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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52870 |
| fragaria_vesca | FvH4_6g18220 |
| malus_domestica | MD07G1066300.v1.1 MD12G1022200.v1.1 MD14G1019000.v1.1 |
| prunus_persica | Prupe.2G083500_v2.0.a1 Prupe.2G083500_v2.0.a1 Prupe.7G114500_v2.0.a1 Prupe.7G114500_v2.0.a1 |
| pyrus_communis | pycom12g02060 pycom14g01880 |
| rosa_chinensis | RchiOBHm_Chr3g0472641 |
| rosa_laevigata | RLG00000024067 |
| rosa_multiflora | Rmu_sc0003510.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00408760 |
| rosa_rugosa | Rorug03G0126800 |
| rosa_samantha | Rh3AG179500 Rh3BG205400 Rh3CG202500 Rh3DG170400 |
| rosa_wichuraiana | Rw3G016320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1131 |
| Acc36I | ACCTGC | 1 cut(s) | 450 |
| AccB1I | GGYRCC | 1 cut(s) | 50 |
| AccI | GTMKAC | 4 cut(s) | 78, 168, 369, 1235 |
| AccII | CGCG | 3 cut(s) | 110, 122, 187 |
| AciI | CCGC | 5 cut(s) | 146, 149, 187, 846, 1151 |
| AclWI | GGATC | 5 cut(s) | 410, 537, 682, 701, 997 |
| AcyI | GRCGYC | 1 cut(s) | 51 |
| AdeI | CACNNNGTG | 1 cut(s) | 104 |
| AfaI | GTAC | 4 cut(s) | 159, 184, 268, 709 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1256 |
| AflII | CTTAAG | 1 cut(s) | 557 |
| AgeI | ACCGGT | 1 cut(s) | 426 |
| AgsI | TTSAA | 4 cut(s) | 116, 334, 407, 715 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| Alw26I | GTCTC | 5 cut(s) | 16, 286, 878, 1031, 1323 |
| AlwI | GGATC | 5 cut(s) | 410, 537, 682, 701, 997 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 206, 1040 |
| Ama87I | CYCGRG | 3 cut(s) | 13, 289, 887 |
| AoxI | GGCC | 2 cut(s) | 387, 857 |
| ApeKI | GCWGC | 3 cut(s) | 562, 791, 1265 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1175, 1207 |
| AsiGI | ACCGGT | 1 cut(s) | 426 |
| AspLEI | GCGC | 3 cut(s) | 53, 112, 122 |
| AspS9I | GGNCC | 2 cut(s) | 584, 1247 |
| AsuC2I | CCSGG | 1 cut(s) | 1354 |
| AsuHPI | GGTGA | 3 cut(s) | 116, 163, 814 |
| AvaI | CYCGRG | 3 cut(s) | 13, 289, 887 |
| AvaII | GGWCC | 2 cut(s) | 584, 1247 |
| BanI | GGYRCC | 1 cut(s) | 50 |
| BanII | GRGCYC | 1 cut(s) | 228 |
| BbsI | GAAGAC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvI | GCAGC | 3 cut(s) | 574, 778, 1277 |
| BccI | CCATC | 3 cut(s) | 235, 309, 762 |
| BceAI | ACGGC | 3 cut(s) | 22, 64, 844 |
| BclI | TGATCA | 1 cut(s) | 615 |
| BcnI | CCSGG | 1 cut(s) | 1354 |
| BcoDI | GTCTC | 5 cut(s) | 16, 286, 878, 1031, 1323 |
| BfaI | CTAG | 5 cut(s) | 138, 312, 420, 917, 942 |
| BfmI | CTRYAG | 2 cut(s) | 169, 363 |
| BfoI | RGCGCY | 1 cut(s) | 54 |
| BfrI | CTTAAG | 1 cut(s) | 557 |
| BfuAI | ACCTGC | 1 cut(s) | 450 |
| BisI | GCNGC | 6 cut(s) | 147, 188, 563, 792, 1151, 1266 |
