pycom14g01600

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012002
Physical Location & Seq
Forward (+)
1191231 .. 1193776
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g01600.3

Sequence Viewer

Length: 1185 bp
ATGGACTTCCACCTTAAGCAATGGAAAACCCAGCAGCAGGAGCAGTCAGAGGAACAACATTCTGCAAAGATACCAAAACTTGACCTAGATCCCCATCAAAACTCAGAGCATCCATCTGCTGGGTATGCTCTCCCTCTGTTTGTATCTGAACCCAACACCAAAATCCTGTCAGCATTTTCTGATTCCTCACCTGCCACCTCCAGATTTCCCAAAATGGGAAGCTATTTCAGCTTGTCACAGTGGCAGGAGCTGGAGCTGCAGGCTTTGATATTCAGGTACATGGCGGCCGGTGCGGCTGTTCCTTCTGAGCTTCTTCAGCCAATCAGGAAAAGCCTTCTCCGTTCTGCTCCTTATTTCCTCCACCACCCTCTCCAACAGTTCCCTCACTTTCAACCTGCTTTGTTGCAATCAGGGTATTGGGGAAGAGCTGCCATGGATCCGGAACCGACAAGGTGCAGGAGGACAGATGGTAAGAAATGGCGGTGCTCGAGAGATGTGGTGGCGGGTCAGAAGTACTGTGAGCGCCATGTGCACCGTGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTCACCACCACAACCACCACGACGACCAACGGTTGTGGCGGAGGGAGTGGCAGTAATCTTAATATTGCTACCACCACCACCACCAATACATCAGCTAGTGGGGCTCATTTCGCTCTCTCTGGATCCTCATTATCCCCTTCAGTTGATCTGCGTCATCTCAACCAAAGTTCTTCAGAATCCAGACCTGAGAACAGGATCCTCTTAGAGTCCCTCGGTGAGTTCTCTGCGAGTGCGAAATCCGACAGCCATGTATTGAGGCCTTTTTTTGATGACTGGCCGGGGAAGCTCCAAGAACTCGACAATGCAGGAAGCAGACCTAGCTCAATGAACTCGGCCACCAGCCTCTCCATTTCGATACGTGGAAATACCTCATCGGATGTGTCGTTGAAATTGTCTACTGGCAATGGGGTCGAGCCAGGCCACCAGGACAGCCATGCCGAGCGTGGGCAGCCACAGTTGAATTGGCCCGCTGGGTGGGCAACAAACCAAATGGCGTCCATGGGAGGACCACTTGCAGAGGCCCTGCGGTCCTCTTCCAACTCCAATTCCTCACCAACCAGCGTCTTACATCGGTTGCCCCGTAGCTCTGCCTCCGAAACTAGCTTCATCAGCACTTGA

Protein Analysis

395

Amino Acids

43.06

Weight (kDa)

