Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009938

Physical Location & Seq

Genomic Coordinates Forward (+)

36964986 .. 36972980

Gene Structure 7995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGCTGCCCGGCGTGTGGATGCTGTGCTTTTGACCGATGCAAATGCATTGCTTTCTGGAATTGTGACTGACAAGGACATTGCCAGTAGGGTCATTGCAGAGGGATTGAGACCGGAGCAGACAATTGTATCAAAGATCATGACGCGGAATCCTATTTTTGTTAATGCTGACTCATTGGCCATGGAAGCTCTACAGAAGATGATCCAGGGTAAATTTAGGCACCTTCCTGTTGTAGAAAATGGTGAGGTTATTGCCTTGTTGGATATCACAAAATGCCTCTATGATGCTATATCAAGAATGGAAAAGGCAGCTGAGCAGGGGAGTGCCATTGCTGCTGCAGTTGAAGGAGTTGAACGCCAGTGGGGAGCCAATTTTTCTGCTCCATATGCTTTTCTGGAAACTCTGAGGGAGCGAATGTTCAAGCCTTCATTGTCAACCATCATTGGTGAAAACACAAAGGTTGCAATTGTATCCCCATCAGATCCTGTCTATGTTGCGGCAAAAAAGATGCGGGACTTTCGGGTTAATTCAGTTATAATTGTCATGGGGAACAAGATTCAAGGGATACTCACTTCAAAGGATATTTTAATGCGAGTCGTGGCACAAAATCTTTCTCCTGAGTTGACTCTGGTGGAAAAGGTAATGACGCCGAACCCTGAATGTGCTACATTAGAGACTACAATTCTTGATGCACTGCATATAATGCATGAAGGGAAGTTCTTGCATCTTCCTGTCTTAGACAGAGATGAATCTGTTGCTGCATGTGTGGATGTTCTGCAGATAACTCACGCAGCAATCTCTATGGTTGAAAGTAGTTCAGGAACCGTTAATGATATGGCAAACACAATGATGCAAAAGTTCTGGGATTCAGCACTTGCTTTAGAGCCGGCTGATGACTGTGATACTCAAAGTGAAATGTCTGCACTAATGGCTTCTGATGCGGCAGAACAAGCCAAGTTCACTTATCCTTCTATTGGTCTTGGAAATTCATTCGCCTTCAAGTTTGAAGATCGAAAAGGTCGAGTGCATCGACTCAATAGTGGCACAGAAAATTTAGATGAGCTTGTATCTGCTGTCATGCAAAGGACTGGTGGTGCTAAGGATAATGATCATCCTCAGATTTTGTATGAAGATGATGAAGGTGATAGAGTTCTACTTGCAAGTGATGATGATCTTGTTAGTGCTGTTAGCCATGCTCGAGCAGTGGGACAGAAGGTAGTGTTTATGCTTCATATATTATTTTTTCTAGAGGTTAATTGTTATATGGAGTCATGGACATACTTGTTGGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

431

Amino Acids

47.34

Weight (kDa)

