Rh2DG329700

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
41805845 .. 41814435
8591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG329700.1

Sequence Viewer

Length: 1497 bp
ATGAGCAGCCAAGTTGGTCTGAGGAGGACCAGTCTCACCCAGAAGCGCGGCCCCTCCACCGTCACTAAGAAATCGGTCCCAAGCGAGAACGGAGCCATCTCTAATGGCACCACCAGCAAACCCTCGTCTCCTCCTGCCCTTGCGACTGCTGGTGGAGAGAGGACAGTGAAGAAGCTGAGGTTGTCGAAAGCCCTCACAATCCCCGAGGGGACCACTGTATCCGATGCTTGCCGGAGGATGGCTGCTCGGCGTGTGGATGCTGTGCTTTTGACTGATGCAAATGCATTGCTTTCTGGAATTGTGACTGACAAGGACATTGCCAGTAGGGTCATTGCAGAGGGATTGAGACCGGAGCAGACAATTGTATCAAAGATCATGACGCGGAATCCTATTTTTGTTAATGCTGACTCATTGGCCATGGAAGCTCTACAGAAGATGATCCAGGGTAAATTTAGGCACCTTCCTGTTGTAGAGAATGGTGAGGTTATTGCCTTGTTGGATATCACAAAATGCCTCTATGATGCTATATCAAGAATGGAAAAGGCAGCTGAGCAGGGGAGTGCCATTGCTGCTGCAGTTGAAGGAGTTGAACGCCAGTGGGGAGCCAATTTTTCTGCTCCATATGCTTTTCTGGAAACTCTGAGGGAGCGAATGTTCAAGCCTTCATTGTCAACCATCATTGGTGAAAACACAAAGGTTGCAATTGTATCCCCATCAGATCCTGTCTATGTTGCGGCAAAAAGGATGCGGGACTTTCGGGTTAATTCAGTTATAATTGTCATGGGGAACAAGATTCAAGGGATACTCACTTCAAAGGATATTTTAATGCGAGTCGTGGCACAAAATCTTTCTCCTGAGTTGACTCTGGTGGAAAAGGTAATGACGCCGAACCCTGAATGTGCTACATTAGAGACTACAATTCTTGATGCACTGCATATAATGCATGAAGGGAAGTTCTTGCATCTTCCTGTCTTAGACAGAGCAGATGAATCTGTTGCTGCATGTGTGGATGTTCTGCAGATAACTCACGCGGCAATCTCTATGGTTGAAAGTAGTTCAGGAAGCGTTAATGATATGGCAAACACAATGATGCAAAAGTTCTGGGATTCAGCACTTGCTTTAGAGCCGGCTGATGACTGTGATACTCAAAGTGAAATGTCTGCACTAATGGCTTCTGATGCGGCAGAACAAGCCAAGTTTACTTATCCTTCTATTGGTCTTGGAAATTCATTCGCCTTCAAGTTTGAAGATCGAAAAGGTCGAGTGCATCGACTCAATAGTGGCACAGAAAATTTAGATGAGCTTGTATCTGCTGTCATGCGAAGGACTGGTGGTGCTAAGGATAATGATCGTCCTCAGATTTTGTATGAAGATGATGAAGGTGATAGAGTTCTACTTGCAAGTGATGATGATCTTGTTAGCGCTGTCAGCCATGCTCGAGCAGTGGGACAGAAGGTAGTGTTTATGCTTCATATATTATTTTTTTCTAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

54.01

Weight (kDa)

