RLG00000024082

Growth-regulating factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
31570650 .. 31572487
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024082

Sequence Viewer

Length: 1194 bp
ATGGACTTTCATCTCAAGCAATGGAGAAACCAACAGCATGAGTCAGAGGAACAACAGCCCTATTCTTCTGCTACAAAGATACCAAAACTTGAGCACCTTCAGACCCAAACACACCCTGAACCAGCTTCTGGGTATGCTCTCCCTTTGTTTGTACCTGAACCAAACACCAAAGTCATCAGCACCCTGTCAGCATTTTCTGAATCTACTACTCCTACACCAGCTTCTTCTGCCACCAGATTTCCCAGGATGGGGAGCTTCTTCAGCATGAGTCAGTGGCAAGAGCTTGAGCTGCAGGCTTTGATATTTAGGTACATGCTGGCTGGTGCTGCTGTTCCTCCTGAACTTCTTCAGCCAATCAAGAGAAGCCTTCTGCATTCTCAATTCTTCTTCCACCACCCTCTTCAACAGTACCCCACTTTGTTGCAATCTGGGTACTGGGGAAGAGGGGCCATGGATCCAGAGCCGACCAGGTGCCGGAGGACAGATGGCAAGAAATGGCGGTGCTCTCGAGACGTAGTGACCGGTCAGAAGTACTGCGAGCGCCACGTGCACCGCGGACGAAACCGTTCAAGAAAGCCTGTGGAAGTCACCGCCACCGCCACCACAACCACAACCGCCGCCGGAGGAGGAGGAGTAAGGACTACCACCAACGCAGCCGTTACTGTTGCCTCATCGTTGGGAAATGGGTCGGATGGGACCCATTTTGCTCTTTCCGGGTCGTCCCCTTCCATCGATCTGCTCCAGCTCAAACAAAGCTCTTTGGAGTCCAAACATGAGAACAAGAGCTTCTTTGATAACCGCAGGGAGGTTTCGGGAGGTATTCAATCCGACAATCATATCTTGCGGCCTTTTTTCGATGACTGGCCGGGACAGCTCCAAGAACCGGACAATGGGAGAGGCAATGCTAGCTCAATGAACTCTGCCACCTCCCTCTCCATTTCGATACGTGGAAACACATCATCAGACGTGTCGTTGAAGTTGTCTACCGGCAATGGAGTAGAACCAGGCCAAGAGAGTGAGCAGCCGCAATTGAATTGGCCAACGGGATGGGGGACAAACCATATGGCTTCAATGGGAGGGCCTCTTGCAGAGGCTCTGCGTTCCTCCAACTCCAACTCCAACTCCTCACCGACCAGCGTTCTTCATCAGTTGCCTCGCGGCTCTGTCTCTGAAACTAACTTCATCAGCACCTGA

Protein Analysis

398

Amino Acids

43.54

Weight (kDa)

