTTTAATGCTCGAGTCGACGTCGTCTTTTCTGGCCATGTTCATGCCTACGAACGTTTCAAACGTGTATATAACAACAAGGCCGACCCCTGTGGGCCTATACACATTACCATCGGTGACGGCGGTAACCGAGAGGGCCTTGCTTTATCATTCAAGAAGCCTCCTTCACCTTTATCGGAATTTCGCGAATCGAGTTTTGGACATGGGAGATTGAAGGTTATGGACGGGAAACGAGCACATTGGTCATGGCATAGAAACAATGACTCGAACTCACTTCTTGCTGATGAGGTCTGGCTTGATAGTCTTAGCACATCATCATCATGTTGGCCTTCAAGTCGCTCCAATGATGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

434

Amino Acids

49.36

Weight (kDa)

5.87

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	47 - 134	1.9e-22	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	143 - 333	1.3e-20	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	348 - 405	1.5e-17	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52820
fragaria_vesca	FvH4_6g18411 FvH4_6g18420
malus_domestica	MD12G1023300.v1.1 MD14G1020300.v1.1
prunus_persica	Prupe.7G113300_v2.0.a1
pyrus_communis	pycom12g02170 pycom14g01990
rosa_chinensis	RchiOBHm_Chr3g0472921 RchiOBHm_Chr3g0472941
rosa_laevigata	RLG00000024045 RLG00000024046
rosa_multiflora	Rmu_sc0004313.1_g000002 Rmu_sc0021557.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408480 Rroxscaffold_6G00408490
rosa_rugosa	Rorug03G0129600
rosa_samantha	Rh3CG205000 Rh3CG205200
rosa_wichuraiana	Rw3G016170 Rw3G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	972
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	966
AccII	CGCG	1 cut(s)	1134
AciI	CCGC	7 cut(s)	85, 92, 124, 140, 164, 372, 1071
AclI	AACGTT	2 cut(s)	473, 1003
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	982
AcsI	RAATTY	3 cut(s)	386, 635, 1127
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	2 cut(s)	851, 969
AfaI	GTAC	3 cut(s)	251, 728, 887
AflIII	ACRYGT	2 cut(s)	504, 1012
AgsI	TTSAA	7 cut(s)	397, 653, 667, 1009, 1102, 1162, 1281
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	3 cut(s)	241, 517, 816
AjuI	GAANNNNNNNTTGG	2 cut(s)	1128, 1160
AluBI	AGCT	3 cut(s)	708, 935, 1300
AluI	AGCT	3 cut(s)	708, 935, 1300
Alw21I	GWGCWC	3 cut(s)	153, 1186, 1302
Alw26I	GTCTC	3 cut(s)	20, 516, 948
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	960
AoxI	GGCC	8 cut(s)	379, 448, 819, 982, 1029, 1043, 1084, 1274
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	467, 871
ApoI	RAATTY	3 cut(s)	386, 635, 1127
AspA2I	CCTAGG	1 cut(s)	445
AspS9I	GGNCC	5 cut(s)	172, 332, 380, 1043, 1084
AsuHPI	GGTGA	4 cut(s)	536, 923, 1076, 1107
AvaI	CYCGRG	1 cut(s)	960
AvaII	GGWCC	2 cut(s)	172, 332
AvrII	CCTAGG	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	984
BanII	GRGCYC	1 cut(s)	1302
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	3 cut(s)	153, 1186, 1302
BbvI	GCAGC	2 cut(s)	479, 858
BccI	CCATC	4 cut(s)	110, 415, 601, 1067
BceAI	ACGGC	3 cut(s)	394, 838, 1084
BciT130I	CCWGG	3 cut(s)	243, 519, 818
BcoDI	GTCTC	3 cut(s)	20, 516, 948
BfaI	CTAG	5 cut(s)	446, 575, 587, 827, 1303