6.14

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 62 - 110 3.3e-07 CBS domain
CBS PF00571 122 - 168 2.7e-09 CBS domain
CBS PF00571 230 - 278 8.7e-07 CBS domain
PB1 PF00564 411 - 490 1.1e-12 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 773
AccB1I GGYRCC 2 cut(s) 107, 456
AccII CGCG 3 cut(s) 48, 382, 1031
AciI CCGC 6 cut(s) 48, 382, 734, 748, 1031, 1181
AclWI GGATC 2 cut(s) 433, 713
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 3 cut(s) 449, 1225, 1291
AcyI GRCGYC 1 cut(s) 884
AfeI AGCGCT 1 cut(s) 1423
AfiI CCNNNNNNNGG 2 cut(s) 238, 1214
AgsI TTSAA 8 cut(s) 581, 590, 658, 797, 813, 1049, 1240, 1247
AjnI CCWGG 1 cut(s) 441
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
AluBI AGCT 4 cut(s) 175, 425, 548, 1303
AluI AGCT 4 cut(s) 175, 425, 548, 1303
Alw26I GTCTC 4 cut(s) 38, 132, 340, 905
AlwI GGATC 2 cut(s) 433, 713
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 2 cut(s) 203, 1437
Aor51HI AGCGCT 1 cut(s) 1423
AoxI GGCC 2 cut(s) 49, 414
ApeKI GCWGC 6 cut(s) 6, 242, 545, 569, 572, 998
ApoI RAATTY 3 cut(s) 449, 1225, 1291
AspLEI GCGC 2 cut(s) 48, 1424
AspS9I GGNCC 4 cut(s) 27, 50, 76, 210
AsuHPI GGTGA 4 cut(s) 28, 491, 695, 1394
AvaI CYCGRG 2 cut(s) 203, 1437
AvaII GGWCC 3 cut(s) 27, 76, 210
BaeI ACNNNNGTAYC 4 cut(s) 201, 234, 348, 381
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 2 cut(s) 107, 456
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 6 cut(s) 18, 229, 556, 557, 559, 985
BccI CCATC 4 cut(s) 104, 232, 683, 721
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 3 cut(s) 229, 718, 795
BcoDI GTCTC 4 cut(s) 38, 132, 340, 905
BfaI CTAG 1 cut(s) 1488
BfmI CTRYAG 3 cut(s) 428, 573, 1016
BfoI RGCGCY 1 cut(s) 1425
BfuI GTATCC 3 cut(s) 229, 718, 795
BlpI GCTNAGC 1 cut(s) 549
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 3 cut(s) 27, 76, 210
BmeT110I CYCGRG 2 cut(s) 203, 1437
BmgT120I GGNCC 4 cut(s) 27, 50, 76, 210
BmiI GGNNCC 7 cut(s) 52, 78, 94, 109, 211, 458, 604
BmrFI CCNGG 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 176, 1338
Bpu1102I GCTNAGC 1 cut(s) 549
BsaBI GATNNNNATC 2 cut(s) 1347, 1410
BsaHI GRCGYC 1 cut(s) 884
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 3 cut(s) 204, 417, 442
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 1214
Bse118I RCCGGY 1 cut(s) 1126
Bse1I ACTGG 4 cut(s) 30, 321, 595, 1333
Bse3DI GCAATG 4 cut(s) 284, 315, 330, 564
Bse8I GATNNNNATC 2 cut(s) 1347, 1410
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 204, 417, 442
BseGI GGATG 4 cut(s) 243, 262, 750, 1015
BseJI GATNNNNATC 2 cut(s) 1347, 1410
BseLI CCNNNNNNNGG 2 cut(s) 238, 1214
BseMI GCAATG 4 cut(s) 284, 315, 330, 564
BseMII CTCAG 6 cut(s) 11, 167, 540, 632, 846, 1370
BseNI ACTGG 4 cut(s) 30, 321, 595, 1333
BseRI GAGGAG 2 cut(s) 37, 120
BseXI GCAGC 6 cut(s) 18, 229, 556, 557, 559, 985
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 3 cut(s) 48, 382, 1031
BshFI GGCC 2 cut(s) 51, 416
BshNI GGYRCC 2 cut(s) 107, 456
BsiHKCI CYCGRG 2 cut(s) 203, 1437
BsiSI CCGG 3 cut(s) 232, 350, 1127
BslFI GGGAC 4 cut(s) 62, 223, 764, 1461
BslI CCNNNNNNNGG 2 cut(s) 238, 1214
BsmAI GTCTC 4 cut(s) 38, 132, 340, 905
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 4 cut(s) 62, 223, 764, 1461
BsnI GGCC 2 cut(s) 51, 416
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 2 cut(s) 203, 1437
Bsp143I GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 6 cut(s) 48, 382, 734, 748, 1031, 1181
BspANI GGCC 2 cut(s) 51, 416
BspCNI CTCAG 6 cut(s) 12, 168, 541, 633, 847, 1369
BspFNI CGCG 3 cut(s) 48, 382, 1031
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 7 cut(s) 52, 78, 94, 109, 211, 458, 604