4.93

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	43 - 89	2.2e-09	CBS domain
CBS	PF00571	151 - 199	6e-07	CBS domain
CBS	PF00571	211 - 250	5.5e-06	CBS domain
PB1	PF00564	331 - 410	1.4e-13	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52950 AT3G52950
fragaria_vesca	FvH4_1g25510 FvH4_1g25510
malus_domestica	MD08G1219400.v1.1 MD15G1408000.v1.1
prunus_persica	Prupe.1G553500_v2.0.a1
pyrus_communis	pycom08g19040 pycom15g36410
rosa_chinensis	RchiOBHm_Chr2g0123641
rosa_laevigata	RLG00000018765
rosa_multiflora	Rmu_co8197906.1_g000001 Rmu_sc0004915.1_g000016
rosa_roxburghii	Rroxscaffold_2G00120490
rosa_rugosa	Rorug02G0246700 Rorug02G0246800
rosa_samantha	Rh2AG305900 Rh2BG313900 Rh2CG292200 Rh2DG329700
rosa_wichuraiana	Rw2G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	145
AciI	CCGC	4 cut(s)	145, 497, 511, 941
AclWI	GGATC	2 cut(s)	196, 476
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	212, 985, 1051
AcyI	GRCGYC	1 cut(s)	647
AfiI	CCNNNNNNNGG	2 cut(s)	16, 974
AgsI	TTSAA	8 cut(s)	344, 353, 421, 560, 576, 809, 1000, 1007
AjnI	CCWGG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	188, 311, 1063
AluI	AGCT	3 cut(s)	188, 311, 1063
Alw26I	GTCTC	2 cut(s)	103, 668
AlwI	GGATC	2 cut(s)	196, 476
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	1197
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	6 cut(s)	5, 308, 332, 335, 758, 791
ApoI	RAATTY	3 cut(s)	212, 985, 1051
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	254, 458, 1154
AvaI	CYCGRG	1 cut(s)	1197
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	219
BbvI	GCAGC	5 cut(s)	319, 320, 322, 745, 803
BccI	CCATC	2 cut(s)	446, 484
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	206
BciVI	GTATCC	2 cut(s)	481, 558
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	103, 668
BfaI	CTAG	1 cut(s)	1247
BfmI	CTRYAG	3 cut(s)	191, 336, 776
BfuI	GTATCC	2 cut(s)	481, 558
BisI	GCNGC	8 cut(s)	6, 309, 333, 336, 498, 759, 792, 942
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	8 cut(s)	7, 310, 334, 337, 499, 760, 793, 943
Bme1390I	CCNGG	2 cut(s)	10, 206
BmeT110I	CYCGRG	1 cut(s)	1197
BmiI	GGNNCC	3 cut(s)	221, 367, 823
BmrFI	CCNGG	2 cut(s)	10, 206
BmsI	GCATC	9 cut(s)	10, 28, 274, 498, 679, 733, 840, 928, 1036
Bpu10I	CCTNAGC	1 cut(s)	1098
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	2 cut(s)	1107, 1170
BsaHI	GRCGYC	1 cut(s)	647
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	180, 205
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 974
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	3 cut(s)	84, 358, 1093
Bse3DI	GCAATG	4 cut(s)	47, 78, 93, 327
Bse8I	GATNNNNATC	2 cut(s)	1107, 1170
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	180, 205
BseGI	GGATG	3 cut(s)	25, 775, 1111
BseJI	GATNNNNATC	2 cut(s)	1107, 1170
BseLI	CCNNNNNNNGG	2 cut(s)	16, 974
BseMI	GCAATG	4 cut(s)	47, 78, 93, 327
BseMII	CTCAG	4 cut(s)	303, 395, 609, 1130
BseNI	ACTGG	3 cut(s)	84, 358, 1093
BseXI	GCAGC	5 cut(s)	319, 320, 322, 745, 803
BsgI	GTGCAG	1 cut(s)	906
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	1197
BsiSI	CCGG	3 cut(s)	10, 113, 887
BslFI	GGGAC	2 cut(s)	527, 1221
BslI	CCNNNNNNNGG	2 cut(s)	16, 974
BsmAI	GTCTC	2 cut(s)	103, 668
BsmFI	GGGAC	2 cut(s)	527, 1221
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	1197
Bsp143I	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	4 cut(s)	145, 497, 511, 941
