Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012002

Physical Location & Seq

Genomic Coordinates Reverse (-)

19615977 .. 19618507

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGACTTGCAACTGAAACAATGGAGAAGTCAGCAGCAGAATGAGTCAGAAGAACAAGGCTCTGCTGCAACTAAGATATCAAACTTTTTCTTTGATCAGATTCAGTCCCAAACTGCTACTTCTGCTGCTGCGGCTCCTCTTCCTCTCTTTGTCCCTGAACCCACTTCTTCCTCTTCTTTCTCTTGCTTCTCTCCTGACTCTTCTAATTCTTCTTCTTCTTCCAGGTTCCTCAAGATGGGAAACTTCTTCAGCTGGGCACAGTGGCAAGAACTTGAGCTACAAGCACTGATCTATAGATACATGTTGGCTGGTGCTTCTGTTCCTCAAGAGCTTCTCTTACCTATTAAGAAAAGTCTCCTCCATCAATCTCCTATGCATTTCCTTCACCATCCTCTTCAACATAGTTTTCCTCATCACCAACCTTCTTGGTATTGGGGAAGAGGAGCAATGGATCCTGAGCCAGGGAGGTGTAAGAGAACTGACGGCAAGAAATGGAGATGTTCAAGGGATGTTGTAGCGGGCCACAAGTATTGTGACCGCCACATTCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCACCATCACAACGACAGCCACAACAACCGCATCTTCTTTTGTCTTAGGTGAGGAGCTTGGTCATGGACCAAACAACAACCACTTCTTCTCCTCTGGTTCATCTCAACCTCTCCACCTTAGTCATCAACAAAGTTGTTCTTCAGAGATGAAACAAGAAAGCAACAACAACAAGAGGCCATATGAAGCTAACAGTGGATTCAGCAATGGAAGATCAGACGATGGTCACATCTTGAGGCATTTCTTTGACGATTGGCCACGATCATCAGACTCTACCTCCAGTCCAATGAGCTCATCCACTTGTCATCTTTCAATCTCCATGCCCGGTAACAACACGTCCTCAGATGTTTCTCTAAAACTTTCCACAGGCAATGAAGAAGAAGAAGAGAACATGAGAAATAACAACAATGAGAGGGAGCAAATGAATTGGTGGAGCAATGGAGGGAATCACCACAACAATATGGGAGGACCATTAGCTGAGGCTTTGAGGTCAGCTTCTTCGACGTCAAGTGTTCTTCATCAGATGGGAATCTCTACTCAAGTTTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009624 GO:0022622 GO:0032501 GO:0032502 GO:0042127 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0061062 GO:0065007 GO:0097159 GO:0099402 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

380

Amino Acids

42.53

Weight (kDa)

6.87

Isoelectric Point (pI)

