Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009938

Physical Location & Seq

Genomic Coordinates Reverse (-)

36423649 .. 36427699

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAACCTCTAATGGCACCACCAGCAAACCCTCCTCTCCTCCTCCCCTTTCGTAAGTCTGGTGGTGGGGAGAGGACGGTGAAGAAGCTACGGTTGTCGAAAGCCCTAACTATTCCCGAGGGGACGACAGTATCCGATGCATGTCGGAGAATGGCGGCTCGCCGTGTGGATGCTGTGCTCTTAACCGATTCAAATGCGTTGCTTTCCGGAATTGTGACAGACAAGGACATTTCCGCTAGAGTCATCGCCGAGGGGTTGAGACCGGAGCAGACAATTGTGTCAAAGATCATGACGCGGAATCCTATTTTTGTTAATTCTGATTCATCTGCTCTCGAAGCTCTTCAGAAGATGATCCAAGGTAAATTCAGACACCTCCCTGTCGTAGAGAGTGGTGAAGTTATTGCCTTGTTAGATATCACAAAATGTCTCTACGATGCTATATCAAGATTGGAGAAGGCAGCGGAGCAGGGGAGTGCCATTGCTGCTGCAGTTGAAGGAGTTGAACGCCAGATGGGAGGCAATTTTTCTGCTCCATATGCTTTTCTAGAAACCTTGAGGGATCGAATGTTCAAGCCTTCCTTGTCAACCATCATTGGTGAAAATACGAAGGTTGCTGTTGTTTCTCCATCGGATCCTGTCTATGTTGCAGCAAAAAGGATGCGGGAGTTTCGGGTTAATTCAGTCATAATTATAACGGGCAACAAGATTCAGGGGATACTAACTTCCAAGGATATCCTTATGCGAGTTGTGGCGCAAAATGTCTCTCCTGAGTTGACTCTGGTGGAAAAGGTAATGACTCCAAACCCTGAGTGTGCCTCGTTAGAGACAACGATCCTTGATGCGCTGCATATAATGCATGAAGGGAAGTTCTTACATCTTCCTGTCTTAGACAGAGATGGATGCATTGCTGCTTGCTTGGATGTTCTGCAGATAACTCATGCGGCAGTTTCTATGGTTGAAAGTAGCTCAGGAACGGTTAATGATATGGCAAACACAATGATGCAAAAATTCTGGGATTCAGCACTTGCTTTGGAGCCACCTGATGATTGTGATACTCAAAGTGAATTGTCTACAGTGATGGCTTCTGATGGGGCTGATGGAAAGTTTTCTTATCCTTCTCTTGGTCTTGGAGATTCATTTGCCTTCAAATTTGAAGATCTTAGGGGTCGAGTGCATCGAATTAATTGTGGCATGGAAAATTTAGATGAGCTGGTATTTGCTATCATGAAAAGAATCCATGTGGCTGATGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

419

Amino Acids

45.51

Weight (kDa)