| BlsI | GCNGC | 6 cut(s) | 148, 189, 564, 793, 1152, 1267 |
| BmcAI | AGTACT | 1 cut(s) | 709 |
| Bme1390I | CCNGG | 1 cut(s) | 1354 |
| Bme18I | GGWCC | 2 cut(s) | 584, 1247 |
| BmeT110I | CYCGRG | 3 cut(s) | 13, 289, 887 |
| BmgT120I | GGNCC | 2 cut(s) | 584, 1247 |
| BmiI | GGNNCC | 4 cut(s) | 52, 320, 752, 1002 |
| BmrFI | CCNGG | 1 cut(s) | 1354 |
| BmsI | GCATC | 1 cut(s) | 466 |
| BoxI | GACNNNNGTC | 1 cut(s) | 870 |
| BpiI | GAAGAC | 1 cut(s) | 24 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 48, 80, 80, 112 |
| BpmI | CTGGAG | 1 cut(s) | 795 |
| BpuEI | CTTGAG | 4 cut(s) | 573, 745, 809, 1100 |
| BpuMI | CCSGG | 1 cut(s) | 1354 |
| BsaBI | GATNNNNATC | 1 cut(s) | 528 |
| BsaHI | GRCGYC | 1 cut(s) | 51 |
| BsaI | GGTCTC | 1 cut(s) | 286 |
| BsaJI | CCNNGG | 1 cut(s) | 545 |
| BsaWI | WCCGGW | 5 cut(s) | 73, 426, 997, 1276, 1329 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 166, 196 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1256 |
| Bse118I | RCCGGY | 2 cut(s) | 426, 728 |
| Bse1I | ACTGG | 2 cut(s) | 503, 652 |
| Bse3DI | GCAATG | 1 cut(s) | 572 |
| Bse8I | GATNNNNATC | 1 cut(s) | 528 |
| BseDI | CCNNGG | 1 cut(s) | 545 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseJI | GATNNNNATC | 1 cut(s) | 528 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1256 |
| BseMI | GCAATG | 1 cut(s) | 572 |
| BseMII | CTCAG | 4 cut(s) | 392, 910, 1131, 1300 |
| BseNI | ACTGG | 2 cut(s) | 503, 652 |
| BseRI | GAGGAG | 3 cut(s) | 528, 792, 1097 |
| BseXI | GCAGC | 3 cut(s) | 574, 778, 1277 |
| BseYI | CCCAGC | 1 cut(s) | 794 |
| BsgI | GTGCAG | 1 cut(s) | 1284 |
| Bsh1236I | CGCG | 3 cut(s) | 110, 122, 187 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1353 |
| BshFI | GGCC | 2 cut(s) | 389, 859 |
| BshNI | GGYRCC | 1 cut(s) | 50 |
| BshTI | ACCGGT | 1 cut(s) | 426 |
| BsiEI | CGRYCG | 1 cut(s) | 1353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BsiHKCI | CYCGRG | 3 cut(s) | 13, 289, 887 |
| BsiSI | CCGG | 8 cut(s) | 54, 74, 427, 729, 998, 1277, 1330, 1353 |
| BsiWI | CGTACG | 1 cut(s) | 182 |
| BslFI | GGGAC | 1 cut(s) | 1224 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1256 |
| BsmAI | GTCTC | 5 cut(s) | 16, 286, 878, 1031, 1323 |
| BsmFI | GGGAC | 1 cut(s) | 1224 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 2 cut(s) | 389, 859 |
| Bso31I | GGTCTC | 1 cut(s) | 286 |
| BsoBI | CYCGRG | 3 cut(s) | 13, 289, 887 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp143I | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| BspACI | CCGC | 5 cut(s) | 146, 149, 187, 846, 1151 |
| BspANI | GGCC | 2 cut(s) | 389, 859 |
| BspCNI | CTCAG | 4 cut(s) | 391, 909, 1130, 1299 |