68.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	83 - 115	3.2e-13	QLQ
WRC	PF08879	152 - 194	5.9e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36400 AT3G52910
fragaria_vesca	FvH4_6g18130
malus_domestica	MD12G1020500.v1.1 MD14G1017600.v1.1
prunus_persica	Prupe.7G115500_v2.0.a1 Prupe.7G115500_v2.0.a1
pyrus_communis	pycom14g01600
rosa_chinensis	RchiOBHm_Chr3g0472411
rosa_laevigata	RLG00000024082
rosa_multiflora	Rmu_sc0001096.1_g000014
rosa_roxburghii	Rroxscaffold_6G00408940
rosa_rugosa	Rorug03G0124600
rosa_samantha	Rh3AG177000 Rh3BG203000 Rh3CG193300 Rh3CG200500 Rh3DG172100
rosa_wichuraiana	Rw3G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1097
AciI	CCGC	5 cut(s)	131, 518, 538, 585, 621
AclWI	GGATC	2 cut(s)	446, 459
AcoI	YGGCCR	1 cut(s)	845
AcuI	CTGAAG	2 cut(s)	232, 717
AcyI	GRCGYC	1 cut(s)	1094
AfiI	CCNNNNNNNGG	2 cut(s)	235, 461
AflIII	ACRYGT	2 cut(s)	300, 924
AgsI	TTSAA	4 cut(s)	398, 504, 567, 903
AjiI	CACGTC	1 cut(s)	927
AjnI	CCWGG	2 cut(s)	221, 460
AluBI	AGCT	8 cut(s)	252, 277, 331, 649, 779, 882, 1067, 1085
AluI	AGCT	8 cut(s)	252, 277, 331, 649, 779, 882, 1067, 1085
Alw21I	GWGCWC	1 cut(s)	884
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	446, 459
AoxI	GGCC	3 cut(s)	520, 767, 845
ApeKI	GCWGC	4 cut(s)	34, 65, 125, 128
Asp700I	GAANNNNTTC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	520, 659, 1058
AsuC2I	CCSGG	1 cut(s)	915
AsuHPI	GGTGA	5 cut(s)	377, 407, 539, 653, 1031
AvaII	GGWCC	2 cut(s)	659, 1058
BaeGI	GKGCMC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	847
BamHI	GGATCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	884
BbvCI	CCTCAGC	1 cut(s)	1068
BbvI	GCAGC	4 cut(s)	46, 52, 112, 115
BccI	CCATC	6 cut(s)	229, 369, 396, 605, 806, 1108
BceAI	ACGGC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	223, 462
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	5 cut(s)	35, 66, 126, 129, 132
BlsI	GCNGC	5 cut(s)	36, 67, 127, 130, 133
Bme1390I	CCNGG	3 cut(s)	223, 462, 915
Bme18I	GGWCC	2 cut(s)	659, 1058
BmgBI	CACGTC	1 cut(s)	927
BmgT120I	GGNCC	3 cut(s)	520, 659, 1058
BmiI	GGNNCC	3 cut(s)	135, 227, 453
BmrFI	CCNGG	3 cut(s)	223, 462, 915
BmsI	GCATC	1 cut(s)	632
BoxI	GACNNNNGTC	1 cut(s)	813
BpmI	CTGGAG	1 cut(s)	853
Bpu10I	CCTNAGC	2 cut(s)	456, 1068
BpuEI	CTTGAG	5 cut(s)	215, 293, 309, 844, 1113
BpuMI	CCSGG	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	1118
BsaHI	GRCGYC	1 cut(s)	1094
BsaJI	CCNNGG	2 cut(s)	461, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	665, 695, 851, 881
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 461
Bse1I	ACTGG	1 cut(s)	870
Bse3DI	GCAATG	4 cut(s)	453, 802, 967, 1033
Bse8I	GATNNNNATC	1 cut(s)	1118
BseBI	CCWGG	2 cut(s)	223, 462
BseDI	CCNNGG	2 cut(s)	461, 550
BseGI	GGATG	3 cut(s)	388, 514, 884
BseJI	GATNNNNATC	1 cut(s)	1118
BseLI	CCNNNNNNNGG	2 cut(s)	235, 461
BseMI	GCAATG	4 cut(s)	453, 802, 967, 1033
BseMII	CTCAG	3 cut(s)	447, 945, 1059
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	5 cut(s)	126, 347, 456, 659, 673
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	4 cut(s)	46, 52, 112, 115
BseYI	CCCAGC	1 cut(s)	252
BshFI	GGCC	3 cut(s)	522, 769, 847
BsiHKAI	GWGCWC	1 cut(s)	884
BsiSI	CCGG	1 cut(s)	915
