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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52870 |
| fragaria_vesca | FvH4_6g18220 |
| malus_domestica | MD07G1066300.v1.1 MD12G1022200.v1.1 MD14G1019000.v1.1 |
| prunus_persica | Prupe.2G083500_v2.0.a1 Prupe.2G083500_v2.0.a1 Prupe.7G114500_v2.0.a1 Prupe.7G114500_v2.0.a1 |
| pyrus_communis | pycom12g02060 pycom14g01880 |
| rosa_chinensis | RchiOBHm_Chr3g0472641 |
| rosa_laevigata | RLG00000024067 |
| rosa_multiflora | Rmu_sc0003510.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00408760 |
| rosa_rugosa | Rorug03G0126800 |
| rosa_samantha | Rh3AG179500 Rh3BG205400 Rh3CG202500 Rh3DG170400 |
| rosa_wichuraiana | Rw3G016320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 245 |
| Acc36I | ACCTGC | 1 cut(s) | 219 |
| AccB1I | GGYRCC | 1 cut(s) | 1130 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1298 |
| AccBSI | CCGCTC | 1 cut(s) | 172 |
| AccII | CGCG | 4 cut(s) | 90, 131, 158, 179 |
| AclI | AACGTT | 1 cut(s) | 358 |
| AclWI | GGATC | 4 cut(s) | 446, 718, 734, 1223 |
| AcoI | YGGCCR | 1 cut(s) | 517 |
| AcsI | RAATTY | 2 cut(s) | 852, 1034 |
| AcuI | CTGAAG | 6 cut(s) | 276, 878, 1071, 1134, 1154, 1206 |
| AcyI | GRCGYC | 2 cut(s) | 75, 405 |
| AfaI | GTAC | 3 cut(s) | 206, 304, 647 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 228, 1127, 1272, 1298, 1392, 1421, 1442 |
| AgsI | TTSAA | 4 cut(s) | 328, 370, 443, 1034 |
| Alw21I | GWGCWC | 3 cut(s) | 104, 264, 743 |
| Alw26I | GTCTC | 3 cut(s) | 28, 283, 1451 |
| AlwI | GGATC | 4 cut(s) | 446, 718, 734, 1223 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 421, 515 |
| Ama87I | CYCGRG | 1 cut(s) | 25 |
| AoxI | GGCC | 4 cut(s) | 126, 174, 517, 1338 |
| ApeKI | GCWGC | 3 cut(s) | 193, 824, 839 |
| ApoI | RAATTY | 2 cut(s) | 852, 1034 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 53 |
| AspLEI | GCGC | 2 cut(s) | 160, 228 |
| AspS9I | GGNCC | 4 cut(s) | 174, 219, 620, 1289 |
| AsuC2I | CCSGG | 2 cut(s) | 162, 223 |
| AsuHPI | GGTGA | 6 cut(s) | 199, 776, 1362, 1404, 1425, 1520 |
| AsuNHI | GCTAGC | 1 cut(s) | 835 |
| AvaI | CYCGRG | 1 cut(s) | 25 |
| AvaII | GGWCC | 3 cut(s) | 219, 620, 1289 |
| BaeGI | GKGCMC | 1 cut(s) | 581 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 286, 319 |
| BalI | TGGCCA | 1 cut(s) | 519 |
| BanI | GGYRCC | 1 cut(s) | 1130 |
| BanII | GRGCYC | 2 cut(s) | 104, 264 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 948, 980 |
| BauI | CACGAG | 1 cut(s) | 626 |
| BbsI | GAAGAC | 1 cut(s) | 1160 |
| Bbv12I | GWGCWC | 3 cut(s) | 104, 264, 743 |
| BbvI | GCAGC | 3 cut(s) | 180, 811, 851 |
| BccI | CCATC | 6 cut(s) | 45, 545, 653, 795, 995, 1390 |