| BspFNI | CGCG | 3 cut(s) | 110, 122, 187 |
| BspLI | GGNNCC | 4 cut(s) | 52, 320, 752, 1002 |
| BspMI | ACCTGC | 1 cut(s) | 450 |
| BspPI | GGATC | 5 cut(s) | 410, 537, 682, 701, 997 |
| BspQI | GCTCTTC | 1 cut(s) | 216 |
| BspT107I | GGYRCC | 1 cut(s) | 50 |
| BspTI | CTTAAG | 1 cut(s) | 557 |
| BspTNI | GGTCTC | 1 cut(s) | 286 |
| BsrDI | GCAATG | 1 cut(s) | 572 |
| BsrFI | RCCGGY | 2 cut(s) | 426, 728 |
| BsrI | ACTGG | 2 cut(s) | 503, 652 |
| BssAI | RCCGGY | 2 cut(s) | 426, 728 |
| BssECI | CCNNGG | 1 cut(s) | 545 |
| BssMI | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| BssNI | GRCGYC | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 6 cut(s) | 104, 323, 1005, 1058, 1069, 1191 |
| Bst6I | CTCTTC | 2 cut(s) | 216, 594 |
| BstACI | GRCGYC | 1 cut(s) | 51 |
| BstAFI | CTTAAG | 1 cut(s) | 557 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 6 cut(s) | 342, 378, 896, 1117, 1169, 1286 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstFNI | CGCG | 3 cut(s) | 110, 122, 187 |
| BstH2I | RGCGCY | 1 cut(s) | 54 |
| BstHHI | GCGC | 3 cut(s) | 53, 112, 122 |
| BstKTI | GATC | 7 cut(s) | 418, 532, 618, 677, 696, 992, 1199 |
| BstMAI | GTCTC | 5 cut(s) | 16, 286, 878, 1031, 1323 |
| BstMBI | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| BstMCI | CGRYCG | 1 cut(s) | 1353 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 232, 562, 779, 788 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 870 |
| BstSCI | CCNGG | 1 cut(s) | 1352 |
| BstSFI | CTRYAG | 2 cut(s) | 169, 363 |
| BstUI | CGCG | 3 cut(s) | 110, 122, 187 |
| BstV1I | GCAGC | 3 cut(s) | 574, 778, 1277 |
| BstV2I | GAAGAC | 1 cut(s) | 24 |
| BstX2I | RGATCY | 3 cut(s) | 529, 693, 989 |
| BstYI | RGATCY | 3 cut(s) | 529, 693, 989 |
| BsuRI | GGCC | 2 cut(s) | 389, 859 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| BtsI | GCAGTG | 1 cut(s) | 915 |
| BtsIMutI | CAGTG | 3 cut(s) | 915, 1074, 1223 |
| BveI | ACCTGC | 1 cut(s) | 450 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| CaiI | CAGNNNCTG | 2 cut(s) | 206, 1040 |
| CfoI | GCGC | 3 cut(s) | 53, 112, 122 |
| Cfr10I | RCCGGY | 2 cut(s) | 426, 728 |
| Cfr13I | GGNCC | 2 cut(s) | 584, 1247 |
| CseI | GACGC | 1 cut(s) | 116 |
| Csp6I | GTAC | 4 cut(s) | 158, 183, 267, 708 |
| CspAI | ACCGGT | 1 cut(s) | 426 |
| CviAII | CATG | 1 cut(s) | 671 |
| CviQI | GTAC | 4 cut(s) | 158, 183, 267, 708 |
| DdeI | CTNAG | 6 cut(s) | 342, 378, 896, 1117, 1169, 1286 |
| DinI | GGCGCC | 1 cut(s) | 52 |
| DpnI | GATC | 7 cut(s) | 417, 531, 617, 676, 695, 991, 1198 |
| DpnII | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| DraIII | CACNNNGTG | 1 cut(s) | 104 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1131 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1131 |
