FvH4_6g18220

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
12026398 .. 12029848
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18220.t1

Sequence Viewer

Length: 1497 bp
ATGGAGGTTCATACTCAGAGCCTCTCGGGTTTCGCCACCCTCCAGTCAAAGCCTCCATCTCCATTCTCCTACTCCCCCAACGGCGTCCTCCACTCCCGCGACTTCCCCACCTCCGAGTTGTCCCCCAAATGCGAGGCCGTGAGTCCCAAGGCGAGTGAGGCGGACGCGCTTGGGGGAGAAGGGTCCGAGTCCAAAGCGGCCGTGAAGCTCCAGAAGGTCTACAGGAGTTACCGCACCCGGCGCAGGCTGGCTGACTCTGCCGTCGTCGCTGAAGAGCTGTGGTGGCAAGCGATAGACTATGCGAGACTGAATCACAGCACCATTTCTTTCTTTAATTTCTTGAAGCCCGAGTCTGTGGCTTCACGCTGGAAGCGTTTTAGCTTGAATGCCTCTAAGGTGGGAAAGGGGTTGTCTAAAGATGCCAAAGCACAACAACTGGCTTTTCAGCACTGGATTGAAGCTATTGATCCAAGACACAGGTATGGGCATAGCTTGCATGTGTATTATGAAGAATGGTGTAAAGCAGATGCTGGTCAGCCATTTTTTTACTGGTTGGATGTAGGAGAAGGTAAAGAGCTTGATCTCAAGAAGTGCCCAAGATCAGAGCTTCGACAACAATGCATTAGATATCTTGGACCTCACGAGAGAATACATTACGAGTATGTTGTTGCTGATGGGCAAATTATTCACTCACAAACTGGAGAGCTACTGGATACAAATGAGGGATCGAAAGCCAAGTGGATCTTTGTTATGAGCACCACTAAGAAACTCTATGCTGGTGAAAAAAAGAAAGGAGTTTTCCATCATTCTAGCTTCTTGGCTGGAGGAGTGACAATAGCTGCCGGAAGGCTAGCGGTAGAGCATGGAATTCTGAAGTCAATTTCTGCATATAGTGGACATTATCGACCCACTGATGACCGTCTTGATAGCTTCTTATCATTTCTCAAGGAAAATGGCGTGAACCTTGATGAAGTTGAGATACGCAAGGCAAATGAAGATTCAGAAAAGTATGATGGCAAGTCTAATAAAGGTGGGACTACATTTAAATTTCCAACCAACTCTGAAGCTCCTACTGAACCTGAGATACCAGAAGAAGCGGAAAACACCCAAGTCTTGGAATCCACTGATGGTCCCGAGACCAAAGCTAATTACCAAAGAACTTTATCTGGCGGTCTTCAGAGTCCAAGAGCTGAAGTACCTCAGAACAAGATACTGCAGAGGATCAACTCCAAGAAGCAAGCCAAATCATACCAACTTGGGCATCAACTATCCCTCAAGTGGTCAACGGGAGCTGGACCAAGAATTGGTTGTGTTGCTGATTATCCAGTAGAACTGAGAATGCAGGCTTTGGAGTTTGTCAATCTATCTCCAAGATCACCCCCAACACCATCCTACAGGAGGTTTGCTGGTCTCGCTTCGCCTACATCTGGCCTCACATCACCTACATCCATTTCCACCTCAGATATCAACCATGGTGATTTGACCTCTGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

55.38

Weight (kDa)

