Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009938

Physical Location & Seq

Genomic Coordinates Forward (+)

19634331 .. 19636845

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGAGTACTCAAGCGACGGGTCCTTCTTCAACATCAGGGAGGAGAAGCAATTCTACTGTACGGCGAGGACCACCACCTTCTAAGAAACCAGTACAATCAGAGAATGGAAGTGTTAATGGGAACACCTCAAAACCCAATTCACCTCCTCCTCAACCTCAATCTCAAGCTCCTTCTAATGGAGAGAGAACAGTGAAGAAGCTTAGGTTATCGAAAGCTCTTACTATTCCTGAAGGAACTACTGTTTTCGATGCTTGTCGAAGAATGGCTGCTAGGCGTGTTGATGCTTGTTTGTTGACTGATTCAAGTGCGCTTCTTTCCGGGATTGTTACTGATAAAGATGTAGCTACAAGAGTGATTGCTGAAGGGTTGAGACCGGATCAAACTTTGGTCTCTAAGGTTATGACTAGGAATCCTATTTTTGTTACTTCTGATTCGTTGGCGCTTGAGGCTCTTCAGAAGATGGTTCAAGGGAAGTTTAGACACTTGCCTGTTGTGGAGAATGGTGAAGTCATTGCTTTGTTGGATATTACAAAGTGTTTGTATGATGCTATTTCTAGGATGGAGAAAGCTGCAGAGCAAGGTAGTGCTTTAGCTGCTGCAGTGGAAGGTGTGGAGAAGCAATGGGGAAGCGGATATTCTGCACCGTATGCTTTCATTGAAACCTTGAGGGAGAGAATGTTTAAACCCGCCTTGTCAACGATTATTACAGACAATTCGAAGGTTGCACTTGTAGCACCATCAGATCCTGTTTCAGTTGCTGCGAAAAGGATGAGGGATTTGCGGGTTAACTCTGTAATCATTTCCACGGGGAACAAAATCAGTGGAATCTTGACTTCAAAGGACATTCTGATGCGAGTGGTGGCACAAAATTTATCTCCTGAATTGACTCTTGTCGAGAAGGTAATGACACCGAATCCTGAATGTGCATCGCTAGAGACAACGATTCTGGATGCGTTGCATACAATGCATGATGGAAAGTTTCTACATCTTCCAATTATAGATAAAGATGGATCAGCTGCAGCTTGTGTAGACGTTCTTCAGATTACTCACGCAGCTATTTCAATGGTGGAGAACAGTTCTGGAGCTGTAAATGATATGGCAAACACGATGATGCAGAAATTTTGGGATTCAGCTCTTGCGTTAGAGCCACCTGATGATTCTGACACTCAAAGTGAAATGTCGGCAATGATGCATCATTCAGATATAGGGAAGCTCAGTTCTTACCCATCTCTAGGACTAGGGAATTCGTTTTCGTTCAAATTTGAAGACCTTAAGGGCCGTGTACATCGGTTTACTTCTGGAGCTGAAAACCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAATTGGCAGCGACAATAACAATGTGGAACAACGGCCTCAGATTATATATGAGGACGATGAAGGTGATAAGGTTTTGATTACATCGGATAGCGATTTGGTTGGTGCTGTTACTCTTGCTAGGTCTACAGGACAAAAGGTTTTGAGGCTGCATCTGGACTTCACTGAGTCAACAAGGAGCTTGAGCTCAGAAACCACCCAACTCAAGAAAGGTGATTCTCGAGACAGAGGAAGCGGATGGGTTTCATGGCGTGGTGGTGTGGTGGTTACAGGAGCTGTTGTCCTAACAAGCATAGCCATAGTTGTTTACTTGAAGCGTTCAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

556

Amino Acids

60.03

Weight (kDa)

