Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021557.1

Orthogroup ID

OG0010421

Physical Location & Seq

Genomic Coordinates Reverse (-)

8740 .. 11972

Gene Structure 3233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021557.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgacgatgaaattgagcctgcatctgttctctttcctcctgactatctctgttgtccctcacctcctaaaatcacaagatgacgattttgttaggcaacctgctggtagagtaattctcactcctcatgatcgttctgactctgaccctcaacaggtgcatatttcactggtgggaaaggaccacgtgaaagtttcatgggttacagacaacagtcataccaaatctattgtggagtatggaaagcaatctggaaaatataatgcaaagtctactggagaacacacatggtacgattatttttcatatacttctgggaggatccaccatgttactattggccctttggagccttcaaccacatacttctatagctgtggtggttccggtccggagttctccttcaagacacccccacaaacacttccgatcgaatttgtaatagttggtgacctaggacaaactgattggactaactctactctagcccacatcaaaagcatagactacgatgtcctcctcttaccgggtgatctatcctatgccaatggacaccaacccctttgggactcgtttggccggattgttgaacccttggcgagccaccgcccctggatggtcacagaaggcaaccacgaagtcgaaatctctcccgtcgtttccccaaccgggttcaaagccttcaatgccaggtggcaaatgccgtacaatgagagcggatccacctcgaacttgtactactcttttgaagttgctggcacccacatcatcatgcttgggtcctacgctgagtttgacaccaaatcgaagcagtacgcgtggcttgtagccgatttggcaaagattgataggaagaaaacgccgtgggttgttgtggtattgcatgcaccgtggtataataccaacactgctcatcagggtgaaggagagagcatgagaatagctatggagaagttgctgtataaggcacgggttgatctggtttattcagggcacgttcatgcctatgagcgatttactagggtgtacaataataaggctgacccatgtggtcccgtgcatgtgaccattggcgacggtgggaaccgagaaggattggcattaatgttcgaagaccccccttctcctctgtccttgtacagagaaccgagttttggacatggacgactcaagatagtgaatgaaacacacgccgtttggggatggcatcgcaaccaggactcaaactttgttgtaaaagacctagtctggctacaaagtttgagctcctctaaaatatgctccaaatctgcggacctggaagttccaccgtcatctaaggatgaattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

443

Amino Acids

49.83

Weight (kDa)