8.53

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AccB7I CCANNNNNTGG 2 cut(s) 1114, 1304
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 99, 167
AciI CCGC 7 cut(s) 97, 161, 197, 232, 854, 1097, 1170
AclWI GGATC 4 cut(s) 461, 733, 749, 1229
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 867, 1046
AcuI CTGAAG 5 cut(s) 291, 893, 1083, 1160, 1212
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 1197
AfiI CCNNNNNNNGG 6 cut(s) 243, 1114, 1278, 1304, 1398, 1427
AgsI TTSAA 3 cut(s) 343, 385, 458
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 3 cut(s) 298, 1130, 1415
AlwI GGATC 4 cut(s) 461, 733, 749, 1229
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 3 cut(s) 25, 347, 1133
AoxI GGCC 3 cut(s) 135, 198, 1429
ApeKI GCWGC 1 cut(s) 839
ApoI RAATTY 2 cut(s) 867, 1046
AspLEI GCGC 2 cut(s) 169, 243
AspS9I GGNCC 4 cut(s) 183, 635, 1130, 1295
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 4 cut(s) 791, 1368, 1431, 1487
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 3 cut(s) 25, 347, 1133
AvaII GGWCC 4 cut(s) 183, 635, 1130, 1295
BaeGI GKGCMC 1 cut(s) 596
BarI GAAGNNNNNNTAC 2 cut(s) 963, 995
BauI CACGAG 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 1 cut(s) 826
BccI CCATC 6 cut(s) 64, 668, 810, 1007, 1121, 1396
BceAI ACGGC 4 cut(s) 97, 122, 185, 245
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BciVI GTATCC 1 cut(s) 706
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 298, 1130, 1415
BfaI CTAG 2 cut(s) 810, 851
BfmI CTRYAG 3 cut(s) 220, 1214, 1393
BfuI GTATCC 1 cut(s) 706
BisI GCNGC 2 cut(s) 198, 840
BlsI GCNGC 2 cut(s) 199, 841
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 4 cut(s) 183, 635, 1130, 1295
BmeT110I CYCGRG 3 cut(s) 25, 347, 1133
BmgT120I GGNCC 4 cut(s) 183, 635, 1130, 1295
BmiI GGNNCC 2 cut(s) 184, 1132
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 409, 517, 1270
BmtI GCTAGC 1 cut(s) 854
BpiI GAAGAC 1 cut(s) 1166
BpmI CTGGAG 4 cut(s) 26, 194, 720, 843
BpuEI CTTGAG 3 cut(s) 569, 929, 1259
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 2 cut(s) 1130, 1415
BsaJI CCNNGG 2 cut(s) 147, 1471
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 1114, 1278, 1304, 1398, 1427
Bse1I ACTGG 7 cut(s) 43, 441, 455, 554, 703, 714, 1325
BseDI CCNNGG 2 cut(s) 147, 1471
BseGI GGATG 3 cut(s) 562, 1388, 1445
BseLI CCNNNNNNNGG 6 cut(s) 243, 1114, 1278, 1304, 1398, 1427
BseMII CTCAG 5 cut(s) 29, 1071, 1214, 1325, 1473
BseNI ACTGG 7 cut(s) 43, 441, 455, 554, 703, 714, 1325
BseRI GAGGAG 1 cut(s) 840
BseSI GKGCMC 1 cut(s) 596
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 826
Bsh1236I CGCG 2 cut(s) 99, 167
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 137, 200, 1431
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 758
BsiHKCI CYCGRG 3 cut(s) 25, 347, 1133
BsiSI CCGG 2 cut(s) 238, 843
BslFI GGGAC 4 cut(s) 106, 129, 1048, 1116
BslI CCNNNNNNNGG 6 cut(s) 243, 1114, 1278, 1304, 1398, 1427
BsmAI GTCTC 3 cut(s) 298, 1130, 1415
BsmFI GGGAC 4 cut(s) 106, 129, 1048, 1116
BsmI GAATGC 2 cut(s) 391, 1344
BsnI GGCC 3 cut(s) 137, 200, 1431
Bso31I GGTCTC 2 cut(s) 1130, 1415
BsoBI CYCGRG 3 cut(s) 25, 347, 1133
Bsp1286I GDGCHC 2 cut(s) 596, 758
Bsp143I GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
Bsp19I CCATGG 1 cut(s) 1471
BspACI CCGC 7 cut(s) 97, 161, 197, 232, 854, 1097, 1170
BspANI GGCC 3 cut(s) 137, 200, 1431
BspCNI CTCAG 5 cut(s) 28, 1072, 1213, 1326, 1472
BspFNI CGCG 2 cut(s) 99, 167
BspLI GGNNCC 2 cut(s) 184, 1132
BspMAI CTGCAG 1 cut(s) 1218