7.13

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	130 - 176	4.6e-09	CBS domain
CBS	PF00571	239 - 286	5e-06	CBS domain
PB1	PF00564	417 - 500	1.3e-17	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52950 AT3G52950
fragaria_vesca	FvH4_1g25510 FvH4_1g25510
malus_domestica	MD08G1219400.v1.1 MD15G1408000.v1.1
prunus_persica	Prupe.1G553500_v2.0.a1
pyrus_communis	pycom08g19040 pycom15g36410
rosa_chinensis	RchiOBHm_Chr2g0123641
rosa_laevigata	RLG00000018765
rosa_multiflora	Rmu_co8197906.1_g000001 Rmu_sc0004915.1_g000016
rosa_roxburghii	Rroxscaffold_2G00120490
rosa_rugosa	Rorug02G0246700 Rorug02G0246800
rosa_samantha	Rh2AG305900 Rh2BG313900 Rh2CG292200 Rh2DG329700
rosa_wichuraiana	Rw2G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1029, 1466
AciI	CCGC	4 cut(s)	630, 687, 781, 1575
AclWI	GGATC	3 cut(s)	384, 737, 1018
AcsI	RAATTY	4 cut(s)	868, 1118, 1243, 1259
AcuI	CTGAAG	4 cut(s)	249, 381, 437, 1022
AfaI	GTAC	4 cut(s)	7, 60, 93, 1284
AfiI	CCNNNNNNNGG	2 cut(s)	176, 1232
AflII	CTTAAG	1 cut(s)	1271
AloI	GAACNNNNNNTCC	2 cut(s)	1201, 1233
Alw21I	GWGCWC	1 cut(s)	1529
Alw26I	GTCTC	4 cut(s)	364, 394, 929, 1557
AlwI	GGATC	3 cut(s)	384, 737, 1018
AlwNI	CAGNNNCTG	3 cut(s)	746, 758, 1616
Ama87I	CYCGRG	1 cut(s)	1560
AoxI	GGCC	2 cut(s)	1276, 1376
ApoI	RAATTY	4 cut(s)	868, 1118, 1243, 1259
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	2 cut(s)	310, 442
AspS9I	GGNCC	3 cut(s)	20, 68, 1276
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	4 cut(s)	132, 515, 1418, 1565
AsuII	TTCGAA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	1560
AvaII	GGWCC	2 cut(s)	20, 68
BanII	GRGCYC	1 cut(s)	1529
BarI	GAAGNNNNNNTAC	4 cut(s)	37, 69, 1020, 1052
BbsI	GAAGAC	1 cut(s)	1272
Bbv12I	GWGCWC	1 cut(s)	1529
BccI	CCATC	8 cut(s)	454, 553, 745, 965, 1001, 1234, 1318, 1572
BceAI	ACGGC	3 cut(s)	77, 1263, 1391
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	4 cut(s)	364, 394, 929, 1557
BfaI	CTAG	7 cut(s)	270, 405, 555, 932, 1232, 1238, 1461
BfmI	CTRYAG	4 cut(s)	570, 597, 1017, 1467
BfoI	RGCGCY	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	1271
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	2 cut(s)	20, 68
BmeT110I	CYCGRG	1 cut(s)	1560
BmgT120I	GGNCC	3 cut(s)	20, 68, 1276
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	319
BoxI	GACNNNNGTC	1 cut(s)	890
BpiI	GAAGAC	1 cut(s)	1272
BpmI	CTGGAG	2 cut(s)	1101, 1320
Bpu10I	CCTNAGC	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	716
BpuEI	CTTGAG	5 cut(s)	147, 464, 685, 1529, 1543
BpuMI	CCSGG	1 cut(s)	319
BsaI	GGTCTC	2 cut(s)	364, 394
BsaJI	CCNNGG	1 cut(s)	804
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	4 cut(s)	662, 692, 1605, 1635