6.25

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52820
fragaria_vesca	FvH4_6g18411 FvH4_6g18420
malus_domestica	MD12G1023300.v1.1 MD14G1020300.v1.1
prunus_persica	Prupe.7G113300_v2.0.a1
pyrus_communis	pycom12g02170 pycom14g01990
rosa_chinensis	RchiOBHm_Chr3g0472921 RchiOBHm_Chr3g0472941
rosa_laevigata	RLG00000024045 RLG00000024046
rosa_multiflora	Rmu_sc0004313.1_g000002 Rmu_sc0021557.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408480 Rroxscaffold_6G00408490
rosa_rugosa	Rorug03G0129600
rosa_samantha	Rh3CG205000 Rh3CG205200
rosa_wichuraiana	Rw3G016170 Rw3G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1330
AasI	GACNNNNNNGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	758
AccBSI	CCGCTC	1 cut(s)	717
AccI	GTMKAC	1 cut(s)	272
AccII	CGCG	1 cut(s)	818
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	3 cut(s)	607, 717, 1292
AclWI	GGATC	4 cut(s)	316, 329, 714, 727
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	434
AcvI	CACGTG	1 cut(s)	187
AfaI	GTAC	6 cut(s)	293, 707, 737, 815, 1028, 1139
AfiI	CCNNNNNNNGG	5 cut(s)	154, 526, 616, 669, 1154
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	6 cut(s)	357, 406, 590, 676, 685, 749
AjnI	CCWGG	4 cut(s)	611, 689, 1215, 1296
AjuI	GAANNNNNNNTTGG	2 cut(s)	1137, 1169
AluBI	AGCT	3 cut(s)	375, 944, 1266
AluI	AGCT	3 cut(s)	375, 944, 1266
Alw21I	GWGCWC	1 cut(s)	1268
AlwI	GGATC	4 cut(s)	316, 329, 714, 727
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	2 cut(s)	340, 577
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	1211, 1243
AseI	ATTAAT	1 cut(s)	1103
AspA2I	CCTAGG	1 cut(s)	454
AspS9I	GGNCC	6 cut(s)	181, 341, 389, 780, 1052, 1294
AsuC2I	CCSGG	2 cut(s)	528, 670
AsuHPI	GGTGA	4 cut(s)	53, 461, 542, 932
AsuII	TTCGAA	1 cut(s)	1110
AvaII	GGWCC	5 cut(s)	181, 389, 780, 1052, 1294
AvrII	CCTAGG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	996
BamHI	GGATCC	2 cut(s)	321, 719
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	1268
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	1119
Bbv12I	GWGCWC	1 cut(s)	1268
BccI	CCATC	2 cut(s)	610, 1197
BceAI	ACGGC	3 cut(s)	688, 847, 1178
BciT130I	CCWGG	4 cut(s)	613, 691, 1217, 1298
BcnI	CCSGG	2 cut(s)	528, 670
BfaI	CTAG	4 cut(s)	455, 485, 1020, 1244
BfmI	CTRYAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	109
BglI	GCCNNNNNGGC	1 cut(s)	836
BlnI	CCTAGG	1 cut(s)	454
Bme1390I	CCNGG	6 cut(s)	528, 613, 670, 691, 1217, 1298
Bme18I	GGWCC	5 cut(s)	181, 389, 780, 1052, 1294
BmgT120I	GGNCC	6 cut(s)	181, 341, 389, 780, 1052, 1294
BmiI	GGNNCC	8 cut(s)	323, 351, 385, 721, 760, 781, 1054, 1085
BmrFI	CCNGG	6 cut(s)	528, 613, 670, 691, 1217, 1298
BmsI	GCATC	2 cut(s)	31, 1216
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	1119
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	1154
BpuMI	CCSGG	2 cut(s)	528, 670
BsaAI	YACGTR	1 cut(s)	187
BsaJI	CCNNGG	5 cut(s)	454, 594, 611, 863, 890
BsaWI	WCCGGW	2 cut(s)	386, 391
Bsc4I	CCNNNNNNNGG	5 cut(s)	154, 526, 616, 669, 1154
Bse1I	ACTGG	2 cut(s)	174, 280
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	4 cut(s)	613, 691, 1217, 1298
BseDI	CCNNGG	5 cut(s)	454, 594, 611, 863, 890
BseGI	GGATG	3 cut(s)	621, 1208, 1327
BseLI	CCNNNNNNNGG	5 cut(s)	154, 526, 616, 669, 1154
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	2 cut(s)	174, 280
BseRI	GAGGAG	4 cut(s)	114, 509, 1116, 1258
BseSI	GKGCMC	1 cut(s)	996
Bsh1236I	CGCG	1 cut(s)	818
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	342, 579
BshNI	GGYRCC	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	1268
BsiSI	CCGG	5 cut(s)	387, 392, 527, 580, 669
BslFI	GGGAC	3 cut(s)	41, 581, 1038
BslI	CCNNNNNNNGG	5 cut(s)	154, 526, 616, 669, 1154
BsmFI	GGGAC	3 cut(s)	41, 581, 1038
BsnI	GGCC	2 cut(s)	342, 579
Bsp119I	TTCGAA	1 cut(s)	1110