5.61

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52950 AT3G52950
fragaria_vesca	FvH4_1g25510 FvH4_1g25510
malus_domestica	MD08G1219400.v1.1 MD15G1408000.v1.1
prunus_persica	Prupe.1G553500_v2.0.a1
pyrus_communis	pycom08g19040 pycom15g36410
rosa_chinensis	RchiOBHm_Chr2g0123641
rosa_laevigata	RLG00000018765
rosa_multiflora	Rmu_co8197906.1_g000001 Rmu_sc0004915.1_g000016
rosa_roxburghii	Rroxscaffold_2G00120490
rosa_rugosa	Rorug02G0246700 Rorug02G0246800
rosa_samantha	Rh2AG305900 Rh2BG313900 Rh2CG292200 Rh2DG329700
rosa_wichuraiana	Rw2G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AasI	GACNNNNNNGTC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	1070
AccII	CGCG	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	206
AciI	CCGC	6 cut(s)	155, 234, 295, 461, 661, 941
AclWI	GGATC	5 cut(s)	346, 567, 626, 639, 826
AcsI	RAATTY	4 cut(s)	362, 1007, 1148, 1198
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	1121
AgsI	TTSAA	7 cut(s)	192, 494, 503, 571, 959, 1147, 1154
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	4 cut(s)	88, 338, 966, 1210
AluI	AGCT	4 cut(s)	88, 338, 966, 1210
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	4 cut(s)	253, 431, 766, 818
AlwI	GGATC	5 cut(s)	346, 567, 626, 639, 826
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	206
ApeKI	GCWGC	6 cut(s)	458, 482, 485, 647, 844, 908
ApoI	RAATTY	4 cut(s)	362, 1007, 1148, 1198
AseI	ATTAAT	1 cut(s)	1182
Asp700I	GAANNNNTTC	2 cut(s)	339, 1105
AspLEI	GCGC	2 cut(s)	754, 844
AsuHPI	GGTGA	3 cut(s)	91, 404, 608
AvaI	CYCGRG	1 cut(s)	116
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	6 cut(s)	469, 470, 472, 659, 831, 895
BccI	CCATC	7 cut(s)	505, 596, 634, 890, 1072, 1082, 1091
BceAI	ACGGC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciVI	GTATCC	2 cut(s)	142, 708
BclI	TGATCA	1 cut(s)	1249
BcoDI	GTCTC	4 cut(s)	253, 431, 766, 818
BfaI	CTAG	2 cut(s)	237, 545
BfmI	CTRYAG	3 cut(s)	486, 926, 1071
BfuI	GTATCC	2 cut(s)	142, 708
BglII	AGATCT	1 cut(s)	1156
BisI	GCNGC	8 cut(s)	156, 459, 483, 486, 648, 845, 909, 942
BlsI	GCNGC	8 cut(s)	157, 460, 484, 487, 649, 846, 910, 943
BmeT110I	CYCGRG	1 cut(s)	116
BmiI	GGNNCC	4 cut(s)	6, 18, 633, 1035
BmsI	GCATC	8 cut(s)	127, 160, 424, 648, 829, 890, 990, 1183
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
Bpu10I	CCTNAGC	1 cut(s)	967
BpuEI	CTTGAG	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	4 cut(s)	117, 249, 355, 726
BsaWI	WCCGGW	2 cut(s)	206, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	1121
Bse3DI	GCAATG	2 cut(s)	477, 903
BseAI	TCCGGA	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	117, 249, 355, 726
BseGI	GGATG	4 cut(s)	175, 663, 905, 925
BseLI	CCNNNNNNNGG	1 cut(s)	1121
BseMI	GCAATG	2 cut(s)	477, 903
BseMII	CTCAG	3 cut(s)	759, 798, 981
BseRI	GAGGAG	3 cut(s)	24, 29, 32
BseXI	GCAGC	6 cut(s)	469, 470, 472, 659, 831, 895
Bsh1236I	CGCG	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	207, 263
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	1121
BsmAI	GTCTC	4 cut(s)	253, 431, 766, 818
BsmFI	GGGAC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
BspACI	CCGC	6 cut(s)	155, 234, 295, 461, 661, 941
BspCNI	CTCAG	3 cut(s)	760, 799, 980