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 4 cut(s) 461, 733, 749, 1229
BspQI GCTCTTC 1 cut(s) 267
BspTNI GGTCTC 2 cut(s) 1130, 1415
BsrI ACTGG 7 cut(s) 43, 441, 455, 554, 703, 714, 1325
BssECI CCNNGG 2 cut(s) 147, 1471
BssMI GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 641
BssT1I CCWWGG 2 cut(s) 147, 1471
Bst2BI CACGAG 1 cut(s) 641
Bst4CI ACNGT 1 cut(s) 920
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 493
BstC8I GCNNGC 7 cut(s) 245, 249, 288, 494, 852, 1239, 1344
BstDEI CTNAG 7 cut(s) 15, 393, 762, 1080, 1200, 1334, 1459
BstDSI CCRYGG 1 cut(s) 1471
BstENI CCTNNNNNAGG 1 cut(s) 1396
BstF5I GGATG 3 cut(s) 562, 1388, 1445
BstFNI CGCG 2 cut(s) 99, 167
BstHHI GCGC 2 cut(s) 169, 243
BstKTI GATC 7 cut(s) 469, 583, 602, 728, 744, 1224, 1376
BstMAI GTCTC 3 cut(s) 298, 1130, 1415
BstMBI GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 7 cut(s) 158, 240, 257, 266, 283, 493, 1412
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 3 cut(s) 220, 1214, 1393
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 2 cut(s) 99, 167
BstV1I GCAGC 1 cut(s) 826
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
BstZI CGGCCG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 3 cut(s) 137, 200, 1431
BtgI CCRYGG 1 cut(s) 1471
BtsCI GGATG 3 cut(s) 562, 1388, 1445
BtsIMutI CAGTG 3 cut(s) 448, 909, 1122
Cac8I GCNNGC 7 cut(s) 245, 249, 288, 494, 852, 1239, 1344
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 2 cut(s) 169, 243
Cfr13I GGNCC 4 cut(s) 183, 635, 1130, 1295
CseI GACGC 2 cut(s) 73, 173
Csp6I GTAC 1 cut(s) 1196
CviAII CATG 3 cut(s) 497, 863, 1472
CviQI GTAC 1 cut(s) 1196
DdeI CTNAG 7 cut(s) 15, 393, 762, 1080, 1200, 1334, 1459
DpnI GATC 7 cut(s) 468, 582, 601, 727, 743, 1223, 1375
DpnII GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
DraI TTTAAA 1 cut(s) 1045
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 198
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 147, 1471
Eco31I GGTCTC 2 cut(s) 1130, 1415
Eco32I GATATC 2 cut(s) 629, 1465
Eco47I GGWCC 4 cut(s) 183, 635, 1130, 1295
Eco52I CGGCCG 1 cut(s) 198
Eco57I CTGAAG 5 cut(s) 291, 893, 1083, 1160, 1212
Eco88I CYCGRG 3 cut(s) 25, 347, 1133
EcoNI CCTNNNNNAGG 1 cut(s) 1396
EcoRI GAATTC 1 cut(s) 867
EcoRV GATATC 2 cut(s) 629, 1465
EcoT14I CCWWGG 2 cut(s) 147, 1471
EcoT22I ATGCAT 1 cut(s) 623
ErhI CCWWGG 2 cut(s) 147, 1471
FaeI CATG 3 cut(s) 500, 866, 1475
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FaqI GGGAC 4 cut(s) 106, 129, 1048, 1116
FatI CATG 3 cut(s) 496, 862, 1471
FauI CCCGC 1 cut(s) 104
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 198, 840
FokI GGATG 3 cut(s) 569, 1375, 1432
Fsp4HI GCNGC 2 cut(s) 198, 840
FspBI CTAG 2 cut(s) 810, 851
GlaI GCGC 2 cut(s) 168, 242
GluI GCNGC 2 cut(s) 198, 840
GsuI CTGGAG 4 cut(s) 26, 194, 720, 843
HaeIII GGCC 3 cut(s) 137, 200, 1431
HapII CCGG 2 cut(s) 238, 843
HgaI GACGC 2 cut(s) 73, 173
HhaI GCGC 2 cut(s) 169, 243
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 3 cut(s) 500, 866, 1475
Hin6I GCGC 2 cut(s) 167, 241
HinP1I GCGC 2 cut(s) 167, 241
HincII GTYRAC 1 cut(s) 1284
HindII GTYRAC 1 cut(s) 1284
HinfI GANTC 8 cut(s) 142, 188, 254, 310, 350, 998, 1118, 1180
HpaII CCGG 2 cut(s) 238, 843
HphI GGTGA 4 cut(s) 791, 1368, 1431, 1487
Hpy166II GTNNAC 4 cut(s) 220, 896, 961, 1284
Hpy188III TCNNGA 6 cut(s) 211, 340, 586, 641, 923, 1133
Hpy8I GTNNAC 4 cut(s) 220, 896, 961, 1284
Hpy99I CGWCG 2 cut(s) 266, 269
HpyAV CCTTC 4 cut(s) 173, 208, 560, 840
HpyCH4III ACNGT 1 cut(s) 920