Bsp1286I	GDGCHC	2 cut(s)	996, 1268
Bsp13I	TCCGGA	1 cut(s)	391
Bsp1407I	TGTACA	2 cut(s)	1026, 1137
Bsp143I	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
BspACI	CCGC	3 cut(s)	607, 717, 1292
BspANI	GGCC	2 cut(s)	342, 579
BspCNI	CTCAG	1 cut(s)	781
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	818
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	8 cut(s)	323, 351, 385, 721, 760, 781, 1054, 1085
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	4 cut(s)	316, 329, 714, 727
BspT104I	TTCGAA	1 cut(s)	1110
BspT107I	GGYRCC	1 cut(s)	758
BsrBI	CCGCTC	1 cut(s)	717
BsrGI	TGTACA	2 cut(s)	1026, 1137
BsrI	ACTGG	2 cut(s)	174, 280
BssECI	CCNNGG	5 cut(s)	454, 594, 611, 863, 890
BssMI	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
BssT1I	CCWWGG	2 cut(s)	454, 594
Bst2UI	CCWGG	4 cut(s)	613, 691, 1217, 1298
Bst4CI	ACNGT	4 cut(s)	215, 891, 1079, 1311
BstAUI	TGTACA	2 cut(s)	1026, 1137
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	1110
BstC8I	GCNNGC	4 cut(s)	20, 601, 757, 885
BstDEI	CTNAG	2 cut(s)	789, 1317
BstDSI	CCRYGG	2 cut(s)	863, 890
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	621, 1208, 1327
BstFNI	CGCG	1 cut(s)	818
BstKTI	GATC	6 cut(s)	133, 324, 432, 535, 722, 979
BstMBI	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 836
BstNI	CCWGG	4 cut(s)	613, 691, 1217, 1298
BstNSI	RCATGY	2 cut(s)	887, 1064
BstPAI	GACNNNNGTC	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	6 cut(s)	526, 611, 668, 689, 1215, 1296
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	996
BstUI	CGCG	1 cut(s)	818
BstV2I	GAAGAC	1 cut(s)	1119
BstX2I	RGATCY	2 cut(s)	321, 719
BstYI	RGATCY	2 cut(s)	321, 719
BsuRI	GGCC	2 cut(s)	342, 579
BtgI	CCRYGG	2 cut(s)	863, 890
BtgZI	GCGATG	1 cut(s)	1193
BtsCI	GGATG	3 cut(s)	621, 1208, 1327
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	167, 906
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	4 cut(s)	20, 601, 757, 885
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	6 cut(s)	181, 341, 389, 780, 1052, 1294
CpoI	CGGWCCG	1 cut(s)	389
Csp6I	GTAC	6 cut(s)	292, 706, 736, 814, 1027, 1138
CspI	CGGWCCG	1 cut(s)	389
CviQI	GTAC	6 cut(s)	292, 706, 736, 814, 1027, 1138
DdeI	CTNAG	2 cut(s)	789, 1317
DpnI	GATC	6 cut(s)	132, 323, 431, 534, 721, 978
DpnII	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	577
Ecl136II	GAGCTC	1 cut(s)	1266
Eco130I	CCWWGG	2 cut(s)	454, 594
Eco24I	GRGCYC	1 cut(s)	1268
Eco47I	GGWCC	5 cut(s)	181, 389, 780, 1052, 1294
Eco53kI	GAGCTC	1 cut(s)	1266
Eco72I	CACGTG	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	1266
EcoO109I	RGGNCCY	1 cut(s)	780
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	4 cut(s)	611, 689, 1215, 1296
EcoT14I	CCWWGG	2 cut(s)	454, 594
EcoT38I	GRGCYC	1 cut(s)	1268
ErhI	CCWWGG	2 cut(s)	454, 594
FaqI	GGGAC	3 cut(s)	41, 581, 1038
FblI	GTMKAC	1 cut(s)	272
FokI	GGATG	2 cut(s)	628, 1215
FriOI	GRGCYC	1 cut(s)	1268
FspBI	CTAG	4 cut(s)	455, 485, 1020, 1244
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	342, 579
HapII	CCGG	5 cut(s)	387, 392, 527, 580, 669
HinfI	GANTC	4 cut(s)	140, 569, 1167, 1220
HpaII	CCGG	5 cut(s)	387, 392, 527, 580, 669
HphI	GGTGA	4 cut(s)	53, 461, 542, 932
Hpy166II	GTNNAC	2 cut(s)	273, 1027
Hpy188I	TCNGA	3 cut(s)	139, 145, 429
Hpy188III	TCNNGA	6 cut(s)	40, 128, 252, 392, 406, 1171
Hpy8I	GTNNAC	2 cut(s)	273, 1027
Hpy99I	CGWCG	2 cut(s)	659, 1079
HpyAV	CCTTC	7 cut(s)	363, 412, 620, 691, 917, 1085, 1131
HpyCH4III	ACNGT	4 cut(s)	215, 891, 1079, 1311
HpyCH4IV	ACGT	2 cut(s)	186, 996
HpyCH4V	TGCA	6 cut(s)	22, 160, 266, 883, 887, 1060
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 836
HpyF3I	CTNAG	2 cut(s)	789, 1317
HpySE526I	ACGT	2 cut(s)	186, 996
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
LmnI	GCTCC	3 cut(s)	349, 1271, 1286