BspEI	TCCGGA	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	2 cut(s)	288, 1224
BspLI	GGNNCC	4 cut(s)	6, 18, 633, 1035
BspMAI	CTGCAG	2 cut(s)	490, 930
BspPI	GGATC	5 cut(s)	346, 567, 626, 639, 826
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	477, 903
BssECI	CCNNGG	4 cut(s)	117, 249, 355, 726
BssMI	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
BssT1I	CCWWGG	2 cut(s)	355, 726
Bst4CI	ACNGT	5 cut(s)	79, 93, 130, 976, 1075
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	160, 913
BstDEI	CTNAG	5 cut(s)	768, 807, 886, 967, 1160
BstF5I	GGATG	4 cut(s)	175, 663, 905, 925
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	754, 844
BstKTI	GATC	7 cut(s)	288, 354, 562, 634, 834, 1159, 1252
BstMAI	GTCTC	4 cut(s)	253, 431, 766, 818
BstMBI	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 335, 482, 536, 853
BstNSI	RCATGY	1 cut(s)	144
BstSFI	CTRYAG	3 cut(s)	486, 926, 1071
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	6 cut(s)	469, 470, 472, 659, 831, 895
BstX2I	RGATCY	2 cut(s)	631, 1156
BstYI	RGATCY	2 cut(s)	631, 1156
BsuI	GTATCC	2 cut(s)	142, 708
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	175, 663, 905, 925
BtsIMutI	CAGTG	1 cut(s)	1080
Cac8I	GCNNGC	2 cut(s)	160, 913
CciI	TCATGA	2 cut(s)	288, 1224
CfoI	GCGC	2 cut(s)	754, 844
CseI	GACGC	1 cut(s)	301
CviAII	CATG	7 cut(s)	141, 289, 857, 938, 1192, 1225, 1238
DdeI	CTNAG	5 cut(s)	768, 807, 886, 967, 1160
DpnI	GATC	7 cut(s)	287, 353, 561, 633, 833, 1158, 1251
DpnII	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	355, 726
Eco31I	GGTCTC	1 cut(s)	253
Eco32I	GATATC	2 cut(s)	415, 733
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	116
EcoRV	GATATC	2 cut(s)	415, 733
EcoT14I	CCWWGG	2 cut(s)	355, 726
EcoT22I	ATGCAT	3 cut(s)	142, 858, 905
ErhI	CCWWGG	2 cut(s)	355, 726
FaeI	CATG	7 cut(s)	144, 292, 860, 941, 1195, 1228, 1241
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	7 cut(s)	140, 288, 856, 937, 1191, 1224, 1237
FauI	CCCGC	1 cut(s)	654
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	1249
FblI	GTMKAC	1 cut(s)	1070
Fnu4HI	GCNGC	8 cut(s)	156, 459, 483, 486, 648, 845, 909, 942
FokI	GGATG	4 cut(s)	182, 670, 912, 932
Fsp4HI	GCNGC	8 cut(s)	156, 459, 483, 486, 648, 845, 909, 942
FspBI	CTAG	2 cut(s)	237, 545
GlaI	GCGC	2 cut(s)	753, 843
GluI	GCNGC	8 cut(s)	156, 459, 483, 486, 648, 845, 909, 942
HapII	CCGG	2 cut(s)	207, 263
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	754, 844
Hin1II	CATG	7 cut(s)	144, 292, 860, 941, 1195, 1228, 1241
Hin6I	GCGC	2 cut(s)	752, 842
HinP1I	GCGC	2 cut(s)	752, 842
HincII	GTYRAC	2 cut(s)	585, 774
HindII	GTYRAC	2 cut(s)	585, 774
HpaII	CCGG	2 cut(s)	207, 263
HphI	GGTGA	3 cut(s)	91, 404, 608
Hpy166II	GTNNAC	3 cut(s)	585, 774, 1071
Hpy188I	TCNGA	7 cut(s)	136, 147, 319, 345, 368, 631, 1087
Hpy188III	TCNNGA	9 cut(s)	116, 207, 289, 332, 444, 545, 767, 969, 1225
Hpy8I	GTNNAC	3 cut(s)	585, 774, 1071
HpyAV	CCTTC	7 cut(s)	448, 488, 585, 601, 854, 1125, 1153
HpyCH4III	ACNGT	5 cut(s)	79, 93, 130, 976, 1075
HpyCH4V	TGCA	9 cut(s)	140, 488, 647, 847, 856, 903, 928, 1003, 1174
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 335, 482, 536, 853
