Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009938

Physical Location & Seq

Genomic Coordinates Reverse (-)

19095932 .. 19100568

Gene Structure 4637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19040.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGACCCGGAATCCTATTTTTGTTAATTCTGATTCATCAGCTCTTGAAGCTCTTCAGAAAATGATCCAAGGTAAATTCAGACACCTCCCTGTCGTAGAGAGTGGTGAAGTTATTGCCTTGTTAGATATCACAAAATGCCTCTATGATGCTATATCAAGATTGGAGAAAGCAGCAGAGCAGGGGAGTGCCATTGCTGCTGCAGTTGAAGGAGTTGAACGCCAGATGGGAGCCAATTTTTCTGCTCCATATGCTTTTCTAGAAACTTTGAGGGATCGAATGTTCAAGCCATCCTTGTCAACCATCATTGGTGAAAATACGAAGGTTGCCATTGTTTCCCCATCTGATCCTGTCTATGTTGCAGCAAAAAGGATGCGGGAGTTGCGGGTTAATTCAGTTATAATTGTAATGGGCAACAAGATTCAGGGGATACTAACTTCCAAGGATATCCTTATGCGAGTTGTGGCGCAAAATCTCTCTCCTGAGTTGACTTTGGTGGAAAAGGTAATGACTTCAAACCCTGAGTGTGCTACGGTAGAGACAACAATCCTTGATGCACTGCATATAATGCATGAAGGGAAGTTCTTACATCTTCCTGTCTTAGACAGAGATGGATGCGTTGCTGCCTGTGTGGATGTTCTGCAGATAACTCATGCGGCAATTTCTATGGTTGAAAATAGCTCAGGAACTGTTAATGATATGGCAAACACAATGATGCAAAAATTCTGGGATTCAGCACTTGCTTTGGAGCCACCTGATGATTGCGATACTCAAAGTGAAATGTCTGCACTGATGGCATCTGATGGGGCAGATGGAAAGTTTTCTTATCCTTCTCTTGGTCTTGGAAATTCATTTGCCTTCAAATTTGAAGATCTTAGGGGTCGAGTGCATCGAATTAATTGTGGCATGGAAAATTTAGATGAGCTGGTATCTGCTATCATGAAAAGGATTGGTGCTGCTAATGATCACGATCGTCCTCACATTTTGTTTGAAGACGAAGATGGTGACAGAGTTCTACTTGCAACTGATGATGATCTTATTAGCGCTGTCAGCCATGCTCGAGGAGTGGGACTGAAGGTTCTAAGGTTGCATCTGGACTTCTCTGATTCTGGCCACCCAAGCATATCACAGCCAGGAACAACAATGACCCAAAAAAGCAGATGGACGTCCGTGCAAACCGGAGTTCTTGCAAGTGCTGTTGCGTTAACTGGCGTTGGGGTGCTGGTCTATTTGAAGCGCACGAACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

416

Amino Acids

45.1

Weight (kDa)