BslFI	GGGAC	2 cut(s)	91, 137
BslI	CCNNNNNNNGG	2 cut(s)	235, 461
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	91, 137
BsnI	GGCC	3 cut(s)	522, 769, 847
Bsp1286I	GDGCHC	2 cut(s)	259, 884
Bsp143I	GATC	5 cut(s)	94, 288, 451, 803, 851
BspACI	CCGC	5 cut(s)	131, 518, 538, 585, 621
BspANI	GGCC	3 cut(s)	522, 769, 847
BspCNI	CTCAG	3 cut(s)	448, 944, 1060
BspLI	GGNNCC	3 cut(s)	135, 227, 453
BspPI	GGATC	2 cut(s)	446, 459
BsrDI	GCAATG	4 cut(s)	453, 802, 967, 1033
BsrI	ACTGG	1 cut(s)	870
BssECI	CCNNGG	2 cut(s)	461, 550
BssMI	GATC	5 cut(s)	94, 288, 451, 803, 851
BssNI	GRCGYC	1 cut(s)	1094
Bst2UI	CCWGG	2 cut(s)	223, 462
Bst4CI	ACNGT	4 cut(s)	261, 551, 563, 785
Bst6I	CTCTTC	6 cut(s)	144, 178, 205, 399, 433, 969
BstACI	GRCGYC	1 cut(s)	1094
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	6 cut(s)	72, 456, 637, 710, 931, 1068
BstDSI	CCRYGG	1 cut(s)	550
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	388, 514, 884
BstKTI	GATC	5 cut(s)	97, 291, 454, 806, 854
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	94, 288, 451, 803, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstNI	CCWGG	2 cut(s)	223, 462
BstNSI	RCATGY	1 cut(s)	304
BstPAI	GACNNNNGTC	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	221, 460, 913
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	4 cut(s)	46, 52, 112, 115
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	522, 769, 847
BtgI	CCRYGG	1 cut(s)	550
BtrI	CACGTC	1 cut(s)	927
BtsCI	GGATG	3 cut(s)	388, 514, 884
BtsIMutI	CAGTG	3 cut(s)	266, 284, 790
Cac8I	GCNNGC	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	520, 659, 1058
CspCI	CAANNNNNGTGG	2 cut(s)	512, 547
CviAII	CATG	4 cut(s)	301, 656, 910, 982
DdeI	CTNAG	6 cut(s)	72, 456, 637, 710, 931, 1068
DpnI	GATC	5 cut(s)	96, 290, 453, 805, 853
DpnII	GATC	5 cut(s)	94, 288, 451, 803, 851
EaeI	YGGCCR	1 cut(s)	845
Eam1104I	CTCTTC	6 cut(s)	144, 178, 205, 399, 433, 969
EarI	CTCTTC	6 cut(s)	144, 178, 205, 399, 433, 969
Ecl136II	GAGCTC	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	884
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	659, 1058
Eco53kI	GAGCTC	1 cut(s)	882
Eco57I	CTGAAG	2 cut(s)	232, 717
EcoICRI	GAGCTC	1 cut(s)	882
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	221, 460
EcoRV	GATATC	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	884
FaeI	CATG	4 cut(s)	304, 659, 913, 985
FalI	AAGNNNNNCTT	2 cut(s)	715, 747
FaqI	GGGAC	2 cut(s)	91, 137
FatI	CATG	4 cut(s)	300, 655, 909, 981
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	35, 66, 126, 129, 132
FokI	GGATG	3 cut(s)	375, 521, 871
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	5 cut(s)	35, 66, 126, 129, 132
GluI	GCNGC	5 cut(s)	35, 66, 126, 129, 132
GsaI	CCCAGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	853
HaeIII	GGCC	3 cut(s)	522, 769, 847
HapII	CCGG	1 cut(s)	915
Hin1I	GRCGYC	1 cut(s)	1094
Hin1II	CATG	4 cut(s)	304, 659, 913, 985
HinfI	GANTC	7 cut(s)	44, 100, 197, 789, 860, 1036, 1119
HpaII	CCGG	1 cut(s)	915
HphI	GGTGA	5 cut(s)	377, 407, 539, 653, 1031
Hpy188I	TCNGA	7 cut(s)	49, 99, 736, 808, 859, 934, 1113
Hpy188III	TCNNGA	6 cut(s)	194, 232, 326, 455, 567, 823
Hpy99I	CGWCG	1 cut(s)	1096
HpyAV	CCTTC	2 cut(s)	392, 432