| BceAI | ACGGC | 2 cut(s) | 88, 230 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 585, 619 |
| BcnI | CCSGG | 2 cut(s) | 162, 223 |
| BcoDI | GTCTC | 3 cut(s) | 28, 283, 1451 |
| BfaI | CTAG | 4 cut(s) | 795, 836, 1059, 1461 |
| BfmI | CTRYAG | 3 cut(s) | 194, 1208, 1387 |
| BfuAI | ACCTGC | 1 cut(s) | 219 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 182, 251 |
| BisI | GCNGC | 6 cut(s) | 129, 177, 194, 342, 825, 840 |
| BlsI | GCNGC | 6 cut(s) | 130, 178, 195, 343, 826, 841 |
| Bme1390I | CCNGG | 2 cut(s) | 162, 223 |
| Bme18I | GGWCC | 3 cut(s) | 219, 620, 1289 |
| BmeT110I | CYCGRG | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 4 cut(s) | 174, 219, 620, 1289 |
| BmiI | GGNNCC | 2 cut(s) | 221, 1132 |
| BmrFI | CCNGG | 2 cut(s) | 162, 223 |
| BmsI | GCATC | 4 cut(s) | 502, 1264, 1439, 1478 |
| BmtI | GCTAGC | 1 cut(s) | 839 |
| BpiI | GAAGAC | 1 cut(s) | 1160 |
| BpmI | CTGGAG | 3 cut(s) | 26, 705, 828 |
| BpuEI | CTTGAG | 3 cut(s) | 554, 914, 1253 |
| BpuMI | CCSGG | 2 cut(s) | 162, 223 |
| BsaHI | GRCGYC | 2 cut(s) | 75, 405 |
| BsaI | GGTCTC | 1 cut(s) | 1451 |
| BsaJI | CCNNGG | 5 cut(s) | 138, 161, 455, 1341, 1504 |
| BsaWI | WCCGGW | 1 cut(s) | 216 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 228, 1127, 1272, 1298, 1392, 1421, 1442 |
| Bse1I | ACTGG | 6 cut(s) | 43, 426, 440, 539, 688, 1319 |
| Bse3DI | GCAATG | 1 cut(s) | 608 |
| BseDI | CCNNGG | 5 cut(s) | 138, 161, 455, 1341, 1504 |
| BseGI | GGATG | 2 cut(s) | 1382, 1478 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 228, 1127, 1272, 1298, 1392, 1421, 1442 |
| BseMI | GCAATG | 1 cut(s) | 608 |
| BseMII | CTCAG | 5 cut(s) | 428, 1059, 1208, 1319, 1506 |
| BseNI | ACTGG | 6 cut(s) | 43, 426, 440, 539, 688, 1319 |
| BseRI | GAGGAG | 1 cut(s) | 825 |
| BseSI | GKGCMC | 1 cut(s) | 581 |
| BseXI | GCAGC | 3 cut(s) | 180, 811, 851 |
| Bsh1236I | CGCG | 4 cut(s) | 90, 131, 158, 179 |
| BshFI | GGCC | 4 cut(s) | 128, 176, 519, 1340 |
| BshNI | GGYRCC | 1 cut(s) | 1130 |
| BsiHKAI | GWGCWC | 3 cut(s) | 104, 264, 743 |
| BsiHKCI | CYCGRG | 1 cut(s) | 25 |
| BsiSI | CCGG | 4 cut(s) | 161, 217, 223, 828 |
| BslFI | GGGAC | 5 cut(s) | 97, 120, 1036, 1103, 1449 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 228, 1127, 1272, 1298, 1392, 1421, 1442 |
| BsmAI | GTCTC | 3 cut(s) | 28, 283, 1451 |
| BsmBI | CGTCTC | 1 cut(s) | 28 |
| BsmFI | GGGAC | 5 cut(s) | 97, 120, 1036, 1103, 1449 |
| BsmI | GAATGC | 1 cut(s) | 376 |
| BsnI | GGCC | 4 cut(s) | 128, 176, 519, 1340 |
| Bso31I | GGTCTC | 1 cut(s) | 1451 |
| BsoBI | CYCGRG | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 4 cut(s) | 104, 264, 581, 743 |
| Bsp1407I | TGTACA | 1 cut(s) | 204 |