5.34

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52950 AT3G52950
fragaria_vesca	FvH4_1g25510 FvH4_1g25510
malus_domestica	MD08G1219400.v1.1 MD15G1408000.v1.1
prunus_persica	Prupe.1G553500_v2.0.a1
pyrus_communis	pycom08g19040 pycom15g36410
rosa_chinensis	RchiOBHm_Chr2g0123641
rosa_laevigata	RLG00000018765
rosa_multiflora	Rmu_co8197906.1_g000001 Rmu_sc0004915.1_g000016
rosa_roxburghii	Rroxscaffold_2G00120490
rosa_rugosa	Rorug02G0246700 Rorug02G0246800
rosa_samantha	Rh2AG305900 Rh2BG313900 Rh2CG292200 Rh2DG329700
rosa_wichuraiana	Rw2G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AatII	GACGTC	1 cut(s)	1166
AciI	CCGC	3 cut(s)	373, 382, 653
AclWI	GGATC	3 cut(s)	58, 279, 338
AcoI	YGGCCR	1 cut(s)	1108
AcsI	RAATTY	5 cut(s)	74, 719, 844, 860, 910
AcuI	CTGAAG	2 cut(s)	38, 1091
AcyI	GRCGYC	1 cut(s)	1163
AfeI	AGCGCT	1 cut(s)	1042
AfiI	CCNNNNNNNGG	1 cut(s)	833
AjnI	CCWGG	1 cut(s)	1129
AloI	GAACNNNNNNTCC	4 cut(s)	263, 295, 1059, 1091
AluBI	AGCT	4 cut(s)	41, 50, 678, 922
AluI	AGCT	4 cut(s)	41, 50, 678, 922
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	58, 279, 338
AlwNI	CAGNNNCTG	1 cut(s)	686
Ama87I	CYCGRG	1 cut(s)	1056
Aor51HI	AGCGCT	1 cut(s)	1042
AoxI	GGCC	1 cut(s)	1108
ApeKI	GCWGC	6 cut(s)	170, 194, 197, 359, 620, 953
ApoI	RAATTY	5 cut(s)	74, 719, 844, 860, 910
AseI	ATTAAT	1 cut(s)	894
Asp700I	GAANNNNTTC	2 cut(s)	51, 817
AspLEI	GCGC	3 cut(s)	466, 1043, 1236
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	116, 320, 1013
AvaI	CYCGRG	1 cut(s)	1056
BalI	TGGCCA	1 cut(s)	1110
BbsI	GAAGAC	1 cut(s)	996
BbvI	GCAGC	6 cut(s)	181, 182, 184, 371, 607, 940
BciT130I	CCWGG	1 cut(s)	1131
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	961
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	198, 638
BfoI	RGCGCY	1 cut(s)	1044
BfuI	GTATCC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	7 cut(s)	171, 195, 198, 360, 621, 654, 954
BlsI	GCNGC	7 cut(s)	172, 196, 199, 361, 622, 655, 955
Bme1390I	CCNGG	2 cut(s)	7, 1131
BmeT110I	CYCGRG	1 cut(s)	1056
BmiI	GGNNCC	2 cut(s)	229, 747
BmrFI	CCNGG	2 cut(s)	7, 1131
BmsI	GCATC	8 cut(s)	136, 360, 541, 602, 702, 803, 895, 1096
BpiI	GAAGAC	1 cut(s)	996
Bpu10I	CCTNAGC	1 cut(s)	679
BpuMI	CCSGG	1 cut(s)	7
BsaBI	GATNNNNATC	2 cut(s)	966, 1029
BsaHI	GRCGYC	1 cut(s)	1163
BsaJI	CCNNGG	2 cut(s)	67, 438
BsaWI	WCCGGW	1 cut(s)	1175
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	1 cut(s)	1210
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	2 cut(s)	966, 1029
BseBI	CCWGG	1 cut(s)	1131
BseDI	CCNNGG	2 cut(s)	67, 438
BseGI	GGATG	4 cut(s)	287, 375, 617, 637
BseJI	GATNNNNATC	2 cut(s)	966, 1029
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	471, 510, 693
BseNI	ACTGG	1 cut(s)	1210
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	6 cut(s)	181, 182, 184, 371, 607, 940
BsgI	GTGCAG	1 cut(s)	768
Bsh1285I	CGRYCG	1 cut(s)	970
BshFI	GGCC	1 cut(s)	1110
BsiEI	CGRYCG	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	1056
BsiSI	CCGG	2 cut(s)	7, 1176
BslFI	GGGAC	1 cut(s)	1080
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	1080
BsnI	GGCC	1 cut(s)	1110
BsoBI	CYCGRG	1 cut(s)	1056
Bsp143I	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
BspACI	CCGC	3 cut(s)	373, 382, 653
BspANI	GGCC	1 cut(s)	1110
BspCNI	CTCAG	3 cut(s)	472, 511, 692
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	229, 747