LweI	GCATC	2 cut(s)	31, 1216
MaeI	CTAG	4 cut(s)	455, 485, 1020, 1244
MaeII	ACGT	2 cut(s)	186, 996
MaeIII	GTNAC	5 cut(s)	202, 331, 449, 619, 1063
MalI	GATC	6 cut(s)	132, 323, 431, 534, 721, 978
MbiI	CCGCTC	1 cut(s)	717
MboI	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
MboII	GAAGA	2 cut(s)	865, 1124
MflI	RGATCY	2 cut(s)	321, 719
MhlI	GDGCHC	2 cut(s)	996, 1268
MluCI	AATT	4 cut(s)	11, 114, 434, 1325
MluI	ACGCGT	1 cut(s)	816
MlyI	GAGTC	4 cut(s)	134, 563, 1161, 1214
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	1 cut(s)	1103
MslI	CAYNNNNRTG	4 cut(s)	770, 918, 999, 1005
MspI	CCGG	5 cut(s)	387, 392, 527, 580, 669
MspR9I	CCNGG	6 cut(s)	528, 613, 670, 691, 1217, 1298
MvaI	CCWGG	4 cut(s)	613, 691, 1217, 1298
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	2 cut(s)	686, 836
NciI	CCSGG	2 cut(s)	528, 670
NdeII	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
NlaIV	GGNNCC	8 cut(s)	323, 351, 385, 721, 760, 781, 1054, 1085
NmuCI	GTSAC	3 cut(s)	449, 619, 1063
NspI	RCATGY	2 cut(s)	887, 1064
NspV	TTCGAA	1 cut(s)	1110
PaeI	GCATGC	1 cut(s)	887
PagI	TCATGA	1 cut(s)	127
PflFI	GACNNNGTC	1 cut(s)	1244
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	4 cut(s)	134, 563, 1161, 1214
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	4 cut(s)	134, 563, 1161, 1214
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	780
PshAI	GACNNNNGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	1103
PsiI	TTATAA	1 cut(s)	1330
Psp124BI	GAGCTC	1 cut(s)	1268
Psp5II	RGGWCCY	1 cut(s)	780
Psp6I	CCWGG	4 cut(s)	611, 689, 1215, 1296
PspCI	CACGTG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	4 cut(s)	611, 689, 1215, 1296
PspN4I	GGNNCC	8 cut(s)	323, 351, 385, 721, 760, 781, 1054, 1085
PspPI	GGNCC	6 cut(s)	181, 341, 389, 780, 1052, 1294
PspPPI	RGGWCCY	1 cut(s)	780
PsrI	GAACNNNNNNTAC	2 cut(s)	722, 754
PsuI	RGATCY	2 cut(s)	321, 719
PsyI	GACNNNGTC	1 cut(s)	1244
PvuI	CGATCG	1 cut(s)	432
RsaI	GTAC	6 cut(s)	293, 707, 737, 815, 1028, 1139
RsaNI	GTAC	6 cut(s)	292, 706, 736, 814, 1027, 1138
RseI	CAYNNNNRTG	4 cut(s)	770, 918, 999, 1005
Rsr2I	CGGWCCG	1 cut(s)	389
RsrII	CGGWCCG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	1268
SaqAI	TTAA	1 cut(s)	1103
Sau3AI	GATC	6 cut(s)	130, 321, 429, 532, 719, 976
Sau96I	GGNCC	6 cut(s)	181, 341, 389, 780, 1052, 1294
SchI	GAGTC	4 cut(s)	134, 563, 1161, 1214
ScrFI	CCNGG	6 cut(s)	528, 613, 670, 691, 1217, 1298
SduI	GDGCHC	2 cut(s)	996, 1268
SfaNI	GCATC	2 cut(s)	31, 1216
SfcI	CTRYAG	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	1110
SinI	GGWCC	5 cut(s)	181, 389, 780, 1052, 1294
SmiMI	CAYNNNNRTG	4 cut(s)	770, 918, 999, 1005
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SphI	GCATGC	1 cut(s)	887
Sse9I	AATT	4 cut(s)	11, 114, 434, 1325
SsiI	CCGC	3 cut(s)	607, 717, 1292
SspMI	CTAG	4 cut(s)	455, 485, 1020, 1244
SstI	GAGCTC	1 cut(s)	1268
StyD4I	CCNGG	6 cut(s)	526, 611, 668, 689, 1215, 1296
StyI	CCWWGG	2 cut(s)	454, 594
TaaI	ACNGT	4 cut(s)	215, 891, 1079, 1311
TaiI	ACGT	2 cut(s)	189, 999
TaqI	TCGA	5 cut(s)	432, 642, 728, 806, 1110
TasI	AATT	4 cut(s)	11, 114, 434, 1325
TatI	WGTACW	3 cut(s)	735, 1026, 1137
Tru1I	TTAA	1 cut(s)	1103
Tru9I	TTAA	1 cut(s)	1103
TscAI	CASTG	2 cut(s)	174, 913
TseFI	GTSAC	3 cut(s)	449, 619, 1063
Tsp45I	GTSAC	3 cut(s)	449, 619, 1063
TspDTI	ATGAA	5 cut(s)	23, 186, 294, 989, 1197
TspRI	CASTG	2 cut(s)	174, 913
Tth111I	GACNNNGTC	1 cut(s)	1244
VpaK11BI	GGWCC	5 cut(s)	181, 389, 780, 1052, 1294
VspI	ATTAAT	1 cut(s)	1103
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	2 cut(s)	887, 1064
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 335
XmaJI	CCTAGG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	4 cut(s)	455, 485, 1020, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.