| Eam1104I | CTCTTC | 2 cut(s) | 216, 594 |
| EarI | CTCTTC | 2 cut(s) | 216, 594 |
| Ecl136II | GAGCTC | 1 cut(s) | 226 |
| Eco24I | GRGCYC | 1 cut(s) | 228 |
| Eco31I | GGTCTC | 1 cut(s) | 286 |
| Eco32I | GATATC | 1 cut(s) | 578 |
| Eco47I | GGWCC | 2 cut(s) | 584, 1247 |
| Eco53kI | GAGCTC | 1 cut(s) | 226 |
| Eco88I | CYCGRG | 3 cut(s) | 13, 289, 887 |
| EcoICRI | GAGCTC | 1 cut(s) | 226 |
| EcoRV | GATATC | 1 cut(s) | 578 |
| EcoT22I | ATGCAT | 2 cut(s) | 572, 672 |
| EcoT38I | GRGCYC | 1 cut(s) | 228 |
| EgeI | GGCGCC | 1 cut(s) | 52 |
| EheI | GGCGCC | 1 cut(s) | 52 |
| FaeI | CATG | 1 cut(s) | 674 |
| FaqI | GGGAC | 1 cut(s) | 1224 |
| FatI | CATG | 1 cut(s) | 670 |
| FbaI | TGATCA | 1 cut(s) | 615 |
| FblI | GTMKAC | 4 cut(s) | 78, 168, 369, 1235 |
| Fnu4HI | GCNGC | 6 cut(s) | 147, 188, 563, 792, 1151, 1266 |
| FokI | GGATG | 1 cut(s) | 518 |
| FriOI | GRGCYC | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 6 cut(s) | 147, 188, 563, 792, 1151, 1266 |
| FspBI | CTAG | 5 cut(s) | 138, 312, 420, 917, 942 |
| GlaI | GCGC | 3 cut(s) | 52, 111, 121 |
| GluI | GCNGC | 6 cut(s) | 147, 188, 563, 792, 1151, 1266 |
| GsaI | CCCAGC | 1 cut(s) | 798 |
| GsuI | CTGGAG | 1 cut(s) | 795 |
| HaeII | RGCGCY | 1 cut(s) | 54 |
| HaeIII | GGCC | 2 cut(s) | 389, 859 |
| HapII | CCGG | 8 cut(s) | 54, 74, 427, 729, 998, 1277, 1330, 1353 |
| HgaI | GACGC | 1 cut(s) | 116 |
| HhaI | GCGC | 3 cut(s) | 53, 112, 122 |
| Hin1I | GRCGYC | 1 cut(s) | 51 |
| Hin1II | CATG | 1 cut(s) | 674 |
| Hin6I | GCGC | 3 cut(s) | 51, 110, 120 |
| HinP1I | GCGC | 3 cut(s) | 51, 110, 120 |
| HincII | GTYRAC | 5 cut(s) | 370, 645, 811, 1236, 1312 |
| HindII | GTYRAC | 5 cut(s) | 370, 645, 811, 1236, 1312 |
| HindIII | AAGCTT | 3 cut(s) | 554, 763, 1358 |
| HinfI | GANTC | 6 cut(s) | 61, 131, 203, 950, 1132, 1254 |
| HpaI | GTTAAC | 2 cut(s) | 645, 1312 |
| HpaII | CCGG | 8 cut(s) | 54, 74, 427, 729, 998, 1277, 1330, 1353 |
| HphI | GGTGA | 3 cut(s) | 116, 163, 814 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 291, 312, 590, 715, 826, 875, 1194 |
| HpyAV | CCTTC | 6 cut(s) | 110, 157, 346, 617, 674, 741 |
| HpyCH4III | ACNGT | 6 cut(s) | 104, 323, 1005, 1058, 1069, 1191 |
| HpyCH4IV | ACGT | 1 cut(s) | 1146 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 445, 570, 670, 839, 934, 1265 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 232, 562, 779, 788 |
| HpyF3I | CTNAG | 6 cut(s) | 342, 378, 896, 1117, 1169, 1286 |
| HpySE526I | ACGT | 1 cut(s) | 1146 |
| Hsp92I | GRCGYC | 1 cut(s) | 51 |
| Hsp92II | CATG | 1 cut(s) | 674 |