BspMAI	CTGCAG	2 cut(s)	202, 642
BspPI	GGATC	3 cut(s)	58, 279, 338
BspQI	GCTCTTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	1210
BssECI	CCNNGG	2 cut(s)	67, 438
BssMI	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
BssNI	GRCGYC	1 cut(s)	1163
BssT1I	CCWWGG	2 cut(s)	67, 438
Bst2UI	CCWGG	1 cut(s)	1131
Bst4CI	ACNGT	2 cut(s)	532, 688
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	1163
BstAPI	GCANNNNNTGC	1 cut(s)	565
BstDEI	CTNAG	6 cut(s)	480, 519, 598, 679, 872, 1079
BstF5I	GGATG	4 cut(s)	287, 375, 617, 637
BstH2I	RGCGCY	1 cut(s)	1044
BstHHI	GCGC	3 cut(s)	466, 1043, 1236
BstKTI	GATC	7 cut(s)	66, 274, 346, 871, 964, 970, 1033
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
BstMCI	CGRYCG	1 cut(s)	970
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 194, 248, 379, 565, 791, 1047, 1116
BstNI	CCWGG	1 cut(s)	1131
BstSCI	CCNGG	2 cut(s)	5, 1129
BstSFI	CTRYAG	2 cut(s)	198, 638
BstV1I	GCAGC	6 cut(s)	181, 182, 184, 371, 607, 940
BstV2I	GAAGAC	1 cut(s)	996
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	1110
BtsCI	GGATG	4 cut(s)	287, 375, 617, 637
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	554, 785
CaiI	CAGNNNCTG	1 cut(s)	686
CciI	TCATGA	1 cut(s)	936
CfoI	GCGC	3 cut(s)	466, 1043, 1236
CviAII	CATG	5 cut(s)	569, 650, 904, 937, 1052
DdeI	CTNAG	6 cut(s)	480, 519, 598, 679, 872, 1079
DpnI	GATC	7 cut(s)	65, 273, 345, 870, 963, 969, 1032
DpnII	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
EaeI	YGGCCR	1 cut(s)	1108
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	67, 438
Eco32I	GATATC	2 cut(s)	127, 445
Eco47III	AGCGCT	1 cut(s)	1042
Eco57I	CTGAAG	2 cut(s)	38, 1091
Eco88I	CYCGRG	1 cut(s)	1056
EcoRII	CCWGG	1 cut(s)	1129
EcoRV	GATATC	2 cut(s)	127, 445
EcoT14I	CCWWGG	2 cut(s)	67, 438
EcoT22I	ATGCAT	1 cut(s)	570
ErhI	CCWWGG	2 cut(s)	67, 438
FaeI	CATG	5 cut(s)	572, 653, 907, 940, 1055
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	1080
FatI	CATG	5 cut(s)	568, 649, 903, 936, 1051
FauI	CCCGC	2 cut(s)	366, 375
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	7 cut(s)	171, 195, 198, 360, 621, 654, 954
FokI	GGATG	4 cut(s)	274, 382, 624, 644
Fsp4HI	GCNGC	7 cut(s)	171, 195, 198, 360, 621, 654, 954
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	3 cut(s)	465, 1042, 1235
GluI	GCNGC	7 cut(s)	171, 195, 198, 360, 621, 654, 954
HaeII	RGCGCY	1 cut(s)	1044
HaeIII	GGCC	1 cut(s)	1110
HapII	CCGG	2 cut(s)	7, 1176
HhaI	GCGC	3 cut(s)	466, 1043, 1236
Hin1I	GRCGYC	1 cut(s)	1163
Hin1II	CATG	5 cut(s)	572, 653, 907, 940, 1055
Hin6I	GCGC	3 cut(s)	464, 1041, 1234
HinP1I	GCGC	3 cut(s)	464, 1041, 1234
HincII	GTYRAC	3 cut(s)	297, 486, 1203
HindII	GTYRAC	3 cut(s)	297, 486, 1203
HinfI	GANTC	5 cut(s)	10, 32, 418, 728, 1103
HpaI	GTTAAC	1 cut(s)	1203
HpaII	CCGG	2 cut(s)	7, 1176
HphI	GGTGA	3 cut(s)	116, 320, 1013
Hpy166II	GTNNAC	3 cut(s)	297, 486, 1203
Hpy188I	TCNGA	6 cut(s)	31, 57, 80, 343, 799, 1102
Hpy188III	TCNNGA	8 cut(s)	44, 156, 257, 479, 681, 937, 965, 1091
Hpy8I	GTNNAC	3 cut(s)	297, 486, 1203
HpyAV	CCTTC	6 cut(s)	200, 313, 566, 837, 865, 1066
HpyCH4III	ACNGT	2 cut(s)	532, 688
HpyCH4IV	ACGT	1 cut(s)	1163
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 194, 248, 379, 565, 791, 1047, 1116
HpyF3I	CTNAG	6 cut(s)	480, 519, 598, 679, 872, 1079
HpySE526I	ACGT	1 cut(s)	1163
