Rorug02G0246800

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009938
Physical Location & Seq
Forward (+)
25693734 .. 25694243
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0246800.1

Sequence Viewer

Length: 510 bp
ATGAACATGGAAATCTCCTTCCAAATCATCAATCCTAAGCTAGCAACTATGGTTCCAATGCCATCTAACCAGAAAGCCTATATTTCATGCAGAGCTCATGATGGGTTCGCCATGCACAAAAAGAACAAGGCCAGCAACTTTTATGAGCTGCTTTCACTTGGTTCTGAGAATAACAATAAGGTAGGCTTGCATGAGATAAAGAAAGCCTACAGAAACATGGCCCTTCAGTTCCACCCTGATGTTGTCCCTCCCTCTGCAAAAGAGGAGTCTACAAGACGATTCATCGAGCTTCAAAAGGCATATGAAACCCTTTCAGACCCGGTTTCGCGTCAAATATACGATTACCAGTTGTGTTTGGGGAGCTCATCGGTAGGGTTGGGAGTGGAGGGATTATGTATGGATCAGGTGAAGAGATCCGTGTTCAGCAAGGAGGTGTGGGAAGAACAACTTCGGGGATTGCATAATAAGTCTCAAACTCGATCGGGGAGGAAAAGCTACAGGCCGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS PB1

Protein Analysis

169

Amino Acids

19.32

Weight (kDa)

9.36

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 46 - 114 1.5e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 328
AclWI GGATC 2 cut(s) 408, 408
AcuI CTGAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 6 cut(s) 40, 95, 148, 289, 363, 495
AluI AGCT 6 cut(s) 40, 95, 148, 289, 363, 495
Alw21I GWGCWC 2 cut(s) 97, 365
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 408, 408
AoxI GGCC 3 cut(s) 129, 219, 500
ApeKI GCWGC 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 418
AsuNHI GCTAGC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 97, 365
Bbv12I GWGCWC 2 cut(s) 97, 365
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 70, 95
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 208, 496
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 320
BmtI GCTAGC 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 482
BshFI GGCC 3 cut(s) 131, 221, 502
BsiEI CGRYCG 1 cut(s) 482
BsiHKAI GWGCWC 2 cut(s) 97, 365
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 3 cut(s) 131, 221, 502
Bsp1286I GDGCHC 2 cut(s) 97, 365
Bsp143I GATC 3 cut(s) 400, 413, 479
BspANI GGCC 3 cut(s) 131, 221, 502
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 328
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 54
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 2 cut(s) 408, 408
BsrI ACTGG 1 cut(s) 346
BssMI GATC 3 cut(s) 400, 413, 479
Bst6I CTCTTC 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 42, 133, 188
BstDEI CTNAG 2 cut(s) 36, 165
BstFNI CGCG 1 cut(s) 328
BstKTI GATC 3 cut(s) 403, 416, 482
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 3 cut(s) 400, 413, 479
BstMCI CGRYCG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 2 cut(s) 208, 496
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BsuRI GGCC 3 cut(s) 131, 221, 502
Cac8I GCNNGC 3 cut(s) 42, 133, 188
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 317
CviAII CATG 6 cut(s) 7, 87, 98, 112, 191, 217
DdeI CTNAG 2 cut(s) 36, 165
DpnI GATC 3 cut(s) 402, 415, 481
DpnII GATC 3 cut(s) 400, 413, 479
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 2 cut(s) 95, 363
Eco24I GRGCYC 2 cut(s) 97, 365
Eco53kI GAGCTC 2 cut(s) 95, 363
Eco57I CTGAAG 1 cut(s) 209
EcoICRI GAGCTC 2 cut(s) 95, 363
EcoT38I GRGCYC 2 cut(s) 97, 365
FaeI CATG 6 cut(s) 10, 90, 101, 115, 194, 220
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 432, 464
FaqI GGGAC 1 cut(s) 230
FatI CATG 6 cut(s) 6, 86, 97, 111, 190, 216
FauNDI CATATG 1 cut(s) 301
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 149
FriOI GRGCYC 2 cut(s) 97, 365
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 3 cut(s) 131, 221, 502
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 317
Hin1II CATG 6 cut(s) 10, 90, 101, 115, 194, 220
HinfI GANTC 2 cut(s) 266, 279
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 166, 316
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 28, 233
HpyCH4V TGCA 5 cut(s) 90, 115, 190, 257, 460
HpyF3I CTNAG 2 cut(s) 36, 165
Hsp92II CATG 6 cut(s) 10, 90, 101, 115, 194, 220
Kzo9I GATC 3 cut(s) 400, 413, 479
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 7 cut(s) 83, 145, 249, 333, 359, 389, 484
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 41
MalI GATC 3 cut(s) 402, 415, 481
MboI GATC 3 cut(s) 400, 413, 479
MboII GAAGA 2 cut(s) 421, 452
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 2 cut(s) 97, 365
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 6 cut(s) 256, 258, 262, 379, 424, 480
MroXI GAANNNNTTC 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 328
NciI CCSGG 1 cut(s) 320
NdeI CATATG 1 cut(s) 301
NdeII GATC 3 cut(s) 400, 413, 479
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 6 cut(s) 10, 90, 101, 115, 194, 220
NlaIV GGNNCC 1 cut(s) 54
PagI TCATGA 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 150
Ple19I CGATCG 1 cut(s) 482
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp124BI GAGCTC 2 cut(s) 97, 365
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 413
PvuI CGATCG 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 2 cut(s) 97, 365
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 400, 413, 479
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 2 cut(s) 97, 365
SetI ASST 9 cut(s) 42, 97, 150, 183, 291, 365, 408, 435, 497
SfcI CTRYAG 2 cut(s) 208, 496
SmiMI CAYNNNNRTG 1 cut(s) 237
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 2 cut(s) 97, 365
StyD4I CCNGG 1 cut(s) 318
TaqI TCGA 2 cut(s) 285, 478
TfiI GAWTC 1 cut(s) 279
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 4 cut(s) 17, 75, 271, 318
TspGWI ACGGA 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.