| HspAI | GCGC | 3 cut(s) | 51, 110, 120 |
| KasI | GGCGCC | 1 cut(s) | 50 |
| Ksp22I | TGATCA | 1 cut(s) | 615 |
| KspAI | GTTAAC | 2 cut(s) | 645, 1312 |
| Kzo9I | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| LguI | GCTCTTC | 1 cut(s) | 216 |
| LmnI | GCTCC | 1 cut(s) | 779 |
| Lsp1109I | GCAGC | 3 cut(s) | 574, 778, 1277 |
| LweI | GCATC | 1 cut(s) | 466 |
| MaeI | CTAG | 5 cut(s) | 138, 312, 420, 917, 942 |
| MaeII | ACGT | 1 cut(s) | 1146 |
| MaeIII | GTNAC | 3 cut(s) | 104, 1058, 1221 |
| MalI | GATC | 7 cut(s) | 417, 531, 617, 676, 695, 991, 1198 |
| MboI | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| MboII | GAAGA | 6 cut(s) | 24, 233, 470, 611, 640, 959 |
| MfeI | CAATTG | 1 cut(s) | 1205 |
| MflI | RGATCY | 3 cut(s) | 529, 693, 989 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MluCI | AATT | 2 cut(s) | 383, 1205 |
| Mly113I | GGCGCC | 1 cut(s) | 51 |
| MlyI | GAGTC | 3 cut(s) | 125, 197, 1141 |
| MmeI | TCCRAC | 3 cut(s) | 483, 490, 1005 |
| Mph1103I | ATGCAT | 2 cut(s) | 572, 672 |
| MseI | TTAA | 7 cut(s) | 258, 534, 558, 644, 975, 1007, 1311 |
| MslI | CAYNNNNRTG | 2 cut(s) | 429, 1228 |
| MspA1I | CMGCKG | 1 cut(s) | 1268 |
| MspCI | CTTAAG | 1 cut(s) | 557 |
| MspI | CCGG | 8 cut(s) | 54, 74, 427, 729, 998, 1277, 1330, 1353 |
| MspR9I | CCNGG | 1 cut(s) | 1354 |
| MunI | CAATTG | 1 cut(s) | 1205 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvnI | CGCG | 3 cut(s) | 110, 122, 187 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 232, 562, 779, 788 |
| NarI | GGCGCC | 1 cut(s) | 51 |
| NciI | CCSGG | 1 cut(s) | 1354 |
| NdeII | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| NlaIII | CATG | 1 cut(s) | 674 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 320, 752, 1002 |
| NmuCI | GTSAC | 2 cut(s) | 104, 1221 |
| NsiI | ATGCAT | 2 cut(s) | 572, 672 |
| PaeR7I | CTCGAG | 2 cut(s) | 13, 289 |
| PciSI | GCTCTTC | 1 cut(s) | 216 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 187, 216, 873 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PfeI | GAWTC | 3 cut(s) | 61, 950, 1254 |
| Pfl23II | CGTACG | 1 cut(s) | 182 |
| PflFI | GACNNNGTC | 1 cut(s) | 206 |
| PinAI | ACCGGT | 1 cut(s) | 426 |
| PkrI | GCNGC | 6 cut(s) | 148, 189, 564, 793, 1152, 1267 |
| PleI | GAGTC | 3 cut(s) | 125, 197, 1140 |
| PluTI | GGCGCC | 1 cut(s) | 54 |
| PpsI | GAGTC | 3 cut(s) | 125, 197, 1140 |
| PshAI | GACNNNNGTC | 1 cut(s) | 870 |
| Psp124BI | GAGCTC | 1 cut(s) | 228 |
| PspFI | CCCAGC | 1 cut(s) | 794 |
| PspLI | CGTACG | 1 cut(s) | 182 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 320, 752, 1002 |
| PspPI | GGNCC | 2 cut(s) | 584, 1247 |
| PstNI | CAGNNNCTG | 2 cut(s) | 206, 1040 |