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 1232
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	3 cut(s)	510, 626, 1191
BseDI	CCNNGG	1 cut(s)	804
BseGI	GGATG	4 cut(s)	564, 774, 955, 1583
BseLI	CCNNNNNNNGG	2 cut(s)	176, 1232
BseMI	GCAATG	3 cut(s)	510, 626, 1191
BseMII	CTCAG	4 cut(s)	1228, 1394, 1497, 1542
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	3 cut(s)	55, 135, 138
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	1278, 1378
BsiHKAI	GWGCWC	1 cut(s)	1529
BsiHKCI	CYCGRG	1 cut(s)	1560
BsiSI	CCGG	2 cut(s)	318, 374
BslI	CCNNNNNNNGG	2 cut(s)	176, 1232
BsmAI	GTCTC	4 cut(s)	364, 394, 929, 1557
BsnI	GGCC	2 cut(s)	1278, 1378
Bso31I	GGTCTC	2 cut(s)	364, 394
BsoBI	CYCGRG	1 cut(s)	1560
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	1529
Bsp1407I	TGTACA	1 cut(s)	1282
Bsp143I	GATC	3 cut(s)	376, 742, 1010
BspACI	CCGC	4 cut(s)	630, 687, 781, 1575
BspANI	GGCC	2 cut(s)	1278, 1378
BspCNI	CTCAG	4 cut(s)	1227, 1393, 1498, 1541
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	3 cut(s)	574, 601, 1021
BspPI	GGATC	3 cut(s)	384, 737, 1018
BspQI	GCTCTTC	2 cut(s)	456, 1311
BspT104I	TTCGAA	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	1271
BspTNI	GGTCTC	2 cut(s)	364, 394
BsrDI	GCAATG	3 cut(s)	510, 626, 1191
BsrGI	TGTACA	1 cut(s)	1282
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	804
BssMI	GATC	3 cut(s)	376, 742, 1010
Bst4CI	ACNGT	5 cut(s)	58, 190, 241, 645, 1076
Bst6I	CTCTTC	2 cut(s)	456, 1311
BstAFI	CTTAAG	1 cut(s)	1271
BstAPI	GCANNNNNTGC	2 cut(s)	647, 964
BstAUI	TGTACA	1 cut(s)	1282
BstBI	TTCGAA	1 cut(s)	716
BstDEI	CTNAG	7 cut(s)	81, 200, 393, 1214, 1380, 1506, 1528
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	4 cut(s)	564, 774, 955, 1583
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	310, 442
BstKTI	GATC	3 cut(s)	379, 745, 1013
BstMAI	GTCTC	4 cut(s)	364, 394, 929, 1557
BstMBI	GATC	3 cut(s)	376, 742, 1010
BstMWI	GCNNNNNNNGC	5 cut(s)	446, 593, 647, 731, 964
BstPAI	GACNNNNGTC	1 cut(s)	890
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	4 cut(s)	570, 597, 1017, 1467
BstV2I	GAAGAC	1 cut(s)	1272
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	1278, 1378
BtgI	CCRYGG	1 cut(s)	804
BtgZI	GCGATG	1 cut(s)	912
BtsCI	GGATG	4 cut(s)	564, 774, 955, 1583
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	4 cut(s)	195, 606, 826, 1503
CaiI	CAGNNNCTG	3 cut(s)	746, 758, 1616
CfoI	GCGC	2 cut(s)	310, 442
Cfr13I	GGNCC	3 cut(s)	20, 68, 1276
Csp6I	GTAC	4 cut(s)	6, 59, 92, 1283
CspCI	CAANNNNNGTGG	2 cut(s)	802, 837
CviAII	CATG	2 cut(s)	968, 1587
CviQI	GTAC	4 cut(s)	6, 59, 92, 1283
DdeI	CTNAG	7 cut(s)	81, 200, 393, 1214, 1380, 1506, 1528
