Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010421

Physical Location & Seq

Genomic Coordinates Reverse (-)

10506982 .. 10509545

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGGAAGAAAGCCAGCCGGGTCGTCGTCTTCTTCCTCCACTTCTGAGCTGCTTGGGTCCAAAGACTCATCGTCCTCTTCATCTGGGATTTTCGGGGCCATTTTCGCGCCTCCCTTGAACTCCCCAAAGGTGCTAAGCAGGGAATCTCTGCGTTCTGAACTCACTAGGAAAAAGATCACTGATCAGCCGTTGAACTTCCACTCGGCAGAGCCAGGTACTTACTATAGTGGCAAAGAAGGTGAGGGTCAGAGCACACGGAAAGAGGACATGAGTTCCTACTATGAGGATCAGAGAGTGCAATCACCATGTCATCTCAGTTCATCAATCTATTATGGTGGGCAAGACATCTATAATTATCCCCAGAATAGCCAGAGCACTGGAATTAACTCTACGTTCAAGAAAGATGGGACTGACGACGATGGCACTGCTTGCAGAGGAAACTGGTGGCAAGGGTCTCTCTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

156

Amino Acids

17.06

Weight (kDa)

5.68

Isoelectric Point (pI)

64.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52820
fragaria_vesca	FvH4_6g18411 FvH4_6g18420
malus_domestica	MD12G1023300.v1.1 MD14G1020300.v1.1
prunus_persica	Prupe.7G113300_v2.0.a1
pyrus_communis	pycom12g02170 pycom14g01990
rosa_chinensis	RchiOBHm_Chr3g0472921 RchiOBHm_Chr3g0472941
rosa_laevigata	RLG00000024045 RLG00000024046
rosa_multiflora	Rmu_sc0004313.1_g000002 Rmu_sc0021557.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408480 Rroxscaffold_6G00408490
rosa_rugosa	Rorug03G0129600
rosa_samantha	Rh3CG205000 Rh3CG205200
rosa_wichuraiana	Rw3G016170 Rw3G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AclWI	GGATC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	121, 196, 400
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	2 cut(s)	257, 380
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	60, 99
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	254, 297
AvaII	GGWCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	257, 380
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	401, 416
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	22, 216
Bme18I	GGWCC	1 cut(s)	60
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	60, 99
BmiI	GGNNCC	2 cut(s)	61, 100
BmrFI	CCNGG	2 cut(s)	22, 216
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	385, 449
BseBI	CCWGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	39, 331
BseNI	ACTGG	2 cut(s)	385, 449
BseXI	GCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	257, 380
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	257, 380
Bsp143I	GATC	3 cut(s)	177, 184, 289
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	40, 330
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	61, 100
BspPI	GGATC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	385, 449
BssMI	GATC	3 cut(s)	177, 184, 289
Bst2UI	CCWGG	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	18, 433
BstDEI	CTNAG	3 cut(s)	48, 137, 317
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	180, 187, 292
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	177, 184, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 432
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	20, 214
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	101
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	180, 378, 426
Cac8I	GCNNGC	2 cut(s)	18, 433
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	60, 99
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	271, 309
CviJI	RGCY	7 cut(s)	16, 20, 52, 101, 190, 214, 372
CviKI_1	RGCY	7 cut(s)	16, 20, 52, 101, 190, 214, 372
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	3 cut(s)	48, 137, 317
DpnI	GATC	3 cut(s)	179, 186, 291
DpnII	GATC	3 cut(s)	177, 184, 289
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	274, 312
FaiI	YATR	6 cut(s)	228, 272, 285, 310, 336, 354
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	270, 308
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	274, 312
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	68, 146
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	254, 297
Hpy188I	TCNGA	4 cut(s)	49, 160, 252, 294
Hpy188III	TCNNGA	1 cut(s)	400
Hpy99I	CGWCG	2 cut(s)	31, 422
HpyAV	CCTTC	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	301, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 432
HpyF3I	CTNAG	3 cut(s)	48, 137, 317
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	274, 312
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	177, 184, 289
Lsp1109I	GCAGC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	395
MalI	GATC	3 cut(s)	179, 186, 291
MboI	GATC	3 cut(s)	177, 184, 289
MboII	GAAGA	4 cut(s)	21, 24, 27, 72
MhlI	GDGCHC	2 cut(s)	257, 380
MluCI	AATT	2 cut(s)	355, 384
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	49, 88, 123, 238, 259, 280, 431
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	22, 216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	107, 432
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	177, 184, 289
NlaIII	CATG	2 cut(s)	274, 312
NlaIV	GGNNCC	2 cut(s)	61, 100
NmeAIII	GCCGAG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	61, 100
PspPI	GGNCC	2 cut(s)	60, 99
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	3 cut(s)	177, 184, 289
Sau96I	GGNCC	2 cut(s)	60, 99
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	22, 216
SduI	GDGCHC	2 cut(s)	257, 380
SetI	ASST	5 cut(s)	54, 135, 220, 244, 398
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	2 cut(s)	355, 384
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	20, 214
TaiI	ACGT	1 cut(s)	398
TasI	AATT	2 cut(s)	355, 384
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	187, 385, 433
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	72, 312
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	3 cut(s)	187, 385, 433
VpaK11BI	GGWCC	1 cut(s)	60
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.