HpyCH4III	ACNGT	4 cut(s)	261, 551, 563, 785
HpyCH4IV	ACGT	2 cut(s)	926, 1094
HpyCH4V	TGCA	3 cut(s)	10, 68, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpyF3I	CTNAG	6 cut(s)	72, 456, 637, 710, 931, 1068
HpySE526I	ACGT	2 cut(s)	926, 1094
Hsp92I	GRCGYC	1 cut(s)	1094
Hsp92II	CATG	4 cut(s)	304, 659, 913, 985
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	94, 288, 451, 803, 851
LmnI	GCTCC	5 cut(s)	139, 443, 646, 1006, 1023
Lsp1109I	GCAGC	4 cut(s)	46, 52, 112, 115
LweI	GCATC	1 cut(s)	632
MaeII	ACGT	2 cut(s)	926, 1094
MaeIII	GTNAC	3 cut(s)	533, 815, 917
MalI	GATC	5 cut(s)	96, 290, 453, 805, 853
MboI	GATC	5 cut(s)	94, 288, 451, 803, 851
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	259, 884
MlsI	TGGCCA	1 cut(s)	847
MluCI	AATT	2 cut(s)	205, 1015
MluNI	TGGCCA	1 cut(s)	847
MlyI	GAGTC	3 cut(s)	53, 191, 854
Mox20I	TGGCCA	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	562
MscI	TGGCCA	1 cut(s)	847
MseI	TTAA	2 cut(s)	345, 1141
Msp20I	TGGCCA	1 cut(s)	847
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	915
MspR9I	CCNGG	3 cut(s)	223, 462, 915
MvaI	CCWGG	2 cut(s)	223, 462
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NciI	CCSGG	1 cut(s)	915
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	5 cut(s)	94, 288, 451, 803, 851
NlaIII	CATG	4 cut(s)	304, 659, 913, 985
NlaIV	GGNNCC	3 cut(s)	135, 227, 453
NmuCI	GTSAC	2 cut(s)	533, 815
NsiI	ATGCAT	1 cut(s)	378
NspI	RCATGY	1 cut(s)	304
PciI	ACATGT	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	4 cut(s)	100, 789, 1036, 1119
PkrI	GCNGC	5 cut(s)	36, 67, 127, 130, 133
PleI	GAGTC	3 cut(s)	52, 191, 854
PpsI	GAGTC	3 cut(s)	52, 191, 854
PscI	ACATGT	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	884
Psp6I	CCWGG	2 cut(s)	221, 460
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	2 cut(s)	221, 460
PspN4I	GGNNCC	3 cut(s)	135, 227, 453
PspPI	GGNCC	3 cut(s)	520, 659, 1058
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	884
SaqAI	TTAA	2 cut(s)	345, 1141
SatI	GCNGC	5 cut(s)	35, 66, 126, 129, 132
Sau3AI	GATC	5 cut(s)	94, 288, 451, 803, 851
Sau96I	GGNCC	3 cut(s)	520, 659, 1058
SchI	GAGTC	3 cut(s)	53, 191, 854
ScrFI	CCNGG	3 cut(s)	223, 462, 915
SduI	GDGCHC	2 cut(s)	259, 884
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	2 cut(s)	659, 1058
SmlI	CTYRAG	5 cut(s)	230, 272, 324, 823, 1128
SmoI	CTYRAG	5 cut(s)	230, 272, 324, 823, 1128
Sse9I	AATT	2 cut(s)	205, 1015
SsiI	CCGC	5 cut(s)	131, 518, 538, 585, 621
SstI	GAGCTC	1 cut(s)	884
StyD4I	CCNGG	3 cut(s)	221, 460, 913
TaaI	ACNGT	4 cut(s)	261, 551, 563, 785
TaiI	ACGT	2 cut(s)	929, 1097
TaqI	TCGA	1 cut(s)	1091
TasI	AATT	2 cut(s)	205, 1015
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	100, 789, 1036, 1119
Tru1I	TTAA	2 cut(s)	345, 1141
Tru9I	TTAA	2 cut(s)	345, 1141
TscAI	CASTG	3 cut(s)	266, 291, 790
TseFI	GTSAC	2 cut(s)	533, 815
TseI	GCWGC	4 cut(s)	34, 65, 125, 128
Tsp45I	GTSAC	2 cut(s)	533, 815
TspDTI	ATGAA	7 cut(s)	681, 755, 789, 978, 1028, 1097, 1127
TspRI	CASTG	3 cut(s)	266, 291, 790
VpaK11BI	GGWCC	2 cut(s)	659, 1058
XagI	CCTNNNNNAGG	1 cut(s)	459
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	562
ZraI	GACGTC	1 cut(s)	1095
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.