9.03

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36400 AT3G52910
fragaria_vesca FvH4_6g18130
malus_domestica MD12G1020500.v1.1 MD14G1017600.v1.1
prunus_persica Prupe.7G115500_v2.0.a1 Prupe.7G115500_v2.0.a1
pyrus_communis pycom14g01600
rosa_chinensis RchiOBHm_Chr3g0472411
rosa_laevigata RLG00000024082
rosa_multiflora Rmu_sc0001096.1_g000014
rosa_roxburghii Rroxscaffold_6G00408940
rosa_rugosa Rorug03G0124600
rosa_samantha Rh3AG177000 Rh3BG203000 Rh3CG193300 Rh3CG200500 Rh3DG172100
rosa_wichuraiana Rw3G016450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 2 cut(s) 199, 403
AccB7I CCANNNNNTGG 1 cut(s) 119
AccI GTMKAC 1 cut(s) 962
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 7 cut(s) 284, 293, 481, 503, 606, 1035, 1093
AclWI GGATC 7 cut(s) 83, 431, 444, 684, 697, 757, 770
AcoI YGGCCR 3 cut(s) 285, 842, 900
AcuI CTGAAG 3 cut(s) 299, 690, 723
AcyI GRCGYC 1 cut(s) 1061
AfaI GTAC 2 cut(s) 278, 515
AfiI CCNNNNNNNGG 5 cut(s) 37, 119, 215, 1011, 1041
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 4 cut(s) 392, 552, 955, 1027
AjnI CCWGG 2 cut(s) 982, 990
Alw21I GWGCWC 2 cut(s) 488, 534
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 7 cut(s) 83, 431, 444, 684, 697, 757, 770
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 487
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 7 cut(s) 285, 824, 842, 900, 985, 1031, 1086
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 4 cut(s) 34, 256, 428, 1015
Asp700I GAANNNNTTC 1 cut(s) 547
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 4 cut(s) 1032, 1073, 1087, 1095
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 4 cut(s) 180, 562, 794, 1110
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 2 cut(s) 1073, 1095
BaeGI GKGCMC 1 cut(s) 534
BamHI GGATCC 3 cut(s) 436, 689, 762
BanII GRGCYC 1 cut(s) 673
Bbv12I GWGCWC 2 cut(s) 488, 534
BbvI GCAGC 4 cut(s) 46, 243, 415, 1027
BccI CCATC 3 cut(s) 102, 121, 461
BcgI CGANNNNNNTGC 2 cut(s) 958, 992
BciT130I CCWGG 2 cut(s) 984, 992
BcnI CCSGG 1 cut(s) 846
BfaI CTAG 4 cut(s) 86, 663, 885, 1167
BfmI CTRYAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 526
BfrI CTTAAG 1 cut(s) 14
BfuAI ACCTGC 2 cut(s) 199, 403
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 6 cut(s) 35, 257, 285, 294, 429, 1016
BlsI GCNGC 6 cut(s) 36, 258, 286, 295, 430, 1017
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 3 cut(s) 846, 984, 992
Bme18I GGWCC 2 cut(s) 1073, 1095
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 4 cut(s) 1032, 1073, 1087, 1095
BmiI GGNNCC 4 cut(s) 438, 444, 691, 764
BmrFI CCNGG 3 cut(s) 846, 984, 992
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 2 cut(s) 184, 272
BpuMI CCSGG 1 cut(s) 846
BsaAI YACGTR 1 cut(s) 926
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 1061
BsaJI CCNNGG 5 cut(s) 432, 535, 778, 845, 1065
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 119, 215, 1011, 1041
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 845, 970
Bse3DI GCAATG 2 cut(s) 26, 976
Bse8I GATNNNNATC 1 cut(s) 93
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 2 cut(s) 984, 992
BseDI CCNNGG 5 cut(s) 432, 535, 778, 845, 1065
BseGI GGATG 2 cut(s) 109, 949
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 5 cut(s) 37, 119, 215, 1011, 1041
BseMI GCAATG 2 cut(s) 26, 976
BseMII CTCAG 3 cut(s) 117, 297, 744
BseNI ACTGG 2 cut(s) 845, 970
BseSI GKGCMC 1 cut(s) 534
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 4 cut(s) 46, 243, 415, 1027
BseYI CCCAGC 3 cut(s) 30, 119, 1037
BsgI GTGCAG 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 7 cut(s) 287, 826, 844, 902, 987, 1033, 1088
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 488, 534
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 3 cut(s) 288, 440, 845
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 5 cut(s) 37, 119, 215, 1011, 1041
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 7 cut(s) 287, 826, 844, 902, 987, 1033, 1088