| Bsp143I | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| Bsp19I | CCATGG | 1 cut(s) | 1504 |
| BspANI | GGCC | 4 cut(s) | 128, 176, 519, 1340 |
| BspCNI | CTCAG | 5 cut(s) | 427, 1060, 1207, 1320, 1505 |
| BspFNI | CGCG | 4 cut(s) | 90, 131, 158, 179 |
| BspLI | GGNNCC | 2 cut(s) | 221, 1132 |
| BspMAI | CTGCAG | 2 cut(s) | 198, 1212 |
| BspMI | ACCTGC | 1 cut(s) | 219 |
| BspOI | GCTAGC | 1 cut(s) | 839 |
| BspPI | GGATC | 4 cut(s) | 446, 718, 734, 1223 |
| BspQI | GCTCTTC | 2 cut(s) | 162, 252 |
| BspT107I | GGYRCC | 1 cut(s) | 1130 |
| BspTNI | GGTCTC | 1 cut(s) | 1451 |
| BsrBI | CCGCTC | 1 cut(s) | 172 |
| BsrDI | GCAATG | 1 cut(s) | 608 |
| BsrGI | TGTACA | 1 cut(s) | 204 |
| BsrI | ACTGG | 6 cut(s) | 43, 426, 440, 539, 688, 1319 |
| BssECI | CCNNGG | 5 cut(s) | 138, 161, 455, 1341, 1504 |
| BssMI | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| BssNI | GRCGYC | 2 cut(s) | 75, 405 |
| BssSI | CACGAG | 1 cut(s) | 626 |
| BssT1I | CCWWGG | 4 cut(s) | 138, 455, 1341, 1504 |
| Bst2BI | CACGAG | 1 cut(s) | 626 |
| Bst4CI | ACNGT | 2 cut(s) | 302, 905 |
| Bst6I | CTCTTC | 2 cut(s) | 162, 252 |
| BstACI | GRCGYC | 2 cut(s) | 75, 405 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 478 |
| BstAUI | TGTACA | 1 cut(s) | 204 |
| BstC8I | GCNNGC | 8 cut(s) | 174, 273, 479, 517, 521, 837, 1233, 1338 |
| BstDSI | CCRYGG | 1 cut(s) | 1504 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1390 |
| BstF5I | GGATG | 2 cut(s) | 1382, 1478 |
| BstFNI | CGCG | 4 cut(s) | 90, 131, 158, 179 |
| BstHHI | GCGC | 2 cut(s) | 160, 228 |
| BstKTI | GATC | 7 cut(s) | 454, 568, 587, 713, 729, 1218, 1370 |
| BstMAI | GTCTC | 3 cut(s) | 28, 283, 1451 |
| BstMBI | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 182, 242, 251, 268, 478, 598, 812, 821, 1406 |
| BstNSI | RCATGY | 1 cut(s) | 485 |
| BstSCI | CCNGG | 2 cut(s) | 160, 221 |
| BstSFI | CTRYAG | 3 cut(s) | 194, 1208, 1387 |
| BstSLI | GKGCMC | 1 cut(s) | 581 |
| BstUI | CGCG | 4 cut(s) | 90, 131, 158, 179 |
| BstV1I | GCAGC | 3 cut(s) | 180, 811, 851 |
| BstV2I | GAAGAC | 1 cut(s) | 1160 |
| BstX2I | RGATCY | 1 cut(s) | 726 |
| BstYI | RGATCY | 1 cut(s) | 726 |
| BsuRI | GGCC | 4 cut(s) | 128, 176, 519, 1340 |
| BtgI | CCRYGG | 1 cut(s) | 1504 |
| BtgZI | GCGATG | 1 cut(s) | 1455 |
| BtsCI | GGATG | 2 cut(s) | 1382, 1478 |
| BtsIMutI | CAGTG | 2 cut(s) | 433, 1110 |
| BveI | ACCTGC | 1 cut(s) | 219 |
| Cac8I | GCNNGC | 8 cut(s) | 174, 273, 479, 517, 521, 837, 1233, 1338 |
| CaiI | CAGNNNCTG | 2 cut(s) | 421, 515 |
| CfoI | GCGC | 2 cut(s) | 160, 228 |
| Cfr13I | GGNCC | 4 cut(s) | 174, 219, 620, 1289 |
| CseI | GACGC | 5 cut(s) | 10, 64, 164, 168, 413 |
| Csp6I | GTAC | 3 cut(s) | 205, 303, 646 |