BspMAI CTGCAG 2 cut(s) 577, 1020
BspPI GGATC 2 cut(s) 433, 713
BspT107I GGYRCC 2 cut(s) 107, 456
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 4 cut(s) 284, 315, 330, 564
BsrFI RCCGGY 1 cut(s) 1126
BsrI ACTGG 4 cut(s) 30, 321, 595, 1333
BssAI RCCGGY 1 cut(s) 1126
BssECI CCNNGG 3 cut(s) 204, 417, 442
BssMI GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
BssNI GRCGYC 1 cut(s) 884
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 4 cut(s) 61, 166, 217, 1139
BstACI GRCGYC 1 cut(s) 884
BstAPI GCANNNNNTGC 1 cut(s) 940
BstC8I GCNNGC 2 cut(s) 229, 1128
BstDEI CTNAG 9 cut(s) 20, 66, 176, 549, 641, 855, 973, 1338, 1356
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 4 cut(s) 243, 262, 750, 1015
BstFNI CGCG 3 cut(s) 48, 382, 1031
BstH2I RGCGCY 1 cut(s) 1425
BstHHI GCGC 2 cut(s) 48, 1424
BstKTI GATC 6 cut(s) 375, 441, 721, 1252, 1351, 1414
BstMAI GTCTC 4 cut(s) 38, 132, 340, 905
BstMBI GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
BstMWI GCNNNNNNNGC 9 cut(s) 114, 422, 569, 623, 940, 1169, 1178, 1190, 1428
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 1005
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 3 cut(s) 428, 573, 1016
BstUI CGCG 3 cut(s) 48, 382, 1031
BstV1I GCAGC 6 cut(s) 18, 229, 556, 557, 559, 985
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
BsuI GTATCC 3 cut(s) 229, 718, 795
BsuRI GGCC 2 cut(s) 51, 416
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 4 cut(s) 243, 262, 750, 1015
BtsI GCAGTG 2 cut(s) 929, 1449
BtsIMutI CAGTG 5 cut(s) 171, 213, 602, 929, 1449
Cac8I GCNNGC 2 cut(s) 229, 1128
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 1 cut(s) 375
CfoI GCGC 2 cut(s) 48, 1424
Cfr10I RCCGGY 1 cut(s) 1126
Cfr13I GGNCC 4 cut(s) 27, 50, 76, 210
CseI GACGC 2 cut(s) 388, 892
CviAII CATG 7 cut(s) 376, 418, 781, 944, 1002, 1318, 1433
DdeI CTNAG 9 cut(s) 20, 66, 176, 549, 641, 855, 973, 1338, 1356
DpnI GATC 6 cut(s) 374, 440, 720, 1251, 1350, 1413
DpnII GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
EaeI YGGCCR 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 340
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 3 cut(s) 27, 76, 210
Eco47III AGCGCT 1 cut(s) 1423
Eco88I CYCGRG 2 cut(s) 203, 1437
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 2 cut(s) 286, 945
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 7 cut(s) 379, 421, 784, 947, 1005, 1321, 1436
FaqI GGGAC 4 cut(s) 62, 223, 764, 1461
FatI CATG 7 cut(s) 375, 417, 780, 943, 1001, 1317, 1432
FauI CCCGC 1 cut(s) 741
FauNDI CATATG 1 cut(s) 622
FokI GGATG 4 cut(s) 250, 269, 757, 1022
FspBI CTAG 1 cut(s) 1488
GlaI GCGC 2 cut(s) 47, 1423
HaeII RGCGCY 1 cut(s) 1425
HaeIII GGCC 2 cut(s) 51, 416
HapII CCGG 3 cut(s) 232, 350, 1127
HgaI GACGC 2 cut(s) 388, 892
HhaI GCGC 2 cut(s) 48, 1424
Hin1I GRCGYC 1 cut(s) 884
Hin1II CATG 7 cut(s) 379, 421, 784, 947, 1005, 1321, 1436
Hin6I GCGC 2 cut(s) 46, 1422
HinP1I GCGC 2 cut(s) 46, 1422
HincII GTYRAC 2 cut(s) 672, 861
HindII GTYRAC 2 cut(s) 672, 861
HinfI GANTC 8 cut(s) 385, 407, 793, 831, 862, 989, 1106, 1272
HpaII CCGG 3 cut(s) 232, 350, 1127
HphI GGTGA 4 cut(s) 28, 491, 695, 1394
Hpy166II GTNNAC 3 cut(s) 672, 861, 1200
Hpy188I TCNGA 6 cut(s) 21, 223, 642, 718, 1177, 1359
Hpy188III TCNNGA 8 cut(s) 294, 376, 531, 632, 854, 923, 1059, 1488
Hpy8I GTNNAC 3 cut(s) 672, 861, 1200
HpyAV CCTTC 9 cut(s) 470, 575, 672, 941, 1218, 1246, 1317, 1373, 1447
HpyCH4III ACNGT 4 cut(s) 61, 166, 217, 1139
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 422, 569, 623, 940, 1169, 1178, 1190, 1428
HpyF3I CTNAG 9 cut(s) 20, 66, 176, 549, 641, 855, 973, 1338, 1356