8.73

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 87 - 119 2.4e-13 QLQ
WRC PF08879 153 - 195 8.1e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012002)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 128
AccI GTMKAC 1 cut(s) 983
AccII CGCG 2 cut(s) 555, 1158
AclWI GGATC 2 cut(s) 449, 462
AcoI YGGCCR 2 cut(s) 863, 1037
AcuI CTGAAG 3 cut(s) 83, 244, 332
AcvI CACGTG 1 cut(s) 547
AfaI GTAC 5 cut(s) 153, 311, 410, 434, 533
AfiI CCNNNNNNNGG 7 cut(s) 128, 248, 249, 474, 805, 883, 890
AflIII ACRYGT 1 cut(s) 966
AgeI ACCGGT 1 cut(s) 521
AgsI TTSAA 6 cut(s) 404, 570, 824, 976, 1033, 1071
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 3 cut(s) 242, 467, 1003
Alw21I GWGCWC 3 cut(s) 96, 506, 552
Alw26I GTCTC 2 cut(s) 504, 1171
Alw44I GTGCAC 1 cut(s) 548
AlwI GGATC 2 cut(s) 449, 462
AlwNI CAGNNNCTG 2 cut(s) 128, 1191
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 6 cut(s) 447, 845, 863, 1006, 1037, 1079
ApaLI GTGCAC 1 cut(s) 548
ApeKI GCWGC 4 cut(s) 289, 326, 653, 1021
AsiGI ACCGGT 1 cut(s) 521
Asp700I GAANNNNTTC 2 cut(s) 345, 565
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 3 cut(s) 447, 696, 1079
AsuC2I CCSGG 2 cut(s) 715, 867
AsuHPI GGTGA 2 cut(s) 580, 1119
AsuNHI GCTAGC 1 cut(s) 905
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 1 cut(s) 696
BaeGI GKGCMC 1 cut(s) 552
BalI TGGCCA 1 cut(s) 1039
BamHI GGATCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 547
Bbv12I GWGCWC 3 cut(s) 96, 506, 552
BbvI GCAGC 4 cut(s) 276, 313, 665, 1033
BccI CCATC 5 cut(s) 241, 479, 686, 737, 1041
BceAI ACGGC 1 cut(s) 641
BciT130I CCWGG 3 cut(s) 244, 469, 1005
BcnI CCSGG 2 cut(s) 715, 867
BcoDI GTCTC 2 cut(s) 504, 1171
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 290
BfoI RGCGCY 1 cut(s) 544
BisI GCNGC 8 cut(s) 290, 327, 618, 654, 845, 1022, 1025, 1159
BlsI GCNGC 8 cut(s) 291, 328, 619, 655, 846, 1023, 1026, 1160
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 5 cut(s) 244, 469, 715, 867, 1005
Bme18I GGWCC 1 cut(s) 696
BmeT110I CYCGRG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 3 cut(s) 447, 696, 1079
BmiI GGNNCC 5 cut(s) 448, 456, 473, 697, 698
BmrFI CCNGG 5 cut(s) 244, 469, 715, 867, 1005
BmrI ACTGGG 1 cut(s) 445
BmtI GCTAGC 1 cut(s) 909
BmuI ACTGGG 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 2 cut(s) 110, 305
BpuMI CCSGG 2 cut(s) 715, 867
Bsa29I ATCGAT 1 cut(s) 732
BsaAI YACGTR 2 cut(s) 547, 947
BsaJI CCNNGG 3 cut(s) 242, 450, 553
BsaWI WCCGGW 2 cut(s) 521, 883
BsaXI ACNNNNNCTCC 6 cut(s) 618, 648, 1100, 1106, 1130, 1136
Bsc4I CCNNNNNNNGG 7 cut(s) 128, 248, 249, 474, 805, 883, 890
Bse118I RCCGGY 2 cut(s) 521, 986
Bse1I ACTGG 2 cut(s) 440, 866
Bse3DI GCAATG 3 cut(s) 26, 907, 997
BseBI CCWGG 3 cut(s) 244, 469, 1005
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 242, 450, 553
BseGI GGATG 3 cut(s) 252, 697, 1052