Hsp92I	GRCGYC	1 cut(s)	1163
Hsp92II	CATG	5 cut(s)	572, 653, 907, 940, 1055
HspAI	GCGC	3 cut(s)	464, 1041, 1234
Ksp22I	TGATCA	1 cut(s)	961
KspAI	GTTAAC	1 cut(s)	1203
Kzo9I	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	227, 247, 745
Lsp1109I	GCAGC	6 cut(s)	181, 182, 184, 371, 607, 940
LweI	GCATC	8 cut(s)	136, 360, 541, 602, 702, 803, 895, 1096
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	1163
MaeIII	GTNAC	1 cut(s)	1001
MalI	GATC	7 cut(s)	65, 273, 345, 870, 963, 969, 1032
MboI	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
MboII	GAAGA	5 cut(s)	44, 581, 878, 1001, 1007
MflI	RGATCY	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	1110
MluNI	TGGCCA	1 cut(s)	1110
MnlI	CCTC	5 cut(s)	95, 149, 261, 984, 1052
Mox20I	TGGCCA	1 cut(s)	1110
Mph1103I	ATGCAT	1 cut(s)	570
MroXI	GAANNNNTTC	2 cut(s)	51, 817
MscI	TGGCCA	1 cut(s)	1110
MseI	TTAA	5 cut(s)	24, 387, 690, 894, 1202
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	1110
MspI	CCGG	2 cut(s)	7, 1176
MspR9I	CCNGG	2 cut(s)	7, 1131
MvaI	CCWGG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	8 cut(s)	47, 194, 248, 379, 565, 791, 1047, 1116
NciI	CCSGG	1 cut(s)	7
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
NlaIII	CATG	5 cut(s)	572, 653, 907, 940, 1055
NlaIV	GGNNCC	2 cut(s)	229, 747
NmuCI	GTSAC	1 cut(s)	1001
NsiI	ATGCAT	1 cut(s)	570
PaeR7I	CTCGAG	1 cut(s)	1056
PagI	TCATGA	1 cut(s)	936
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PdmI	GAANNNNTTC	2 cut(s)	51, 817
PfeI	GAWTC	5 cut(s)	10, 32, 418, 728, 1103
PkrI	GCNGC	7 cut(s)	172, 196, 199, 361, 622, 655, 955
Ple19I	CGATCG	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	1129
PspGI	CCWGG	1 cut(s)	1129
PspN4I	GGNNCC	2 cut(s)	229, 747
PspXI	VCTCGAGB	1 cut(s)	1056
PstI	CTGCAG	2 cut(s)	202, 642
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	868
PvuI	CGATCG	1 cut(s)	970
RseI	CAYNNNNRTG	1 cut(s)	710
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	5 cut(s)	24, 387, 690, 894, 1202
SatI	GCNGC	7 cut(s)	171, 195, 198, 360, 621, 654, 954
Sau3AI	GATC	7 cut(s)	63, 271, 343, 868, 961, 967, 1030
ScrFI	CCNGG	2 cut(s)	7, 1131
SfaNI	GCATC	8 cut(s)	136, 360, 541, 602, 702, 803, 895, 1096
SfcI	CTRYAG	2 cut(s)	198, 638
Sfr274I	CTCGAG	1 cut(s)	1056
SlaI	CTCGAG	1 cut(s)	1056
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	1056
SmoI	CTYRAG	1 cut(s)	1056
SsiI	CCGC	3 cut(s)	373, 382, 653
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	5, 1129
StyI	CCWWGG	2 cut(s)	67, 438
TaaI	ACNGT	2 cut(s)	532, 688
TaiI	ACGT	1 cut(s)	1166
TaqI	TCGA	4 cut(s)	274, 880, 889, 1057
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	5 cut(s)	10, 32, 418, 728, 1103
Tru1I	TTAA	5 cut(s)	24, 387, 690, 894, 1202
Tru9I	TTAA	5 cut(s)	24, 387, 690, 894, 1202
TscAI	CASTG	2 cut(s)	561, 792
TseFI	GTSAC	1 cut(s)	1001
TseI	GCWGC	6 cut(s)	170, 194, 197, 359, 620, 953
Tsp45I	GTSAC	1 cut(s)	1001
TspDTI	ATGAA	4 cut(s)	24, 585, 837, 953
TspGWI	ACGGA	1 cut(s)	1156
TspRI	CASTG	2 cut(s)	561, 792
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	5 cut(s)	74, 719, 844, 860, 910
XbaI	TCTAGA	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	1056
XmnI	GAANNNNTTC	2 cut(s)	51, 817
XspI	CTAG	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	1164
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.