Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010508

Physical Location & Seq

Genomic Coordinates Reverse (-)

6272136 .. 6274839

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1066300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCTGAGCTTTGTCTAGATTGTTACCACGGTGCATCAGCGACAGCGGTGGTGGTTCCTCATCACACAAGTCACGGCCAGGAATCAACCGCGGCAGTGAAGTTGCAAAAAGTGTACAGAAGTTATAGAACCAGGCGTAGGCTAGCAGATTCGGTTCTTGTTGCTGAACAGCTATGGTGGCAAGCCATAGATTATGCAAAGCTGAATCGGAGTACAGTTTCCTTCTTCGATTATCATAAATCCGAAACTGCAGCGTCACGGTGGAGTAGGATCAGTCTCATTGCATCGAAGGCGTGTTTCCTTATCTTCCTCATGGCACATAAACTTAGATTATCTAAGGATGCCAACGCACAAAAGTTAGCGTTCCAACATTGGATTGAAGCGATTGATCCAAGACACCGTTATGGCCATAATCTGAACTTCTACTATGATGAGTGGTGTAGATGTGATGCTGGGCAACCATTTTTCTACTGGTTGGACATTGGAGATGGCAAGGAAGTTGATCTCAAGGATTGCTCAAGATCAAGGCTGCAACAAGAATGCATCAAATATCTAGGACCGCAAGAGAGGGAACAATTCGAATATATCATTCATGAAGGGACATTGGTGCACGGAGGAACAGGACATCTTCTTGATACAAATCTAGGAATGCAAGATTCTAAATGGATTTTCGTCATGAGCACCTCAAGGAAACTTTATGCTGGTGTGAAGAAGGGATCATTTCATCATTCCAGCTTCCTTGCGGGAGGGGCGACCTTGGCTGCTGGAAGACTTGCAGTAGAAAATGGAAAGCTCAAGTCCGTGTCAGCATACAGCGGACATTATCGTCCAAGCAACGAAAACCTTGGCAACTTCCTCGCCTTCCTTGAGGAAAATGGAGTCACCCTTGATGAAGTCCAGGTACTTTCTCCAATGGAAGGCAACAAGAGCTACGATTTGAGCAAAATGAACCAAGCAGGAAGAACAATTGGACAAACAAAAGATGAACAGCCTGAACTTCATGCTTCCAGAGTCGAAGAACTAAATCAACAGTCTGAATCCTGTACATTTACACAAACAAAAAGAACGGTCACTTACCAAAGAACTGTAACTAGGAATCTCCGCAACCTCCAAATAATTGTGCCGACGAATGAAATATTGCAGAGGATCAAGCCCAAGAAGGAAGCAAGTTCATGCCAATTTCGGGACCAATTATGTTCAGAATGGTCAACAGGAGTAGGCCAGATAACTGGATCTGTTGCAGAAACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

418

Amino Acids

47.29

Weight (kDa)