BsoBI CYCGRG 1 cut(s) 487
Bsp1286I GDGCHC 3 cut(s) 488, 534, 673
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 5 cut(s) 88, 436, 689, 712, 762
Bsp19I CCATGG 2 cut(s) 432, 1065
BspACI CCGC 7 cut(s) 284, 293, 481, 503, 606, 1035, 1093
BspANI GGCC 7 cut(s) 287, 826, 844, 902, 987, 1033, 1088
BspCNI CTCAG 3 cut(s) 116, 298, 745
BspEI TCCGGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 438, 444, 691, 764
BspMAI CTGCAG 1 cut(s) 261
BspMI ACCTGC 2 cut(s) 199, 403
BspPI GGATC 7 cut(s) 83, 431, 444, 684, 697, 757, 770
BspQI GCTCTTC 1 cut(s) 418
BspTI CTTAAG 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 26, 976
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 845, 970
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 432, 535, 778, 845, 1065
BssMI GATC 5 cut(s) 88, 436, 689, 712, 762
BssNI GRCGYC 1 cut(s) 1061
BssT1I CCWWGG 2 cut(s) 432, 1065
Bst2UI CCWGG 2 cut(s) 984, 992
Bst4CI ACNGT 7 cut(s) 240, 378, 518, 536, 548, 599, 1023
Bst6I CTCTTC 2 cut(s) 418, 1105
BstACI GRCGYC 1 cut(s) 1061
BstAFI CTTAAG 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 2 cut(s) 261, 1035
BstDEI CTNAG 4 cut(s) 103, 306, 753, 769
BstDSI CCRYGG 3 cut(s) 432, 535, 1065
BstF5I GGATG 2 cut(s) 109, 949
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 5 cut(s) 91, 439, 692, 715, 765
BstMBI GATC 5 cut(s) 88, 436, 689, 712, 762
BstMCI CGRYCG 1 cut(s) 288
BstNI CCWGG 2 cut(s) 984, 992
BstSCI CCNGG 3 cut(s) 844, 982, 990
BstSFI CTRYAG 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 46, 243, 415, 1027
BstX2I RGATCY 4 cut(s) 88, 436, 689, 762
BstYI RGATCY 4 cut(s) 88, 436, 689, 762
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 7 cut(s) 287, 826, 844, 902, 987, 1033, 1088
BtgI CCRYGG 3 cut(s) 432, 535, 1065
BtsCI GGATG 2 cut(s) 109, 949
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 2 cut(s) 199, 403
Cac8I GCNNGC 2 cut(s) 261, 1035
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 4 cut(s) 1032, 1073, 1087, 1095
CseI GACGC 3 cut(s) 707, 1050, 1117
Csp6I GTAC 2 cut(s) 277, 514
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 6 cut(s) 280, 433, 527, 815, 1001, 1066
CviQI GTAC 2 cut(s) 277, 514
DdeI CTNAG 4 cut(s) 103, 306, 753, 769
DpnI GATC 5 cut(s) 90, 438, 691, 714, 764
DpnII GATC 5 cut(s) 88, 436, 689, 712, 762
EaeI YGGCCR 3 cut(s) 285, 842, 900
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 418, 1105
EarI CTCTTC 2 cut(s) 418, 1105
EciI GGCGGA 1 cut(s) 621
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 432, 1065
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 1073, 1095
Eco52I CGGCCG 1 cut(s) 285
Eco57I CTGAAG 3 cut(s) 299, 690, 723
Eco88I CYCGRG 1 cut(s) 487
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRII CCWGG 2 cut(s) 982, 990
EcoT14I CCWWGG 2 cut(s) 432, 1065
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 2 cut(s) 432, 1065
FaeI CATG 6 cut(s) 283, 436, 530, 818, 1004, 1069
FaiI YATR 7 cut(s) 126, 281, 434, 528, 816, 1002, 1067
FaqI GGGAC 1 cut(s) 760
FatI CATG 6 cut(s) 279, 432, 526, 814, 1000, 1065
FauI CCCGC 2 cut(s) 496, 1042
FblI GTMKAC 1 cut(s) 962
Fnu4HI GCNGC 6 cut(s) 35, 257, 285, 294, 429, 1016
FokI GGATG 2 cut(s) 96, 956
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 6 cut(s) 35, 257, 285, 294, 429, 1016
FspBI CTAG 4 cut(s) 86, 663, 885, 1167
GlaI GCGC 1 cut(s) 524
GluI GCNGC 6 cut(s) 35, 257, 285, 294, 429, 1016
GsaI CCCAGC 3 cut(s) 34, 123, 1041
GsuI CTGGAG 2 cut(s) 184, 272
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 7 cut(s) 287, 826, 844, 902, 987, 1033, 1088
HapII CCGG 3 cut(s) 288, 440, 845
HgaI GACGC 3 cut(s) 707, 1050, 1117
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 1061
Hin1II CATG 6 cut(s) 283, 436, 530, 818, 1004, 1069
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 3 cut(s) 182, 743, 773
HpaII CCGG 3 cut(s) 288, 440, 845
HphI GGTGA 4 cut(s) 180, 562, 794, 1110
Hpy166II GTNNAC 2 cut(s) 532, 963
Hpy188III TCNNGA 7 cut(s) 201, 325, 440, 489, 552, 687, 747