Hsp92I GRCGYC 1 cut(s) 884
Hsp92II CATG 7 cut(s) 379, 421, 784, 947, 1005, 1321, 1436
HspAI GCGC 2 cut(s) 46, 1422
KroI GCCGGC 1 cut(s) 1126
KroNI GCCGGC 1 cut(s) 1128
Kzo9I GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
LmnI GCTCC 5 cut(s) 92, 352, 602, 622, 646
Lsp1109I GCAGC 6 cut(s) 18, 229, 556, 557, 559, 985
MaeI CTAG 1 cut(s) 1488
MaeIII GTNAC 2 cut(s) 61, 301
MalI GATC 6 cut(s) 374, 440, 720, 1251, 1350, 1413
MboI GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
MboII GAAGA 5 cut(s) 181, 445, 956, 1259, 1382
MfeI CAATTG 2 cut(s) 360, 702
MflI RGATCY 1 cut(s) 718
MlsI TGGCCA 1 cut(s) 416
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 4 cut(s) 401, 840, 856, 1266
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 416
Mph1103I ATGCAT 2 cut(s) 286, 945
MroNI GCCGGC 1 cut(s) 1126
MscI TGGCCA 1 cut(s) 416
MseI TTAA 5 cut(s) 399, 762, 824, 1068, 1495
MslI CAYNNNNRTG 1 cut(s) 1088
Msp20I TGGCCA 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 3 cut(s) 232, 350, 1127
MspR9I CCNGG 1 cut(s) 443
MunI CAATTG 2 cut(s) 360, 702
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 3 cut(s) 48, 382, 1031
MwoI GCNNNNNNNGC 9 cut(s) 114, 422, 569, 623, 940, 1169, 1178, 1190, 1428
NaeI GCCGGC 1 cut(s) 1128
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 622
NdeII GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
NgoMIV GCCGGC 1 cut(s) 1126
NlaIII CATG 7 cut(s) 379, 421, 784, 947, 1005, 1321, 1436
NlaIV GGNNCC 7 cut(s) 52, 78, 94, 109, 211, 458, 604
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 61, 301
NsiI ATGCAT 2 cut(s) 286, 945
NspI RCATGY 1 cut(s) 1005
PaeR7I CTCGAG 1 cut(s) 1437
PagI TCATGA 1 cut(s) 375
PcsI WCGNNNNNNNCGW 2 cut(s) 1258, 1267
PdiI GCCGGC 1 cut(s) 1128
PfeI GAWTC 4 cut(s) 385, 793, 989, 1106
PleI GAGTC 4 cut(s) 401, 839, 856, 1266
PpsI GAGTC 4 cut(s) 401, 839, 856, 1266
PsiI TTATAA 1 cut(s) 773
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 7 cut(s) 52, 78, 94, 109, 211, 458, 604
PspPI GGNCC 4 cut(s) 27, 50, 76, 210
PspXI VCTCGAGB 1 cut(s) 1437
PstI CTGCAG 2 cut(s) 577, 1020
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 718
PvuII CAGCTG 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 1088
SaqAI TTAA 5 cut(s) 399, 762, 824, 1068, 1495
Sau3AI GATC 6 cut(s) 372, 438, 718, 1249, 1348, 1411
Sau96I GGNCC 4 cut(s) 27, 50, 76, 210
SchI GAGTC 4 cut(s) 401, 840, 856, 1266
ScrFI CCNGG 1 cut(s) 443
SfcI CTRYAG 3 cut(s) 428, 573, 1016
Sfr274I CTCGAG 1 cut(s) 1437
SinI GGWCC 3 cut(s) 27, 76, 210
SlaI CTCGAG 1 cut(s) 1437
SmiMI CAYNNNNRTG 1 cut(s) 1088
SmlI CTYRAG 1 cut(s) 1437
SmoI CTYRAG 1 cut(s) 1437
SsiI CCGC 6 cut(s) 48, 382, 734, 748, 1031, 1181
SspMI CTAG 1 cut(s) 1488
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 4 cut(s) 61, 166, 217, 1139
TaqI TCGA 5 cut(s) 185, 1252, 1261, 1270, 1438
TaqII GACCGA 1 cut(s) 64
TauI GCSGC 4 cut(s) 51, 737, 1034, 1184
TfiI GAWTC 4 cut(s) 385, 793, 989, 1106
Tru1I TTAA 5 cut(s) 399, 762, 824, 1068, 1495
Tru9I TTAA 5 cut(s) 399, 762, 824, 1068, 1495
TscAI CASTG 5 cut(s) 171, 220, 602, 936, 1449
TseFI GTSAC 2 cut(s) 61, 301
TseI GCWGC 6 cut(s) 6, 242, 545, 569, 572, 998
Tsp45I GTSAC 2 cut(s) 61, 301
TspDTI ATGAA 7 cut(s) 654, 960, 1002, 1218, 1383, 1392, 1460
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 5 cut(s) 171, 220, 602, 936, 1449
VpaK11BI GGWCC 3 cut(s) 27, 76, 210
XapI RAATTY 3 cut(s) 449, 1225, 1291
XbaI TCTAGA 1 cut(s) 1487
XceI RCATGY 1 cut(s) 1005
XhoI CTCGAG 1 cut(s) 1437
XspI CTAG 1 cut(s) 1488
Zsp2I ATGCAT 2 cut(s) 286, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.