BseLI CCNNNNNNNGG 7 cut(s) 128, 248, 249, 474, 805, 883, 890
BseMI GCAATG 3 cut(s) 26, 907, 997
BseNI ACTGG 2 cut(s) 440, 866
BseRI GAGGAG 4 cut(s) 639, 642, 645, 1114
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 4 cut(s) 276, 313, 665, 1033
Bsh1236I CGCG 2 cut(s) 555, 1158
BshFI GGCC 6 cut(s) 449, 847, 865, 1008, 1039, 1081
BshNI GGYRCC 1 cut(s) 471
BshTI ACCGGT 1 cut(s) 521
BshVI ATCGAT 1 cut(s) 732
BsiHKAI GWGCWC 3 cut(s) 96, 506, 552
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 7 cut(s) 475, 522, 621, 714, 866, 884, 987
BslFI GGGAC 4 cut(s) 706, 709, 882, 1066
BslI CCNNNNNNNGG 7 cut(s) 128, 248, 249, 474, 805, 883, 890
BsmAI GTCTC 2 cut(s) 504, 1171
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 4 cut(s) 706, 709, 882, 1066
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 6 cut(s) 449, 847, 865, 1008, 1039, 1081
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 3 cut(s) 96, 506, 552
Bsp143I GATC 2 cut(s) 454, 733
Bsp19I CCATGG 1 cut(s) 450
BspANI GGCC 6 cut(s) 449, 847, 865, 1008, 1039, 1081
BspDI ATCGAT 1 cut(s) 732
BspFNI CGCG 2 cut(s) 555, 1158
BspLI GGNNCC 5 cut(s) 448, 456, 473, 697, 698
BspMAI CTGCAG 1 cut(s) 294
BspOI GCTAGC 1 cut(s) 909
BspPI GGATC 2 cut(s) 449, 462
BspT107I GGYRCC 1 cut(s) 471
BsrDI GCAATG 3 cut(s) 26, 907, 997
BsrFI RCCGGY 2 cut(s) 521, 986
BsrI ACTGG 2 cut(s) 440, 866
BssAI RCCGGY 2 cut(s) 521, 986
BssECI CCNNGG 3 cut(s) 242, 450, 553
BssMI GATC 2 cut(s) 454, 733
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 244, 469, 1005
Bst4CI ACNGT 3 cut(s) 408, 566, 664
Bst6I CTCTTC 2 cut(s) 405, 436
BstBAI YACGTR 2 cut(s) 547, 947
BstC8I GCNNGC 4 cut(s) 294, 318, 539, 907
BstDSI CCRYGG 2 cut(s) 450, 553
BstF5I GGATG 3 cut(s) 252, 697, 1052
BstFNI CGCG 2 cut(s) 555, 1158
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 2 cut(s) 457, 736
BstMAI GTCTC 2 cut(s) 504, 1171
BstMBI GATC 2 cut(s) 454, 733
BstMWI GCNNNNNNNGC 7 cut(s) 227, 261, 289, 326, 547, 871, 906
BstNI CCWGG 3 cut(s) 244, 469, 1005
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 5 cut(s) 242, 467, 713, 865, 1003
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 2 cut(s) 555, 1158
BstV1I GCAGC 4 cut(s) 276, 313, 665, 1033
BstX2I RGATCY 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 1047
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 6 cut(s) 449, 847, 865, 1008, 1039, 1081
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 2 cut(s) 450, 553
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 3 cut(s) 252, 697, 1052
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 4 cut(s) 294, 318, 539, 907
CaiI CAGNNNCTG 2 cut(s) 128, 1191
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 2 cut(s) 521, 986
Cfr13I GGNCC 3 cut(s) 447, 696, 1079
Cfr42I CCGCGG 1 cut(s) 556
ClaI ATCGAT 1 cut(s) 732
CsiI ACCWGGT 1 cut(s) 467
Csp6I GTAC 5 cut(s) 152, 310, 409, 433, 532
CspAI ACCGGT 1 cut(s) 521