8.56

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52870
fragaria_vesca	FvH4_6g18220
malus_domestica	MD07G1066300.v1.1 MD12G1022200.v1.1 MD14G1019000.v1.1
prunus_persica	Prupe.2G083500_v2.0.a1 Prupe.2G083500_v2.0.a1 Prupe.7G114500_v2.0.a1 Prupe.7G114500_v2.0.a1
pyrus_communis	pycom12g02060 pycom14g01880
rosa_chinensis	RchiOBHm_Chr3g0472641
rosa_laevigata	RLG00000024067
rosa_multiflora	Rmu_sc0003510.1_g000017
rosa_roxburghii	Rroxscaffold_6G00408760
rosa_rugosa	Rorug03G0126800
rosa_samantha	Rh3AG179500 Rh3BG205400 Rh3CG202500 Rh3DG170400
rosa_wichuraiana	Rw3G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	825
AccII	CGCG	1 cut(s)	92
AciI	CCGC	7 cut(s)	47, 90, 92, 560, 743, 816, 1102
AclWI	GGATC	5 cut(s)	278, 383, 724, 1154, 1240
AcoI	YGGCCR	2 cut(s)	76, 406
AfaI	GTAC	4 cut(s)	116, 214, 903, 1045
AfiI	CCNNNNNNNGG	3 cut(s)	138, 917, 1183
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	3 cut(s)	78, 131, 897
AluBI	AGCT	6 cut(s)	10, 172, 202, 735, 793, 930
AluI	AGCT	6 cut(s)	10, 172, 202, 735, 793, 930
Alw21I	GWGCWC	2 cut(s)	612, 683
Alw26I	GTCTC	1 cut(s)	281
Alw44I	GTGCAC	1 cut(s)	608
AlwI	GGATC	5 cut(s)	278, 383, 724, 1154, 1240
AoxI	GGCC	3 cut(s)	76, 406, 1219
ApaLI	GTGCAC	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	251, 529, 761
AspS9I	GGNCC	2 cut(s)	557, 1186
AsuHPI	GGTGA	1 cut(s)	874
AsuII	TTCGAA	1 cut(s)	579
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	557, 1186
BaeGI	GKGCMC	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	408
BarI	GAAGNNNNNNTAC	2 cut(s)	885, 917
BbsI	GAAGAC	1 cut(s)	775
Bbv12I	GWGCWC	2 cut(s)	612, 683
BbvI	GCAGC	3 cut(s)	263, 516, 748
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	838, 872
BciT130I	CCWGG	3 cut(s)	80, 133, 899
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	5 cut(s)	17, 143, 554, 644, 1092
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	4 cut(s)	93, 252, 530, 762
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	4 cut(s)	94, 253, 531, 763
Bme1390I	CCNGG	3 cut(s)	80, 133, 899
Bme18I	GGWCC	2 cut(s)	557, 1186
BmgT120I	GGNCC	2 cut(s)	557, 1186
BmiI	GGNNCC	2 cut(s)	57, 1187
BmrFI	CCNGG	3 cut(s)	80, 133, 899
BmsI	GCATC	5 cut(s)	44, 293, 331, 439, 552
BmtI	GCTAGC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	775
Bpu1102I	GCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	5 cut(s)	491, 502, 670, 779, 887
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	4 cut(s)	28, 90, 756, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 917, 1183
Bse1I	ACTGG	2 cut(s)	476, 1234
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	3 cut(s)	80, 133, 899
BseDI	CCNNGG	4 cut(s)	28, 90, 756, 844
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	3 cut(s)	138, 917, 1183
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	476, 1234
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	3 cut(s)	263, 516, 748
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	78, 408, 1221
BsiHKAI	GWGCWC	2 cut(s)	612, 683
BslFI	GGGAC	2 cut(s)	613, 1199
BslI	CCNNNNNNNGG	3 cut(s)	138, 917, 1183
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	613, 1199
BsmI	GAATGC	2 cut(s)	545, 654
BsnI	GGCC	3 cut(s)	78, 408, 1221
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	612, 683
Bsp1407I	TGTACA	2 cut(s)	114, 1043