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	4 cut(s)	304, 396, 610, 1129
BspFNI	CGCG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	221, 367, 823
BspMAI	CTGCAG	2 cut(s)	340, 780
BspPI	GGATC	2 cut(s)	196, 476
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	4 cut(s)	47, 78, 93, 327
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	3 cut(s)	84, 358, 1093
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	2 cut(s)	180, 205
BssMI	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
BssNI	GRCGYC	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	826, 899
BstACI	GRCGYC	1 cut(s)	647
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	888
BstDEI	CTNAG	6 cut(s)	312, 404, 618, 736, 1098, 1116
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	25, 775, 1111
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	6 cut(s)	138, 204, 484, 1012, 1111, 1174
BstMAI	GTCTC	2 cut(s)	103, 668
BstMBI	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 332, 386, 703, 929, 938, 950
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	2 cut(s)	8, 204
BstSFI	CTRYAG	3 cut(s)	191, 336, 776
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	5 cut(s)	319, 320, 322, 745, 803
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuI	GTATCC	2 cut(s)	481, 558
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	25, 775, 1111
BtsI	GCAGTG	2 cut(s)	692, 1209
BtsIMutI	CAGTG	3 cut(s)	365, 692, 1209
Cac8I	GCNNGC	1 cut(s)	888
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	886
CseI	GACGC	2 cut(s)	151, 655
CviAII	CATG	8 cut(s)	139, 181, 544, 707, 762, 1078, 1193, 1272
DdeI	CTNAG	6 cut(s)	312, 404, 618, 736, 1098, 1116
DpnI	GATC	6 cut(s)	137, 203, 483, 1011, 1110, 1173
DpnII	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
EaeI	YGGCCR	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	1197
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	2 cut(s)	49, 708
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	8 cut(s)	142, 184, 547, 710, 765, 1081, 1196, 1275
FaqI	GGGAC	2 cut(s)	527, 1221
FatI	CATG	8 cut(s)	138, 180, 543, 706, 761, 1077, 1192, 1271
FauI	CCCGC	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	1108
Fnu4HI	GCNGC	8 cut(s)	6, 309, 333, 336, 498, 759, 792, 942
FokI	GGATG	3 cut(s)	32, 782, 1098
Fsp4HI	GCNGC	8 cut(s)	6, 309, 333, 336, 498, 759, 792, 942
FspBI	CTAG	1 cut(s)	1247
GluI	GCNGC	8 cut(s)	6, 309, 333, 336, 498, 759, 792, 942
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	3 cut(s)	10, 113, 887
HgaI	GACGC	2 cut(s)	151, 655
Hin1I	GRCGYC	1 cut(s)	647
Hin1II	CATG	8 cut(s)	142, 184, 547, 710, 765, 1081, 1196, 1275
HincII	GTYRAC	2 cut(s)	435, 624
HindII	GTYRAC	2 cut(s)	435, 624
HinfI	GANTC	9 cut(s)	148, 170, 556, 594, 625, 749, 866, 1032, 1268
HpaII	CCGG	3 cut(s)	10, 113, 887
HphI	GGTGA	3 cut(s)	254, 458, 1154
Hpy166II	GTNNAC	3 cut(s)	435, 624, 960
Hpy188I	TCNGA	4 cut(s)	405, 481, 937, 1119
Hpy188III	TCNNGA	8 cut(s)	57, 139, 294, 395, 617, 686, 819, 1247
Hpy8I	GTNNAC	3 cut(s)	435, 624, 960
HpyAV	CCTTC	8 cut(s)	233, 338, 435, 704, 978, 1006, 1133, 1207
HpyCH4III	ACNGT	2 cut(s)	826, 899
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 332, 386, 703, 929, 938, 950
HpyF3I	CTNAG	6 cut(s)	312, 404, 618, 736, 1098, 1116
Hsp92I	GRCGYC	1 cut(s)	647
Hsp92II	CATG	8 cut(s)	142, 184, 547, 710, 765, 1081, 1196, 1275