CviAII CATG 5 cut(s) 38, 265, 313, 451, 773
CviQI GTAC 5 cut(s) 152, 310, 409, 433, 532
DpnI GATC 2 cut(s) 456, 735
DpnII GATC 2 cut(s) 454, 733
EaeI YGGCCR 2 cut(s) 863, 1037
Eam1104I CTCTTC 2 cut(s) 405, 436
EarI CTCTTC 2 cut(s) 405, 436
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 696
Eco57I CTGAAG 3 cut(s) 83, 244, 332
Eco72I CACGTG 1 cut(s) 547
Eco88I CYCGRG 1 cut(s) 507
EcoO109I RGGNCCY 2 cut(s) 696, 1079
EcoRII CCWGG 3 cut(s) 242, 467, 1003
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 5 cut(s) 41, 268, 316, 454, 776
FaiI YATR 9 cut(s) 39, 135, 266, 314, 452, 774, 837, 1062, 1064
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 4 cut(s) 706, 709, 882, 1066
FatI CATG 5 cut(s) 37, 264, 312, 450, 772
FauNDI CATATG 1 cut(s) 1062
FblI GTMKAC 1 cut(s) 983
Fnu4HI GCNGC 8 cut(s) 290, 327, 618, 654, 845, 1022, 1025, 1159
FokI GGATG 3 cut(s) 259, 704, 1059
Fsp4HI GCNGC 8 cut(s) 290, 327, 618, 654, 845, 1022, 1025, 1159
FspBI CTAG 1 cut(s) 906
GlaI GCGC 1 cut(s) 542
GluI GCNGC 8 cut(s) 290, 327, 618, 654, 845, 1022, 1025, 1159
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 6 cut(s) 449, 847, 865, 1008, 1039, 1081
HapII CCGG 7 cut(s) 475, 522, 621, 714, 866, 884, 987
HhaI GCGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 41, 268, 316, 454, 776
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HinfI GANTC 4 cut(s) 41, 200, 268, 764
HpaII CCGG 7 cut(s) 475, 522, 621, 714, 866, 884, 987
HphI GGTGA 2 cut(s) 580, 1119
Hpy166II GTNNAC 2 cut(s) 550, 984
Hpy188I TCNGA 8 cut(s) 46, 102, 199, 528, 691, 829, 964, 1171
Hpy188III TCNNGA 7 cut(s) 338, 358, 458, 507, 509, 570, 813
Hpy8I GTNNAC 2 cut(s) 550, 984
HpyAV CCTTC 3 cut(s) 107, 377, 735
HpyCH4III ACNGT 3 cut(s) 408, 566, 664
HpyCH4IV ACGT 4 cut(s) 513, 546, 946, 966
HpyCH4V TGCA 5 cut(s) 292, 373, 424, 550, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 227, 261, 289, 326, 547, 871, 906
HpySE526I ACGT 4 cut(s) 513, 546, 946, 966
Hsp92II CATG 5 cut(s) 41, 268, 316, 454, 776
HspAI GCGC 1 cut(s) 541
KflI GGGWCCC 1 cut(s) 696
KspI CCGCGG 1 cut(s) 556
Kzo9I GATC 2 cut(s) 454, 733
LmnI GCTCC 3 cut(s) 252, 744, 879
Lsp1109I GCAGC 4 cut(s) 276, 313, 665, 1033
MabI ACCWGGT 1 cut(s) 467
MaeI CTAG 1 cut(s) 906
MaeII ACGT 4 cut(s) 513, 546, 946, 966
MaeIII GTNAC 3 cut(s) 517, 586, 658
MalI GATC 2 cut(s) 456, 735
MboI GATC 2 cut(s) 454, 733
MboII GAAGA 9 cut(s) 57, 216, 250, 338, 376, 379, 392, 453, 1133
MfeI CAATTG 1 cut(s) 1028
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 3 cut(s) 96, 506, 552
MlsI TGGCCA 1 cut(s) 1039
MluCI AATT 3 cut(s) 380, 1028, 1033
MluNI TGGCCA 1 cut(s) 1039
MlyI GAGTC 3 cut(s) 50, 277, 773
MmeI TCCRAC 5 cut(s) 669, 852, 1131, 1137, 1143
Mox20I TGGCCA 1 cut(s) 1039
MroXI GAANNNNTTC 2 cut(s) 345, 565
MscI TGGCCA 1 cut(s) 1039
Msp20I TGGCCA 1 cut(s) 1039