| CviAII | CATG | 3 cut(s) | 482, 848, 1505 |
| CviQI | GTAC | 3 cut(s) | 205, 303, 646 |
| DpnI | GATC | 7 cut(s) | 453, 567, 586, 712, 728, 1217, 1369 |
| DpnII | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 245 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 245 |
| EaeI | YGGCCR | 1 cut(s) | 517 |
| Eam1104I | CTCTTC | 2 cut(s) | 162, 252 |
| EarI | CTCTTC | 2 cut(s) | 162, 252 |
| EciI | GGCGGA | 1 cut(s) | 232 |
| Ecl136II | GAGCTC | 2 cut(s) | 102, 262 |
| Eco130I | CCWWGG | 4 cut(s) | 138, 455, 1341, 1504 |
| Eco147I | AGGCCT | 1 cut(s) | 1340 |
| Eco24I | GRGCYC | 2 cut(s) | 104, 264 |
| Eco31I | GGTCTC | 1 cut(s) | 1451 |
| Eco32I | GATATC | 2 cut(s) | 614, 1498 |
| Eco47I | GGWCC | 3 cut(s) | 219, 620, 1289 |
| Eco53kI | GAGCTC | 2 cut(s) | 102, 262 |
| Eco57I | CTGAAG | 6 cut(s) | 276, 878, 1071, 1134, 1154, 1206 |
| Eco88I | CYCGRG | 1 cut(s) | 25 |
| EcoICRI | GAGCTC | 2 cut(s) | 102, 262 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1390 |
| EcoRI | GAATTC | 1 cut(s) | 852 |
| EcoRV | GATATC | 2 cut(s) | 614, 1498 |
| EcoT14I | CCWWGG | 4 cut(s) | 138, 455, 1341, 1504 |
| EcoT22I | ATGCAT | 1 cut(s) | 608 |
| EcoT38I | GRGCYC | 2 cut(s) | 104, 264 |
| ErhI | CCWWGG | 4 cut(s) | 138, 455, 1341, 1504 |
| Esp3I | CGTCTC | 1 cut(s) | 28 |
| FaeI | CATG | 3 cut(s) | 485, 851, 1508 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 713, 745 |
| FaqI | GGGAC | 5 cut(s) | 97, 120, 1036, 1103, 1449 |
| FatI | CATG | 3 cut(s) | 481, 847, 1504 |
| FauI | CCCGC | 3 cut(s) | 95, 165, 1474 |
| Fnu4HI | GCNGC | 6 cut(s) | 129, 177, 194, 342, 825, 840 |
| FokI | GGATG | 2 cut(s) | 1369, 1465 |
| FriOI | GRGCYC | 2 cut(s) | 104, 264 |
| Fsp4HI | GCNGC | 6 cut(s) | 129, 177, 194, 342, 825, 840 |
| FspBI | CTAG | 4 cut(s) | 795, 836, 1059, 1461 |
| GlaI | GCGC | 2 cut(s) | 159, 227 |
| GluI | GCNGC | 6 cut(s) | 129, 177, 194, 342, 825, 840 |
| GsuI | CTGGAG | 3 cut(s) | 26, 705, 828 |
| HaeIII | GGCC | 4 cut(s) | 128, 176, 519, 1340 |
| HapII | CCGG | 4 cut(s) | 161, 217, 223, 828 |
| HgaI | GACGC | 5 cut(s) | 10, 64, 164, 168, 413 |
| HhaI | GCGC | 2 cut(s) | 160, 228 |
| Hin1I | GRCGYC | 2 cut(s) | 75, 405 |
| Hin1II | CATG | 3 cut(s) | 485, 851, 1508 |
| Hin6I | GCGC | 2 cut(s) | 158, 226 |
| HinP1I | GCGC | 2 cut(s) | 158, 226 |
| HincII | GTYRAC | 1 cut(s) | 1278 |
| HindII | GTYRAC | 1 cut(s) | 1278 |
| HinfI | GANTC | 7 cut(s) | 83, 133, 239, 335, 983, 1106, 1174 |
| HpaII | CCGG | 4 cut(s) | 161, 217, 223, 828 |
| HphI | GGTGA | 6 cut(s) | 199, 776, 1362, 1404, 1425, 1520 |
| Hpy166II | GTNNAC | 5 cut(s) | 154, 205, 946, 1064, 1278 |
| Hpy188III | TCNNGA | 5 cut(s) | 325, 571, 626, 908, 1087 |