BisI	GCNGC	5 cut(s)	85, 92, 373, 468, 872
BlnI	CCTAGG	1 cut(s)	445
BlsI	GCNGC	5 cut(s)	86, 93, 374, 469, 873
Bme1390I	CCNGG	3 cut(s)	243, 519, 818
Bme18I	GGWCC	2 cut(s)	172, 332
BmeT110I	CYCGRG	1 cut(s)	960
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	5 cut(s)	172, 332, 380, 1043, 1084
BmiI	GGNNCC	2 cut(s)	582, 815
BmrFI	CCNGG	3 cut(s)	243, 519, 818
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
BpmI	CTGGAG	2 cut(s)	540, 800
BpuEI	CTTGAG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	2 cut(s)	851, 969
BsaI	GGTCTC	2 cut(s)	20, 516
BsaJI	CCNNGG	4 cut(s)	445, 602, 854, 881
BsaWI	WCCGGW	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	243, 519, 818
BseDI	CCNNGG	4 cut(s)	445, 602, 854, 881
BseGI	GGATG	1 cut(s)	612
BseJI	GATNNNNATC	1 cut(s)	804
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	479, 858
BsgI	GTGCAG	1 cut(s)	857
Bsh1236I	CGCG	1 cut(s)	1134
BshFI	GGCC	8 cut(s)	381, 450, 821, 984, 1031, 1045, 1086, 1276
BsiHKAI	GWGCWC	3 cut(s)	153, 1186, 1302
BsiHKCI	CYCGRG	1 cut(s)	960
BsiSI	CCGG	4 cut(s)	74, 267, 306, 747
BslFI	GGGAC	2 cut(s)	84, 572
BsmAI	GTCTC	3 cut(s)	20, 516, 948
BsmFI	GGGAC	2 cut(s)	84, 572
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	8 cut(s)	381, 450, 821, 984, 1031, 1045, 1086, 1276
Bso31I	GGTCTC	2 cut(s)	20, 516
BsoBI	CYCGRG	1 cut(s)	960
Bsp1286I	GDGCHC	3 cut(s)	153, 1186, 1302
Bsp143I	GATC	4 cut(s)	136, 327, 799, 823
Bsp68I	TCGCGA	1 cut(s)	1134
BspACI	CCGC	7 cut(s)	85, 92, 124, 140, 164, 372, 1071
BspANI	GGCC	8 cut(s)	381, 450, 821, 984, 1031, 1045, 1086, 1276
BspFNI	CGCG	1 cut(s)	1134
BspLI	GGNNCC	2 cut(s)	582, 815
BspPI	GGATC	1 cut(s)	131
BspTNI	GGTCTC	2 cut(s)	20, 516
BsrBI	CCGCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	4 cut(s)	445, 602, 854, 881
BssMI	GATC	4 cut(s)	136, 327, 799, 823
BssNI	GRCGYC	2 cut(s)	851, 969
BssT1I	CCWWGG	2 cut(s)	445, 602
Bst2UI	CCWGG	3 cut(s)	243, 519, 818
Bst4CI	ACNGT	5 cut(s)	233, 365, 760, 791, 842
BstACI	GRCGYC	2 cut(s)	851, 969
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	4 cut(s)	89, 592, 596, 876
BstDEI	CTNAG	3 cut(s)	23, 80, 1253
BstDSI	CCRYGG	2 cut(s)	854, 881
BstEII	GGTNACC	1 cut(s)	1073
BstF5I	GGATG	1 cut(s)	612
BstFNI	CGCG	1 cut(s)	1134
BstKTI	GATC	4 cut(s)	139, 330, 802, 826
BstMAI	GTCTC	3 cut(s)	20, 516, 948
BstMBI	GATC	4 cut(s)	136, 327, 799, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 378, 447, 827
BstNI	CCWGG	3 cut(s)	243, 519, 818
BstPI	GGTNACC	1 cut(s)	1073
BstSCI	CCNGG	3 cut(s)	241, 517, 816
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	1134
BstV1I	GCAGC	2 cut(s)	479, 858
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	8 cut(s)	381, 450, 821, 984, 1031, 1045, 1086, 1276
BtgI	CCRYGG	2 cut(s)	854, 881
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	756
BtuMI	TCGCGA	1 cut(s)	1134
Cac8I	GCNNGC	4 cut(s)	89, 592, 596, 876