HpyF3I	CTNAG	5 cut(s)	768, 807, 886, 967, 1160
Hsp92II	CATG	7 cut(s)	144, 292, 860, 941, 1195, 1228, 1241
HspAI	GCGC	2 cut(s)	752, 842
Kpn2I	TCCGGA	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	1249
Kzo9I	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	4 cut(s)	265, 463, 535, 1033
Lsp1109I	GCAGC	6 cut(s)	469, 470, 472, 659, 831, 895
LweI	GCATC	8 cut(s)	127, 160, 424, 648, 829, 890, 990, 1183
MaeI	CTAG	2 cut(s)	237, 545
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	7 cut(s)	287, 353, 561, 633, 833, 1158, 1251
MboI	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
MboII	GAAGA	5 cut(s)	94, 332, 358, 869, 1166
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	631, 1156
MhlI	GDGCHC	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	249, 769, 790
MmeI	TCCRAC	1 cut(s)	125
Mph1103I	ATGCAT	3 cut(s)	142, 858, 905
MroI	TCCGGA	1 cut(s)	206
MroXI	GAANNNNTTC	2 cut(s)	339, 1105
MseI	TTAA	5 cut(s)	182, 312, 675, 978, 1182
MslI	CAYNNNNRTG	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	207, 263
MunI	CAATTG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	5 cut(s)	23, 335, 482, 536, 853
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
NlaIII	CATG	7 cut(s)	144, 292, 860, 941, 1195, 1228, 1241
NlaIV	GGNNCC	4 cut(s)	6, 18, 633, 1035
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	3 cut(s)	142, 858, 905
NspI	RCATGY	1 cut(s)	144
PagI	TCATGA	2 cut(s)	288, 1224
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	1174
PdmI	GAANNNNTTC	2 cut(s)	339, 1105
PfeI	GAWTC	7 cut(s)	188, 298, 320, 706, 1016, 1133, 1233
PkrI	GCNGC	8 cut(s)	157, 460, 484, 487, 649, 846, 910, 943
PleI	GAGTC	3 cut(s)	248, 769, 790
PpsI	GAGTC	3 cut(s)	248, 769, 790
PshBI	ATTAAT	1 cut(s)	1182
PsiI	TTATAA	1 cut(s)	692
PspN4I	GGNNCC	4 cut(s)	6, 18, 633, 1035
PstI	CTGCAG	2 cut(s)	490, 930
PsuI	RGATCY	2 cut(s)	631, 1156
RseI	CAYNNNNRTG	1 cut(s)	998
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	182, 312, 675, 978, 1182
SatI	GCNGC	8 cut(s)	156, 459, 483, 486, 648, 845, 909, 942
Sau3AI	GATC	7 cut(s)	285, 351, 559, 631, 831, 1156, 1249
SchI	GAGTC	3 cut(s)	249, 769, 790
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	8 cut(s)	127, 160, 424, 648, 829, 890, 990, 1183
SfcI	CTRYAG	3 cut(s)	486, 926, 1071
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SsiI	CCGC	6 cut(s)	155, 234, 295, 461, 661, 941
SspMI	CTAG	2 cut(s)	237, 545
StyI	CCWWGG	2 cut(s)	355, 726
TaaI	ACNGT	5 cut(s)	79, 93, 130, 976, 1075
TaqI	TCGA	5 cut(s)	98, 333, 562, 1168, 1177
TauI	GCSGC	2 cut(s)	158, 944
TfiI	GAWTC	7 cut(s)	188, 298, 320, 706, 1016, 1133, 1233
Tru1I	TTAA	5 cut(s)	182, 312, 675, 978, 1182
Tru9I	TTAA	5 cut(s)	182, 312, 675, 978, 1182
TscAI	CASTG	1 cut(s)	1080
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	6 cut(s)	458, 482, 485, 647, 844, 908
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	312, 873, 1125, 1241
TspRI	CASTG	1 cut(s)	1080
VspI	ATTAAT	1 cut(s)	1182
XapI	RAATTY	4 cut(s)	362, 1007, 1148, 1198
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	1070
XmnI	GAANNNNTTC	2 cut(s)	339, 1105
XspI	CTAG	2 cut(s)	237, 545
Zsp2I	ATGCAT	3 cut(s)	142, 858, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.