DpnI	GATC	3 cut(s)	378, 744, 1012
DpnII	GATC	3 cut(s)	376, 742, 1010
DraI	TTTAAA	1 cut(s)	682
Eam1104I	CTCTTC	2 cut(s)	456, 1311
EarI	CTCTTC	2 cut(s)	456, 1311
Ecl136II	GAGCTC	1 cut(s)	1527
Eco24I	GRGCYC	1 cut(s)	1529
Eco31I	GGTCTC	2 cut(s)	364, 394
Eco47I	GGWCC	2 cut(s)	20, 68
Eco53kI	GAGCTC	1 cut(s)	1527
Eco57I	CTGAAG	4 cut(s)	249, 381, 437, 1022
Eco88I	CYCGRG	1 cut(s)	1560
EcoICRI	GAGCTC	1 cut(s)	1527
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	1243
EcoT22I	ATGCAT	2 cut(s)	969, 1194
EcoT38I	GRGCYC	1 cut(s)	1529
FaeI	CATG	2 cut(s)	971, 1590
FatI	CATG	2 cut(s)	967, 1586
FauI	CCCGC	2 cut(s)	694, 774
FblI	GTMKAC	2 cut(s)	1029, 1466
FokI	GGATG	4 cut(s)	571, 781, 962, 1590
FriOI	GRGCYC	1 cut(s)	1529
FspBI	CTAG	7 cut(s)	270, 405, 555, 932, 1232, 1238, 1461
GlaI	GCGC	2 cut(s)	309, 441
GsuI	CTGGAG	2 cut(s)	1101, 1320
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	1278, 1378
HapII	CCGG	2 cut(s)	318, 374
HhaI	GCGC	2 cut(s)	310, 442
Hin1II	CATG	2 cut(s)	971, 1590
Hin6I	GCGC	2 cut(s)	308, 440
HinP1I	GCGC	2 cut(s)	308, 440
HincII	GTYRAC	4 cut(s)	294, 696, 787, 1512
HindII	GTYRAC	4 cut(s)	294, 696, 787, 1512
HindIII	AAGCTT	1 cut(s)	197
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	2 cut(s)	318, 374
HphI	GGTGA	4 cut(s)	132, 515, 1418, 1565
Hpy166II	GTNNAC	9 cut(s)	294, 696, 787, 1030, 1283, 1293, 1467, 1512, 1648
Hpy8I	GTNNAC	9 cut(s)	294, 696, 787, 1030, 1283, 1293, 1467, 1512, 1648
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	9 cut(s)	33, 87, 180, 224, 356, 599, 712, 892, 1397
HpyCH4III	ACNGT	5 cut(s)	58, 190, 241, 645, 1076
HpyCH4IV	ACGT	1 cut(s)	1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	446, 593, 647, 731, 964
HpyF3I	CTNAG	7 cut(s)	81, 200, 393, 1214, 1380, 1506, 1528
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	2 cut(s)	971, 1590
HspAI	GCGC	2 cut(s)	308, 440
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	376, 742, 1010
LguI	GCTCTTC	2 cut(s)	456, 1311
LmnI	GCTCC	5 cut(s)	172, 1082, 1301, 1518, 1613
MaeI	CTAG	7 cut(s)	270, 405, 555, 932, 1232, 1238, 1461
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	4 cut(s)	325, 421, 1450, 1606
MalI	GATC	3 cut(s)	378, 744, 1012
MboI	GATC	3 cut(s)	376, 742, 1010
MboII	GAAGA	9 cut(s)	18, 205, 270, 443, 469, 980, 1028, 1277, 1328
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	1529
MlyI	GAGTC	2 cut(s)	880, 1517
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	2 cut(s)	969, 1194
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	4 cut(s)	114, 681, 786, 1272
MslI	CAYNNNNRTG	2 cut(s)	848, 1109
MspA1I	CMGCKG	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	1271