Bsp143I	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	7 cut(s)	47, 90, 92, 560, 743, 816, 1102
BspANI	GGCC	3 cut(s)	78, 408, 1221
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	2 cut(s)	592, 675
BspLI	GGNNCC	2 cut(s)	57, 1187
BspMAI	CTGCAG	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	5 cut(s)	278, 383, 724, 1154, 1240
BspT104I	TTCGAA	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	279
BsrGI	TGTACA	2 cut(s)	114, 1043
BsrI	ACTGG	2 cut(s)	476, 1234
BssECI	CCNNGG	4 cut(s)	28, 90, 756, 844
BssMI	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
BssT1I	CCWWGG	2 cut(s)	756, 844
Bst2UI	CCWGG	3 cut(s)	80, 133, 899
Bst4CI	ACNGT	7 cut(s)	32, 217, 261, 401, 1032, 1069, 1087
BstAUI	TGTACA	2 cut(s)	114, 1043
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	144, 183
BstDEI	CTNAG	3 cut(s)	6, 326, 336
BstDSI	CCRYGG	2 cut(s)	28, 90
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	7 cut(s)	273, 391, 505, 524, 719, 1149, 1235
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 290, 749, 758, 927
BstNI	CCWGG	3 cut(s)	80, 133, 899
BstSCI	CCNGG	3 cut(s)	78, 131, 897
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	612
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	263, 516, 748
BstV2I	GAAGAC	1 cut(s)	775
BstX2I	RGATCY	1 cut(s)	1232
BstXI	CCANNNNNNTGG	1 cut(s)	1229
BstYI	RGATCY	1 cut(s)	1232
BsuRI	GGCC	3 cut(s)	78, 408, 1221
BtgI	CCRYGG	2 cut(s)	28, 90
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	144, 183
CciI	TCATGA	2 cut(s)	592, 675
Cfr13I	GGNCC	2 cut(s)	557, 1186
Cfr42I	CCGCGG	1 cut(s)	93
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	4 cut(s)	115, 213, 902, 1044
CviAII	CATG	5 cut(s)	313, 593, 676, 1001, 1173
CviQI	GTAC	4 cut(s)	115, 213, 902, 1044
DdeI	CTNAG	3 cut(s)	6, 326, 336
DpnI	GATC	7 cut(s)	272, 390, 504, 523, 718, 1148, 1234
DpnII	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
DrdI	GACNNNNNNGTC	1 cut(s)	825
DseDI	GACNNNNNNGTC	1 cut(s)	825
EaeI	YGGCCR	2 cut(s)	76, 406
Eco130I	CCWWGG	2 cut(s)	756, 844
Eco47I	GGWCC	2 cut(s)	557, 1186
EcoRII	CCWGG	3 cut(s)	78, 131, 897
EcoT14I	CCWWGG	2 cut(s)	756, 844
EcoT22I	ATGCAT	1 cut(s)	545
ErhI	CCWWGG	2 cut(s)	756, 844
FaeI	CATG	5 cut(s)	316, 596, 679, 1004, 1176
FaqI	GGGAC	2 cut(s)	613, 1199
FatI	CATG	5 cut(s)	312, 592, 675, 1000, 1172
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	4 cut(s)	93, 252, 530, 762
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	93, 252, 530, 762
FspBI	CTAG	5 cut(s)	17, 143, 554, 644, 1092
GluI	GCNGC	4 cut(s)	93, 252, 530, 762
GsaI	CCCAGC	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	78, 408, 1221
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	5 cut(s)	316, 596, 679, 1004, 1176
HincII	GTYRAC	1 cut(s)	1209
HindII	GTYRAC	1 cut(s)	1209
HinfI	GANTC	8 cut(s)	83, 149, 205, 656, 879, 1011, 1037, 1096
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	3 cut(s)	115, 610, 1209
Hpy188I	TCNGA	6 cut(s)	210, 244, 417, 1036, 1201, 1253
Hpy188III	TCNNGA	7 cut(s)	17, 519, 593, 632, 676, 1008, 1184
Hpy8I	GTNNAC	3 cut(s)	115, 610, 1209
Hpy99I	CGWCG	1 cut(s)	1129
HpyAV	CCTTC	7 cut(s)	232, 283, 590, 706, 871, 911, 1153
HpyCH4III	ACNGT	7 cut(s)	32, 217, 261, 401, 1032, 1069, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 290, 749, 758, 927
HpyF3I	CTNAG	3 cut(s)	6, 326, 336