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 7 cut(s) 475, 522, 621, 714, 866, 884, 987
MspR9I CCNGG 5 cut(s) 244, 469, 715, 867, 1005
MunI CAATTG 1 cut(s) 1028
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 3 cut(s) 244, 469, 1005
MvnI CGCG 2 cut(s) 555, 1158
MwoI GCNNNNNNNGC 7 cut(s) 227, 261, 289, 326, 547, 871, 906
NciI CCSGG 2 cut(s) 715, 867
NcoI CCATGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 1062
NdeII GATC 2 cut(s) 454, 733
NheI GCTAGC 1 cut(s) 905
NlaIII CATG 5 cut(s) 41, 268, 316, 454, 776
NlaIV GGNNCC 5 cut(s) 448, 456, 473, 697, 698
NmuCI GTSAC 2 cut(s) 517, 586
NspI RCATGY 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 507
PctI GAATGC 1 cut(s) 373
PdmI GAANNNNTTC 2 cut(s) 345, 565
PfeI GAWTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 521
PkrI GCNGC 8 cut(s) 291, 328, 619, 655, 846, 1023, 1026, 1160
PleI GAGTC 3 cut(s) 49, 276, 772
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 3 cut(s) 49, 276, 772
Ppu21I YACGTR 2 cut(s) 547, 947
PpuMI RGGWCCY 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 242, 467, 1003
PspCI CACGTG 1 cut(s) 547
PspGI CCWGG 3 cut(s) 242, 467, 1003
PspN4I GGNNCC 5 cut(s) 448, 456, 473, 697, 698
PspPI GGNCC 3 cut(s) 447, 696, 1079
PspPPI RGGWCCY 1 cut(s) 696
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 2 cut(s) 128, 1191
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 5 cut(s) 153, 311, 410, 434, 533
RsaNI GTAC 5 cut(s) 152, 310, 409, 433, 532
SacII CCGCGG 1 cut(s) 556
SatI GCNGC 8 cut(s) 290, 327, 618, 654, 845, 1022, 1025, 1159
Sau3AI GATC 2 cut(s) 454, 733
Sau96I GGNCC 3 cut(s) 447, 696, 1079
ScaI AGTACT 1 cut(s) 533
SchI GAGTC 3 cut(s) 50, 277, 773
ScrFI CCNGG 5 cut(s) 244, 469, 715, 867, 1005
SduI GDGCHC 3 cut(s) 96, 506, 552
SexAI ACCWGGT 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 507
Sfr303I CCGCGG 1 cut(s) 556
SgrBI CCGCGG 1 cut(s) 556
SinI GGWCC 1 cut(s) 696
SlaI CTCGAG 1 cut(s) 507
SmlI CTYRAG 4 cut(s) 14, 89, 284, 507
SmoI CTYRAG 4 cut(s) 14, 89, 284, 507
Sse9I AATT 3 cut(s) 380, 1028, 1033
SspMI CTAG 1 cut(s) 906
StyD4I CCNGG 5 cut(s) 242, 467, 713, 865, 1003
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 408, 566, 664
TaiI ACGT 4 cut(s) 516, 549, 949, 969
TaqI TCGA 4 cut(s) 508, 732, 855, 941
TasI AATT 3 cut(s) 380, 1028, 1033
TatI WGTACW 1 cut(s) 531
TauI GCSGC 4 cut(s) 620, 847, 1027, 1161
TfiI GAWTC 1 cut(s) 200
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 2 cut(s) 517, 586
TseI GCWGC 4 cut(s) 289, 326, 653, 1021
Tsp45I GTSAC 2 cut(s) 517, 586
TspDTI ATGAA 3 cut(s) 929, 1133, 1171
TspRI CASTG 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 128
VneI GTGCAC 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 696
XceI RCATGY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 983
XmnI GAANNNNTTC 2 cut(s) 345, 565
XspI CTAG 1 cut(s) 906
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.