MspI	CCGG	2 cut(s)	318, 374
MspR9I	CCNGG	1 cut(s)	319
MssI	GTTTAAAC	1 cut(s)	682
MwoI	GCNNNNNNNGC	5 cut(s)	446, 593, 647, 731, 964
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	3 cut(s)	376, 742, 1010
NlaIII	CATG	2 cut(s)	971, 1590
NlaIV	GGNNCC	1 cut(s)	21
NsiI	ATGCAT	2 cut(s)	969, 1194
NspV	TTCGAA	1 cut(s)	716
PaeR7I	CTCGAG	1 cut(s)	1560
PciSI	GCTCTTC	2 cut(s)	456, 1311
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	9 cut(s)	299, 409, 431, 825, 913, 943, 1127, 1157, 1556
PfoI	TCCNGGA	1 cut(s)	317
PleI	GAGTC	2 cut(s)	880, 1516
PmeI	GTTTAAAC	1 cut(s)	682
PpsI	GAGTC	2 cut(s)	880, 1516
PpuMI	RGGWCCY	1 cut(s)	20
PshAI	GACNNNNGTC	1 cut(s)	890
Psp124BI	GAGCTC	1 cut(s)	1529
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	20, 68, 1276
PspPPI	RGGWCCY	1 cut(s)	20
PstI	CTGCAG	3 cut(s)	574, 601, 1021
PstNI	CAGNNNCTG	3 cut(s)	746, 758, 1616
PsuI	RGATCY	1 cut(s)	742
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	4 cut(s)	7, 60, 93, 1284
RsaNI	GTAC	4 cut(s)	6, 59, 92, 1283
RseI	CAYNNNNRTG	2 cut(s)	848, 1109
SacI	GAGCTC	1 cut(s)	1529
SapI	GCTCTTC	2 cut(s)	456, 1311
SaqAI	TTAA	4 cut(s)	114, 681, 786, 1272
Sau3AI	GATC	3 cut(s)	376, 742, 1010
Sau96I	GGNCC	3 cut(s)	20, 68, 1276
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	2 cut(s)	880, 1517
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	1529
SfcI	CTRYAG	4 cut(s)	570, 597, 1017, 1467
Sfr274I	CTCGAG	1 cut(s)	1560
SfuI	TTCGAA	1 cut(s)	716
SinI	GGWCC	2 cut(s)	20, 68
SlaI	CTCGAG	1 cut(s)	1560
SmiMI	CAYNNNNRTG	2 cut(s)	848, 1109
SmlI	CTYRAG	8 cut(s)	9, 162, 443, 664, 1271, 1522, 1544, 1560
SmoI	CTYRAG	8 cut(s)	9, 162, 443, 664, 1271, 1522, 1544, 1560
SsiI	CCGC	4 cut(s)	630, 687, 781, 1575
SspMI	CTAG	7 cut(s)	270, 405, 555, 932, 1232, 1238, 1461
SstI	GAGCTC	1 cut(s)	1529
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	5 cut(s)	58, 190, 241, 645, 1076
TaiI	ACGT	1 cut(s)	1035
TaqI	TCGA	7 cut(s)	209, 246, 256, 716, 894, 1314, 1561
TatI	WGTACW	3 cut(s)	5, 91, 1282
TfiI	GAWTC	9 cut(s)	299, 409, 431, 825, 913, 943, 1127, 1157, 1556
Tru1I	TTAA	4 cut(s)	114, 681, 786, 1272
Tru9I	TTAA	4 cut(s)	114, 681, 786, 1272
TscAI	CASTG	4 cut(s)	195, 606, 826, 1510
TspDTI	ATGAA	3 cut(s)	643, 1416, 1575
TspRI	CASTG	4 cut(s)	195, 606, 826, 1510
Vha464I	CTTAAG	1 cut(s)	1271
VpaK11BI	GGWCC	2 cut(s)	20, 68
XapI	RAATTY	4 cut(s)	868, 1118, 1243, 1259
XhoI	CTCGAG	1 cut(s)	1560
XmiI	GTMKAC	2 cut(s)	1029, 1466
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	7 cut(s)	270, 405, 555, 932, 1232, 1238, 1461
ZrmI	AGTACT	1 cut(s)	7
Zsp2I	ATGCAT	2 cut(s)	969, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.