| Hpy8I | GTNNAC | 5 cut(s) | 154, 205, 946, 1064, 1278 |
| Hpy99I | CGWCG | 2 cut(s) | 184, 251 |
| HpyAV | CCTTC | 2 cut(s) | 193, 825 |
| HpyCH4III | ACNGT | 2 cut(s) | 302, 905 |
| HpyCH4IV | ACGT | 2 cut(s) | 358, 648 |
| HpyCH4V | TGCA | 5 cut(s) | 196, 481, 606, 872, 1210 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 182, 242, 251, 268, 478, 598, 812, 821, 1406 |
| HpySE526I | ACGT | 2 cut(s) | 358, 648 |
| Hsp92I | GRCGYC | 2 cut(s) | 75, 405 |
| Hsp92II | CATG | 3 cut(s) | 485, 851, 1508 |
| HspAI | GCGC | 2 cut(s) | 158, 226 |
| Kzo9I | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| LguI | GCTCTTC | 2 cut(s) | 162, 252 |
| LmnI | GCTCC | 5 cut(s) | 99, 107, 812, 1060, 1283 |
| Lsp1109I | GCAGC | 3 cut(s) | 180, 811, 851 |
| LweI | GCATC | 4 cut(s) | 502, 1264, 1439, 1478 |
| MaeI | CTAG | 4 cut(s) | 795, 836, 1059, 1461 |
| MaeII | ACGT | 2 cut(s) | 358, 648 |
| MaeIII | GTNAC | 1 cut(s) | 212 |
| MalI | GATC | 7 cut(s) | 453, 567, 586, 712, 728, 1217, 1369 |
| MbiI | CCGCTC | 1 cut(s) | 172 |
| MboI | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| MboII | GAAGA | 6 cut(s) | 179, 269, 506, 992, 1091, 1160 |
| MflI | RGATCY | 1 cut(s) | 726 |
| MhlI | GDGCHC | 4 cut(s) | 104, 264, 581, 743 |
| MlsI | TGGCCA | 1 cut(s) | 519 |
| MluCI | AATT | 7 cut(s) | 107, 319, 666, 852, 1034, 1141, 1296 |
| MluNI | TGGCCA | 1 cut(s) | 519 |
| MlyI | GAGTC | 3 cut(s) | 142, 233, 1183 |
| MmeI | TCCRAC | 2 cut(s) | 519, 1064 |
| Mox20I | TGGCCA | 1 cut(s) | 519 |
| Mph1103I | ATGCAT | 1 cut(s) | 608 |
| MroXI | GAANNNNTTC | 1 cut(s) | 53 |
| MscI | TGGCCA | 1 cut(s) | 519 |
| MseI | TTAA | 2 cut(s) | 318, 1014 |
| MslI | CAYNNNNRTG | 1 cut(s) | 465 |
| Msp20I | TGGCCA | 1 cut(s) | 519 |
| MspI | CCGG | 4 cut(s) | 161, 217, 223, 828 |
| MspR9I | CCNGG | 2 cut(s) | 162, 223 |
| Mva1269I | GAATGC | 1 cut(s) | 376 |
| MvnI | CGCG | 4 cut(s) | 90, 131, 158, 179 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 182, 242, 251, 268, 478, 598, 812, 821, 1406 |
| NciI | CCSGG | 2 cut(s) | 162, 223 |
| NcoI | CCATGG | 1 cut(s) | 1504 |
| NdeII | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| NheI | GCTAGC | 1 cut(s) | 835 |
| NlaIII | CATG | 3 cut(s) | 485, 851, 1508 |
| NlaIV | GGNNCC | 2 cut(s) | 221, 1132 |
| NsiI | ATGCAT | 1 cut(s) | 608 |
| NspI | RCATGY | 1 cut(s) | 485 |
| PceI | AGGCCT | 1 cut(s) | 1340 |
| PciSI | GCTCTTC | 2 cut(s) | 162, 252 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 78, 87, 355, 1092 |
| PctI | GAATGC | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 53 |
| PfeI | GAWTC | 4 cut(s) | 83, 335, 983, 1106 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1298 |