KroI	GCCGGC	1 cut(s)	886
KroNI	GCCGGC	1 cut(s)	888
Ksp22I	TGATCA	1 cut(s)	1108
Kzo9I	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
LmnI	GCTCC	4 cut(s)	115, 365, 385, 409
Lsp1109I	GCAGC	5 cut(s)	319, 320, 322, 745, 803
LweI	GCATC	9 cut(s)	10, 28, 274, 498, 679, 733, 840, 928, 1036
MaeI	CTAG	1 cut(s)	1247
MaeIII	GTNAC	2 cut(s)	64, 1288
MalI	GATC	6 cut(s)	137, 203, 483, 1011, 1110, 1173
MboI	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
MboII	GAAGA	4 cut(s)	208, 719, 1019, 1142
MfeI	CAATTG	2 cut(s)	123, 465
MflI	RGATCY	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	5 cut(s)	164, 603, 619, 1026, 1277
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	94, 238, 287, 399, 1125, 1243
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	2 cut(s)	49, 708
MroNI	GCCGGC	1 cut(s)	886
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	6 cut(s)	162, 525, 587, 828, 1254, 1294
MslI	CAYNNNNRTG	1 cut(s)	848
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	10, 113, 887
MspR9I	CCNGG	2 cut(s)	10, 206
MunI	CAATTG	2 cut(s)	123, 465
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	7 cut(s)	185, 332, 386, 703, 929, 938, 950
NaeI	GCCGGC	1 cut(s)	888
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
NgoMIV	GCCGGC	1 cut(s)	886
NlaIII	CATG	8 cut(s)	142, 184, 547, 710, 765, 1081, 1196, 1275
NlaIV	GGNNCC	3 cut(s)	221, 367, 823
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	2 cut(s)	49, 708
NspI	RCATGY	1 cut(s)	765
PaeR7I	CTCGAG	1 cut(s)	1197
PagI	TCATGA	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	1018, 1027
PdiI	GCCGGC	1 cut(s)	888
PfeI	GAWTC	4 cut(s)	148, 556, 749, 866
PkrI	GCNGC	8 cut(s)	7, 310, 334, 337, 499, 760, 793, 943
PleI	GAGTC	5 cut(s)	164, 602, 619, 1026, 1276
PpsI	GAGTC	5 cut(s)	164, 602, 619, 1026, 1276
PsiI	TTATAA	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	221, 367, 823
PspXI	VCTCGAGB	1 cut(s)	1197
PstI	CTGCAG	2 cut(s)	340, 780
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	848
SaqAI	TTAA	6 cut(s)	162, 525, 587, 828, 1254, 1294
SatI	GCNGC	8 cut(s)	6, 309, 333, 336, 498, 759, 792, 942
Sau3AI	GATC	6 cut(s)	135, 201, 481, 1009, 1108, 1171
SchI	GAGTC	5 cut(s)	164, 603, 619, 1026, 1277
ScrFI	CCNGG	2 cut(s)	10, 206
SfaNI	GCATC	9 cut(s)	10, 28, 274, 498, 679, 733, 840, 928, 1036
SfcI	CTRYAG	3 cut(s)	191, 336, 776
Sfr274I	CTCGAG	1 cut(s)	1197
SlaI	CTCGAG	1 cut(s)	1197
SmiMI	CAYNNNNRTG	1 cut(s)	848
SmlI	CTYRAG	1 cut(s)	1197
SmoI	CTYRAG	1 cut(s)	1197
SsiI	CCGC	4 cut(s)	145, 497, 511, 941
SspMI	CTAG	1 cut(s)	1247
StyD4I	CCNGG	2 cut(s)	8, 204
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	826, 899
TaqI	TCGA	4 cut(s)	1012, 1021, 1030, 1198
TaqII	GACCGA	1 cut(s)	50
TauI	GCSGC	2 cut(s)	500, 944
TfiI	GAWTC	4 cut(s)	148, 556, 749, 866
Tru1I	TTAA	6 cut(s)	162, 525, 587, 828, 1254, 1294
Tru9I	TTAA	6 cut(s)	162, 525, 587, 828, 1254, 1294
TscAI	CASTG	3 cut(s)	365, 699, 1209
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	6 cut(s)	5, 308, 332, 335, 758, 791
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	7 cut(s)	417, 723, 762, 978, 1143, 1152, 1220
TspRI	CASTG	3 cut(s)	365, 699, 1209
XapI	RAATTY	3 cut(s)	212, 985, 1051
XbaI	TCTAGA	1 cut(s)	1246
XceI	RCATGY	1 cut(s)	765
XhoI	CTCGAG	1 cut(s)	1197
XspI	CTAG	1 cut(s)	1247
Zsp2I	ATGCAT	2 cut(s)	49, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.