Hpy8I GTNNAC 2 cut(s) 532, 963
Hpy99I CGWCG 1 cut(s) 592
HpyAV CCTTC 3 cut(s) 312, 344, 714
HpyCH4III ACNGT 7 cut(s) 240, 378, 518, 536, 548, 599, 1023
HpyCH4IV ACGT 1 cut(s) 925
HpyCH4V TGCA 7 cut(s) 65, 259, 406, 456, 532, 872, 1082
HpyF3I CTNAG 4 cut(s) 103, 306, 753, 769
HpySE526I ACGT 1 cut(s) 925
Hsp92I GRCGYC 1 cut(s) 1061
Hsp92II CATG 6 cut(s) 283, 436, 530, 818, 1004, 1069
HspAI GCGC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 5 cut(s) 88, 436, 689, 712, 762
LguI GCTCTTC 1 cut(s) 418
LmnI GCTCC 5 cut(s) 40, 247, 253, 352, 858
Lsp1109I GCAGC 4 cut(s) 46, 243, 415, 1027
LweI GCATC 1 cut(s) 118
MaeI CTAG 4 cut(s) 86, 663, 885, 1167
MaeII ACGT 1 cut(s) 925
MaeIII GTNAC 2 cut(s) 234, 568
MalI GATC 5 cut(s) 90, 438, 691, 714, 764
MboI GATC 5 cut(s) 88, 436, 689, 712, 762
MboII GAAGA 4 cut(s) 305, 435, 729, 1092
MflI RGATCY 4 cut(s) 88, 436, 689, 762
MhlI GDGCHC 3 cut(s) 488, 534, 673
MluCI AATT 3 cut(s) 956, 1027, 1111
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 3 cut(s) 397, 831, 1128
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 547
MseI TTAA 2 cut(s) 15, 627
MspA1I CMGCKG 1 cut(s) 1037
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 3 cut(s) 288, 440, 845
MspR9I CCNGG 3 cut(s) 846, 984, 992
MvaI CCWGG 2 cut(s) 984, 992
NciI CCSGG 1 cut(s) 846
NcoI CCATGG 2 cut(s) 432, 1065
NdeII GATC 5 cut(s) 88, 436, 689, 712, 762
NlaIII CATG 6 cut(s) 283, 436, 530, 818, 1004, 1069
NlaIV GGNNCC 4 cut(s) 438, 444, 691, 764
NmeAIII GCCGAG 2 cut(s) 878, 1030
NmuCI GTSAC 2 cut(s) 234, 568
PaeR7I CTCGAG 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 199
PceI AGGCCT 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 947, 1144
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 2 cut(s) 182, 743
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 6 cut(s) 36, 258, 286, 295, 430, 1017
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
Ppu21I YACGTR 1 cut(s) 926
Psp6I CCWGG 2 cut(s) 982, 990
PspFI CCCAGC 3 cut(s) 30, 119, 1037
PspGI CCWGG 2 cut(s) 982, 990
PspN4I GGNNCC 4 cut(s) 438, 444, 691, 764
PspPI GGNCC 4 cut(s) 1032, 1073, 1087, 1095
PstI CTGCAG 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 4 cut(s) 88, 436, 689, 762
RsaI GTAC 2 cut(s) 278, 515
RsaNI GTAC 2 cut(s) 277, 514
SapI GCTCTTC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 15, 627
SatI GCNGC 6 cut(s) 35, 257, 285, 294, 429, 1016
Sau3AI GATC 5 cut(s) 88, 436, 689, 712, 762
Sau96I GGNCC 4 cut(s) 1032, 1073, 1087, 1095
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 3 cut(s) 846, 984, 992
SduI GDGCHC 3 cut(s) 488, 534, 673
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 257
Sfr274I CTCGAG 1 cut(s) 487
SinI GGWCC 2 cut(s) 1073, 1095
SlaI CTCGAG 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 14, 487
SmoI CTYRAG 2 cut(s) 14, 487
Sse9I AATT 3 cut(s) 956, 1027, 1111
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 7 cut(s) 284, 293, 481, 503, 606, 1035, 1093
SspI AATATT 1 cut(s) 631
SspMI CTAG 4 cut(s) 86, 663, 885, 1167
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 3 cut(s) 844, 982, 990
StyI CCWWGG 2 cut(s) 432, 1065
TaaI ACNGT 7 cut(s) 240, 378, 518, 536, 548, 599, 1023
TaiI ACGT 1 cut(s) 928
TaqI TCGA 4 cut(s) 488, 864, 920, 978
TasI AATT 3 cut(s) 956, 1027, 1111
TatI WGTACW 1 cut(s) 513
TauI GCSGC 2 cut(s) 287, 296
TfiI GAWTC 2 cut(s) 182, 743
Tru1I TTAA 2 cut(s) 15, 627
Tru9I TTAA 2 cut(s) 15, 627
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 2 cut(s) 234, 568
TseI GCWGC 4 cut(s) 34, 256, 428, 1015
Tsp45I GTSAC 2 cut(s) 234, 568
TspDTI ATGAA 2 cut(s) 908, 1162
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 14
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 1073, 1095
XcmI CCANNNNNNNNNTGG 3 cut(s) 533, 1007, 1026
XhoI CTCGAG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 962
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 4 cut(s) 86, 663, 885, 1167
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.