| PkrI | GCNGC | 6 cut(s) | 130, 178, 195, 343, 826, 841 |
| PleI | GAGTC | 3 cut(s) | 141, 233, 1182 |
| PpsI | GAGTC | 3 cut(s) | 141, 233, 1182 |
| Psp124BI | GAGCTC | 2 cut(s) | 104, 264 |
| Psp1406I | AACGTT | 1 cut(s) | 358 |
| PspN4I | GGNNCC | 2 cut(s) | 221, 1132 |
| PspPI | GGNCC | 4 cut(s) | 174, 219, 620, 1289 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1056, 1088 |
| PstI | CTGCAG | 2 cut(s) | 198, 1212 |
| PstNI | CAGNNNCTG | 2 cut(s) | 421, 515 |
| PsuI | RGATCY | 1 cut(s) | 726 |
| RsaI | GTAC | 3 cut(s) | 206, 304, 647 |
| RsaNI | GTAC | 3 cut(s) | 205, 303, 646 |
| RseI | CAYNNNNRTG | 1 cut(s) | 465 |
| SacI | GAGCTC | 2 cut(s) | 104, 264 |
| SapI | GCTCTTC | 2 cut(s) | 162, 252 |
| SaqAI | TTAA | 2 cut(s) | 318, 1014 |
| SatI | GCNGC | 6 cut(s) | 129, 177, 194, 342, 825, 840 |
| Sau3AI | GATC | 7 cut(s) | 451, 565, 584, 710, 726, 1215, 1367 |
| Sau96I | GGNCC | 4 cut(s) | 174, 219, 620, 1289 |
| SchI | GAGTC | 3 cut(s) | 142, 233, 1183 |
| ScrFI | CCNGG | 2 cut(s) | 162, 223 |
| SduI | GDGCHC | 4 cut(s) | 104, 264, 581, 743 |
| SfaNI | GCATC | 4 cut(s) | 502, 1264, 1439, 1478 |
| SfcI | CTRYAG | 3 cut(s) | 194, 1208, 1387 |
| SinI | GGWCC | 3 cut(s) | 219, 620, 1289 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 465 |
| SmlI | CTYRAG | 3 cut(s) | 569, 929, 1268 |
| SmoI | CTYRAG | 3 cut(s) | 569, 929, 1268 |
| Sse9I | AATT | 7 cut(s) | 107, 319, 666, 852, 1034, 1141, 1296 |
| SseBI | AGGCCT | 1 cut(s) | 1340 |
| SspMI | CTAG | 4 cut(s) | 795, 836, 1059, 1461 |
| SstI | GAGCTC | 2 cut(s) | 104, 264 |
| StuI | AGGCCT | 1 cut(s) | 1340 |
| StyD4I | CCNGG | 2 cut(s) | 160, 221 |
| StyI | CCWWGG | 4 cut(s) | 138, 455, 1341, 1504 |
| TaaI | ACNGT | 2 cut(s) | 302, 905 |
| TaiI | ACGT | 2 cut(s) | 361, 651 |
| TaqI | TCGA | 7 cut(s) | 33, 47, 81, 595, 713, 889, 1086 |
| TasI | AATT | 7 cut(s) | 107, 319, 666, 852, 1034, 1141, 1296 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TauI | GCSGC | 3 cut(s) | 131, 179, 344 |
| TfiI | GAWTC | 4 cut(s) | 83, 335, 983, 1106 |
| Tru1I | TTAA | 2 cut(s) | 318, 1014 |
| Tru9I | TTAA | 2 cut(s) | 318, 1014 |
| TscAI | CASTG | 2 cut(s) | 440, 1117 |
| TseI | GCWGC | 3 cut(s) | 193, 824, 839 |
| TspDTI | ATGAA | 3 cut(s) | 507, 969, 993 |
| TspRI | CASTG | 2 cut(s) | 440, 1117 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1298 |
| VpaK11BI | GGWCC | 3 cut(s) | 219, 620, 1289 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1390 |
| XapI | RAATTY | 2 cut(s) | 852, 1034 |
| XceI | RCATGY | 1 cut(s) | 485 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 531 |
| XmnI | GAANNNNTTC | 1 cut(s) | 53 |
| XspI | CTAG | 4 cut(s) | 795, 836, 1059, 1461 |
| Zsp2I | ATGCAT | 1 cut(s) | 608 |