| PsuI | RGATCY | 3 cut(s) | 529, 693, 989 |
| PsyI | GACNNNGTC | 1 cut(s) | 206 |
| PvuII | CAGCTG | 1 cut(s) | 1268 |
| RsaI | GTAC | 4 cut(s) | 159, 184, 268, 709 |
| RsaNI | GTAC | 4 cut(s) | 158, 183, 267, 708 |
| RseI | CAYNNNNRTG | 2 cut(s) | 429, 1228 |
| SacI | GAGCTC | 1 cut(s) | 228 |
| SalI | GTCGAC | 2 cut(s) | 368, 1234 |
| SapI | GCTCTTC | 1 cut(s) | 216 |
| SaqAI | TTAA | 7 cut(s) | 258, 534, 558, 644, 975, 1007, 1311 |
| SatI | GCNGC | 6 cut(s) | 147, 188, 563, 792, 1151, 1266 |
| Sau3AI | GATC | 7 cut(s) | 415, 529, 615, 674, 693, 989, 1196 |
| Sau96I | GGNCC | 2 cut(s) | 584, 1247 |
| ScaI | AGTACT | 1 cut(s) | 709 |
| SchI | GAGTC | 3 cut(s) | 125, 197, 1141 |
| ScrFI | CCNGG | 1 cut(s) | 1354 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SfaNI | GCATC | 1 cut(s) | 466 |
| SfcI | CTRYAG | 2 cut(s) | 169, 363 |
| SfoI | GGCGCC | 1 cut(s) | 52 |
| Sfr274I | CTCGAG | 2 cut(s) | 13, 289 |
| SinI | GGWCC | 2 cut(s) | 584, 1247 |
| SlaI | CTCGAG | 2 cut(s) | 13, 289 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 429, 1228 |
| SmlI | CTYRAG | 7 cut(s) | 13, 289, 557, 588, 760, 824, 1079 |
| SmoI | CTYRAG | 7 cut(s) | 13, 289, 557, 588, 760, 824, 1079 |
| Sse9I | AATT | 2 cut(s) | 383, 1205 |
| SsiI | CCGC | 5 cut(s) | 146, 149, 187, 846, 1151 |
| SspDI | GGCGCC | 1 cut(s) | 50 |
| SspMI | CTAG | 5 cut(s) | 138, 312, 420, 917, 942 |
| SstI | GAGCTC | 1 cut(s) | 228 |
| StyD4I | CCNGG | 1 cut(s) | 1352 |
| TaaI | ACNGT | 6 cut(s) | 104, 323, 1005, 1058, 1069, 1191 |
| TaiI | ACGT | 1 cut(s) | 1149 |
| TaqI | TCGA | 8 cut(s) | 14, 21, 134, 282, 290, 369, 876, 1235 |
| TasI | AATT | 2 cut(s) | 383, 1205 |
| TatI | WGTACW | 2 cut(s) | 157, 707 |
| TauI | GCSGC | 3 cut(s) | 149, 190, 1153 |
| TfiI | GAWTC | 3 cut(s) | 61, 950, 1254 |
| Tru1I | TTAA | 7 cut(s) | 258, 534, 558, 644, 975, 1007, 1311 |
| Tru9I | TTAA | 7 cut(s) | 258, 534, 558, 644, 975, 1007, 1311 |
| TscAI | CASTG | 3 cut(s) | 915, 1074, 1230 |
| TseFI | GTSAC | 2 cut(s) | 104, 1221 |
| TseI | GCWGC | 3 cut(s) | 562, 791, 1265 |
| Tsp45I | GTSAC | 2 cut(s) | 104, 1221 |
| TspDTI | ATGAA | 1 cut(s) | 471 |
| TspGWI | ACGGA | 3 cut(s) | 999, 1077, 1108 |
| TspRI | CASTG | 3 cut(s) | 915, 1074, 1230 |
| Tth111I | GACNNNGTC | 1 cut(s) | 206 |
| Vha464I | CTTAAG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 2 cut(s) | 584, 1247 |
| XbaI | TCTAGA | 1 cut(s) | 311 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 495 |
| XhoI | CTCGAG | 2 cut(s) | 13, 289 |
| XmiI | GTMKAC | 4 cut(s) | 78, 168, 369, 1235 |
| XspI | CTAG | 5 cut(s) | 138, 312, 420, 917, 942 |
| ZrmI | AGTACT | 1 cut(s) | 709 |
| Zsp2I | ATGCAT | 2 cut(s) | 572, 672 |