HpyCH4V TGCA 5 cut(s) 496, 621, 887, 1216, 1342
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 240, 257, 266, 283, 493, 1412
HpyF3I CTNAG 7 cut(s) 15, 393, 762, 1080, 1200, 1334, 1459
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 3 cut(s) 500, 866, 1475
HspAI GCGC 2 cut(s) 167, 241
Kzo9I GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 213, 1072, 1289
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 3 cut(s) 409, 517, 1270
MaeI CTAG 2 cut(s) 810, 851
MaeIII GTNAC 2 cut(s) 227, 829
MalI GATC 7 cut(s) 468, 582, 601, 727, 743, 1223, 1375
MboI GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
MboII GAAGA 5 cut(s) 284, 521, 1007, 1103, 1166
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 2 cut(s) 596, 758
MluCI AATT 7 cut(s) 334, 681, 867, 879, 1046, 1147, 1302
MlyI GAGTC 5 cut(s) 151, 197, 248, 359, 1189
MmeI TCCRAC 2 cut(s) 534, 1076
Mph1103I ATGCAT 1 cut(s) 623
MseI TTAA 2 cut(s) 333, 1044
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 2 cut(s) 238, 843
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 2 cut(s) 391, 1344
MvnI CGCG 2 cut(s) 99, 167
MwoI GCNNNNNNNGC 7 cut(s) 158, 240, 257, 266, 283, 493, 1412
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 1471
NdeII GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 3 cut(s) 500, 866, 1475
NlaIV GGNNCC 2 cut(s) 184, 1132
NmuCI GTSAC 1 cut(s) 829
NsiI ATGCAT 1 cut(s) 623
NspI RCATGY 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PctI GAATGC 2 cut(s) 391, 1344
PfeI GAWTC 3 cut(s) 310, 998, 1118
PflMI CCANNNNNTGG 2 cut(s) 1114, 1304
PkrI GCNGC 2 cut(s) 199, 841
PleI GAGTC 5 cut(s) 150, 196, 248, 358, 1188
PpsI GAGTC 5 cut(s) 150, 196, 248, 358, 1188
PspN4I GGNNCC 2 cut(s) 184, 1132
PspPI GGNCC 4 cut(s) 183, 635, 1130, 1295
PsrI GAACNNNNNNTAC 2 cut(s) 1068, 1100
PstI CTGCAG 1 cut(s) 1218
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 741
RsaI GTAC 1 cut(s) 1197
RsaNI GTAC 1 cut(s) 1196
RseI CAYNNNNRTG 1 cut(s) 480
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 333, 1044
SatI GCNGC 2 cut(s) 198, 840
Sau3AI GATC 7 cut(s) 466, 580, 599, 725, 741, 1221, 1373
Sau96I GGNCC 4 cut(s) 183, 635, 1130, 1295
SchI GAGTC 5 cut(s) 151, 197, 248, 359, 1189
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 2 cut(s) 596, 758
SfaNI GCATC 3 cut(s) 409, 517, 1270
SfcI CTRYAG 3 cut(s) 220, 1214, 1393
SinI GGWCC 4 cut(s) 183, 635, 1130, 1295
SmiI ATTTAAAT 1 cut(s) 1045
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 3 cut(s) 584, 944, 1274
SmoI CTYRAG 3 cut(s) 584, 944, 1274
Sse9I AATT 7 cut(s) 334, 681, 867, 879, 1046, 1147, 1302
SsiI CCGC 7 cut(s) 97, 161, 197, 232, 854, 1097, 1170
SspMI CTAG 2 cut(s) 810, 851
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 2 cut(s) 147, 1471
SwaI ATTTAAAT 1 cut(s) 1045
TaaI ACNGT 1 cut(s) 920
TaqI TCGA 3 cut(s) 610, 728, 904
TasI AATT 7 cut(s) 334, 681, 867, 879, 1046, 1147, 1302
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 310, 998, 1118
Tru1I TTAA 2 cut(s) 333, 1044
Tru9I TTAA 2 cut(s) 333, 1044
TscAI CASTG 3 cut(s) 455, 916, 1129
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 1 cut(s) 839
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 3 cut(s) 522, 984, 1008
TspRI CASTG 3 cut(s) 455, 916, 1129
Van91I CCANNNNNTGG 2 cut(s) 1114, 1304
VpaK11BI GGWCC 4 cut(s) 183, 635, 1130, 1295
XagI CCTNNNNNAGG 1 cut(s) 1396
XapI RAATTY 2 cut(s) 867, 1046
XceI RCATGY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 810, 851
Zsp2I ATGCAT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.