Hsp92II	CATG	5 cut(s)	316, 596, 679, 1004, 1176
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
Lsp1109I	GCAGC	3 cut(s)	263, 516, 748
LweI	GCATC	5 cut(s)	44, 293, 331, 439, 552
MaeI	CTAG	5 cut(s)	17, 143, 554, 644, 1092
MaeIII	GTNAC	6 cut(s)	23, 71, 255, 880, 1069, 1087
MalI	GATC	7 cut(s)	272, 390, 504, 523, 718, 1148, 1234
MboI	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
MboII	GAAGA	7 cut(s)	217, 298, 620, 721, 780, 972, 1028
MfeI	CAATTG	1 cut(s)	966
MflI	RGATCY	1 cut(s)	1232
MhlI	GDGCHC	2 cut(s)	612, 683
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	5 cut(s)	575, 966, 1116, 1178, 1190
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	888, 1020
MmeI	TCCRAC	2 cut(s)	391, 456
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	3 cut(s)	47, 92, 816
MspR9I	CCNGG	3 cut(s)	80, 133, 899
MunI	CAATTG	1 cut(s)	966
Mva1269I	GAATGC	2 cut(s)	545, 654
MvaI	CCWGG	3 cut(s)	80, 133, 899
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	178, 290, 749, 758, 927
NdeII	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	316, 596, 679, 1004, 1176
NlaIV	GGNNCC	2 cut(s)	57, 1187
NmuCI	GTSAC	4 cut(s)	71, 255, 880, 1069
NsiI	ATGCAT	1 cut(s)	545
NspV	TTCGAA	1 cut(s)	579
PagI	TCATGA	2 cut(s)	592, 675
PctI	GAATGC	2 cut(s)	545, 654
PfeI	GAWTC	6 cut(s)	83, 149, 205, 656, 1037, 1096
PkrI	GCNGC	4 cut(s)	94, 253, 531, 763
PleI	GAGTC	2 cut(s)	887, 1019
PpsI	GAGTC	2 cut(s)	887, 1019
Psp6I	CCWGG	3 cut(s)	78, 131, 897
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	3 cut(s)	78, 131, 897
PspN4I	GGNNCC	2 cut(s)	57, 1187
PspPI	GGNCC	2 cut(s)	557, 1186
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	1232
RsaI	GTAC	4 cut(s)	116, 214, 903, 1045
RsaNI	GTAC	4 cut(s)	115, 213, 902, 1044
RseI	CAYNNNNRTG	1 cut(s)	402
SacII	CCGCGG	1 cut(s)	93
SatI	GCNGC	4 cut(s)	93, 252, 530, 762
Sau3AI	GATC	7 cut(s)	270, 388, 502, 521, 716, 1146, 1232
Sau96I	GGNCC	2 cut(s)	557, 1186
SchI	GAGTC	2 cut(s)	888, 1020
ScrFI	CCNGG	3 cut(s)	80, 133, 899
SduI	GDGCHC	2 cut(s)	612, 683
SfaNI	GCATC	5 cut(s)	44, 293, 331, 439, 552
SfcI	CTRYAG	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	557, 1186
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	5 cut(s)	506, 517, 685, 794, 866
SmoI	CTYRAG	5 cut(s)	506, 517, 685, 794, 866
Sse9I	AATT	5 cut(s)	575, 966, 1116, 1178, 1190
SsiI	CCGC	7 cut(s)	47, 90, 92, 560, 743, 816, 1102
SspI	AATATT	1 cut(s)	1137
SspMI	CTAG	5 cut(s)	17, 143, 554, 644, 1092
StyD4I	CCNGG	3 cut(s)	78, 131, 897
StyI	CCWWGG	2 cut(s)	756, 844
TaaI	ACNGT	7 cut(s)	32, 217, 261, 401, 1032, 1069, 1087
TaqI	TCGA	4 cut(s)	228, 287, 579, 1014
TasI	AATT	5 cut(s)	575, 966, 1116, 1178, 1190
TatI	WGTACW	3 cut(s)	114, 212, 1043
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	6 cut(s)	83, 149, 205, 656, 1037, 1096
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	4 cut(s)	71, 255, 880, 1069
TseI	GCWGC	3 cut(s)	251, 529, 761
Tsp45I	GTSAC	4 cut(s)	71, 255, 880, 1069
TspDTI	ATGAA	9 cut(s)	581, 609, 713, 906, 962, 989, 999, 1146, 1161
TspGWI	ACGGA	2 cut(s)	627, 790
TspRI	CASTG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	557, 1186
XbaI	TCTAGA	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XspI	CTAG	5 cut(s)	17, 143, 554, 644, 1092
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.