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	5 cut(s)	172, 332, 380, 1043, 1084
CseI	GACGC	2 cut(s)	587, 859
Csp6I	GTAC	3 cut(s)	250, 727, 886
CviQI	GTAC	3 cut(s)	250, 727, 886
DdeI	CTNAG	3 cut(s)	23, 80, 1253
DpnI	GATC	4 cut(s)	138, 329, 801, 825
DpnII	GATC	4 cut(s)	136, 327, 799, 823
EaeI	YGGCCR	1 cut(s)	982
Ecl136II	GAGCTC	1 cut(s)	1300
Eco130I	CCWWGG	2 cut(s)	445, 602
Eco24I	GRGCYC	1 cut(s)	1302
Eco31I	GGTCTC	2 cut(s)	20, 516
Eco47I	GGWCC	2 cut(s)	172, 332
Eco53kI	GAGCTC	1 cut(s)	1300
Eco57I	CTGAAG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	960
Eco91I	GGTNACC	1 cut(s)	1073
EcoICRI	GAGCTC	1 cut(s)	1300
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoO65I	GGTNACC	1 cut(s)	1073
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	241, 517, 816
EcoT14I	CCWWGG	2 cut(s)	445, 602
EcoT38I	GRGCYC	1 cut(s)	1302
ErhI	CCWWGG	2 cut(s)	445, 602
FaqI	GGGAC	2 cut(s)	84, 572
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	5 cut(s)	85, 92, 373, 468, 872
FokI	GGATG	1 cut(s)	619
FriOI	GRGCYC	1 cut(s)	1302
Fsp4HI	GCNGC	5 cut(s)	85, 92, 373, 468, 872
FspBI	CTAG	5 cut(s)	446, 575, 587, 827, 1303
GluI	GCNGC	5 cut(s)	85, 92, 373, 468, 872
GsuI	CTGGAG	2 cut(s)	540, 800
HaeIII	GGCC	8 cut(s)	381, 450, 821, 984, 1031, 1045, 1086, 1276
HapII	CCGG	4 cut(s)	74, 267, 306, 747
HgaI	GACGC	2 cut(s)	587, 859
Hin1I	GRCGYC	2 cut(s)	851, 969
HincII	GTYRAC	2 cut(s)	838, 967
HindII	GTYRAC	2 cut(s)	838, 967
HinfI	GANTC	7 cut(s)	215, 560, 794, 941, 963, 1136, 1211
HpaII	CCGG	4 cut(s)	74, 267, 306, 747
HphI	GGTGA	4 cut(s)	536, 923, 1076, 1107
Hpy166II	GTNNAC	5 cut(s)	151, 236, 754, 838, 967
Hpy188I	TCNGA	4 cut(s)	136, 332, 799, 1126
Hpy188III	TCNNGA	4 cut(s)	325, 397, 1102, 1133
Hpy8I	GTNNAC	5 cut(s)	151, 236, 754, 838, 967
Hpy99I	CGWCG	5 cut(s)	257, 506, 853, 971, 974
HpyAV	CCTTC	7 cut(s)	611, 673, 902, 908, 1122, 1156, 1287
HpyCH4III	ACNGT	5 cut(s)	233, 365, 760, 791, 842
HpyCH4IV	ACGT	6 cut(s)	473, 504, 741, 969, 1003, 1012
HpyCH4V	TGCA	3 cut(s)	151, 276, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 378, 447, 827
HpyF3I	CTNAG	3 cut(s)	23, 80, 1253
HpySE526I	ACGT	6 cut(s)	473, 504, 741, 969, 1003, 1012
Hsp92I	GRCGYC	2 cut(s)	851, 969
Kzo9I	GATC	4 cut(s)	136, 327, 799, 823
LmnI	GCTCC	4 cut(s)	131, 580, 819, 1292
Lsp1109I	GCAGC	2 cut(s)	479, 858
MaeI	CTAG	5 cut(s)	446, 575, 587, 827, 1303
MaeII	ACGT	6 cut(s)	473, 504, 741, 969, 1003, 1012
MaeIII	GTNAC	4 cut(s)	184, 610, 1064, 1073
MalI	GATC	4 cut(s)	138, 329, 801, 825
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	4 cut(s)	136, 327, 799, 823
MboII	GAAGA	3 cut(s)	212, 286, 631
MhlI	GDGCHC	3 cut(s)	153, 1186, 1302
MlsI	TGGCCA	1 cut(s)	984
MluCI	AATT	3 cut(s)	386, 635, 1127
MluNI	TGGCCA	1 cut(s)	984
MlyI	GAGTC	5 cut(s)	224, 554, 950, 972, 1205
MmeI	TCCRAC	1 cut(s)	744
Mox20I	TGGCCA	1 cut(s)	984
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	1 cut(s)	954
MslI	CAYNNNNRTG	4 cut(s)	761, 909, 990, 1267
Msp20I	TGGCCA	1 cut(s)	984
MspI	CCGG	4 cut(s)	74, 267, 306, 747
MspR9I	CCNGG	3 cut(s)	243, 519, 818
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	3 cut(s)	243, 519, 818
MvnI	CGCG	1 cut(s)	1134
MwoI	GCNNNNNNNGC	4 cut(s)	148, 378, 447, 827
NdeII	GATC	4 cut(s)	136, 327, 799, 823
NlaIV	GGNNCC	2 cut(s)	582, 815
NmuCI	GTSAC	1 cut(s)	1064
NruI	TCGCGA	1 cut(s)	1134
PaeR7I	CTCGAG	1 cut(s)	960
PcsI	WCGNNNNNNNCGW	1 cut(s)	1009
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	794, 1136
PflFI	GACNNNGTC	1 cut(s)	971
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	5 cut(s)	86, 93, 374, 469, 873
PleI	GAGTC	5 cut(s)	223, 554, 949, 971, 1205
PpsI	GAGTC	5 cut(s)	223, 554, 949, 971, 1205
Psp124BI	GAGCTC	1 cut(s)	1302
Psp1406I	AACGTT	2 cut(s)	473, 1003
Psp6I	CCWGG	3 cut(s)	241, 517, 816
PspEI	GGTNACC	1 cut(s)	1073
PspGI	CCWGG	3 cut(s)	241, 517, 816
PspN4I	GGNNCC	2 cut(s)	582, 815
PspPI	GGNCC	5 cut(s)	172, 332, 380, 1043, 1084
PspXI	VCTCGAGB	1 cut(s)	960
PsyI	GACNNNGTC	1 cut(s)	971
RruI	TCGCGA	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	251, 728, 887
RsaNI	GTAC	3 cut(s)	250, 727, 886
RseI	CAYNNNNRTG	4 cut(s)	761, 909, 990, 1267
SacI	GAGCTC	1 cut(s)	1302
SalI	GTCGAC	1 cut(s)	965
SaqAI	TTAA	1 cut(s)	954
SatI	GCNGC	5 cut(s)	85, 92, 373, 468, 872
Sau3AI	GATC	4 cut(s)	136, 327, 799, 823
Sau96I	GGNCC	5 cut(s)	172, 332, 380, 1043, 1084
SchI	GAGTC	5 cut(s)	224, 554, 950, 972, 1205
ScrFI	CCNGG	3 cut(s)	243, 519, 818
SduI	GDGCHC	3 cut(s)	153, 1186, 1302
Sfr274I	CTCGAG	1 cut(s)	960
SinI	GGWCC	2 cut(s)	172, 332
SlaI	CTCGAG	1 cut(s)	960
SmiMI	CAYNNNNRTG	4 cut(s)	761, 909, 990, 1267
SmlI	CTYRAG	2 cut(s)	60, 960
SmoI	CTYRAG	2 cut(s)	60, 960
Sse9I	AATT	3 cut(s)	386, 635, 1127
SsiI	CCGC	7 cut(s)	85, 92, 124, 140, 164, 372, 1071
SspMI	CTAG	5 cut(s)	446, 575, 587, 827, 1303
SstI	GAGCTC	1 cut(s)	1302
StyD4I	CCNGG	3 cut(s)	241, 517, 816
StyI	CCWWGG	2 cut(s)	445, 602
TaaI	ACNGT	5 cut(s)	233, 365, 760, 791, 842
TaiI	ACGT	6 cut(s)	476, 507, 744, 972, 1006, 1015
TaqI	TCGA	6 cut(s)	423, 633, 961, 966, 1139, 1214
TasI	AATT	3 cut(s)	386, 635, 1127
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	3 cut(s)	87, 94, 375
TfiI	GAWTC	2 cut(s)	794, 1136
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	2 cut(s)	467, 871
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	5 cut(s)	17, 43, 181, 921, 980
TspGWI	ACGGA	3 cut(s)	39, 212, 270
TspRI	CASTG	1 cut(s)	763
Tth111I	GACNNNGTC	1 cut(s)	971
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	172, 332
XapI	RAATTY	3 cut(s)	386, 635, 1127
XhoI	CTCGAG	1 cut(s)	960
XmaJI	CCTAGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	5 cut(s)	446, 575, 587, 827, 1303
ZraI	GACGTC	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.