Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017500

Physical Location & Seq

Genomic Coordinates Forward (+)

19672726 .. 19673567

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53065.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAAACTTCACATTATTTTCGTCGTCATTGCTTCATCATTTTGCTTCTTGTTATGTTTCTTTCATCGGTTTCTAATCTTGCTTCAAAAATCAACAACAGTTCTTTTGATGCAAGAGGCACTAAAATCAATAGTGATCCGAAACATATCTCCAATTCAAAGTCCGGAGGATCTCCTCAACGGGACAAAGAATATCCTCTGTGCGGGTCGAATAACCCGTCAGAGGATGGTATCATATATGCACCTTTTTGCGACAAAGGATATGTTTTTTCTCGAATCAAATTCGCTGACTATGGTCAGCCCGGTGGTTCATCATGTGAAACGCTTAAACGTGGAAACTGCGGTGCGCCGGCTACTTTGAGACTCGTCAAAGAGAATTGTCTTGGAAAAGAACGGTGTAGGATTTATATTACAGACGAGATGTTTGGGCCGACGCATTGTAAAGGACCTGTTAGCTTCGTTTTTTCTGCTATTTGTAAAAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

162

Amino Acids

17.91

Weight (kDa)

9.09

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUEL_Lectin	PF02140	84 - 150	3.4e-14	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis	RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora	Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa	Rorug02G0052700
rosa_samantha	Rh2BG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	2 cut(s)	204, 342
AclWI	GGATC	2 cut(s)	131, 178
AcsI	RAATTY	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	203, 223
AgsI	TTSAA	2 cut(s)	87, 159
AluBI	AGCT	1 cut(s)	456
AluI	AGCT	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	131, 178
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	4 cut(s)	203, 235, 407, 439
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	428, 446
AsuC2I	CCSGG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	446
BccI	CCATC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	428, 446
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	100
BoxI	GACNNNNGTC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 223
Bse118I	RCCGGY	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	28
BseAI	TCCGGA	1 cut(s)	164
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	203, 223
BseMI	GCAATG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	430
BsiSI	CCGG	3 cut(s)	165, 303, 350
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	203, 223
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	430
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	136, 170
BspACI	CCGC	2 cut(s)	204, 342
BspANI	GGCC	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	164
BspPI	GGATC	2 cut(s)	131, 178
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	349
BssMI	GATC	2 cut(s)	136, 170
Bst4CI	ACNGT	2 cut(s)	101, 396
BstC8I	GCNNGC	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	139, 173
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	136, 170
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	428, 446
CseI	GACGC	1 cut(s)	442
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	4 cut(s)	301, 353, 430, 456
CviKI_1	RGCY	4 cut(s)	301, 353, 430, 456
DpnI	GATC	2 cut(s)	138, 172
DpnII	GATC	2 cut(s)	136, 170
Eco47I	GGWCC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	446
FaeI	CATG	1 cut(s)	318
FaiI	YATR	9 cut(s)	56, 147, 236, 238, 240, 264, 294, 316, 408
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	3 cut(s)	165, 303, 350
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	2 cut(s)	276, 363
HpaII	CCGG	3 cut(s)	165, 303, 350
Hpy188I	TCNGA	2 cut(s)	141, 223
Hpy188III	TCNNGA	2 cut(s)	165, 273
Hpy99I	CGWCG	2 cut(s)	27, 436
HpyCH4III	ACNGT	2 cut(s)	101, 396
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	113, 242
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	136, 170
LpnPI	CCDG	4 cut(s)	178, 316, 363, 462
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	331
MalI	GATC	2 cut(s)	138, 172
MboI	GATC	2 cut(s)	136, 170
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	3 cut(s)	154, 281, 376
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	110, 161, 186, 207, 217
MroI	TCCGGA	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	349
MseI	TTAA	1 cut(s)	327
MspI	CCGG	3 cut(s)	165, 303, 350
MspR9I	CCNGG	1 cut(s)	303
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	136, 170
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	446
PshAI	GACNNNNGTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	446
PspPI	GGNCC	2 cut(s)	428, 446
PspPPI	RGGWCCY	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	136, 170
Sau96I	GGNCC	2 cut(s)	428, 446
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	4 cut(s)	247, 334, 451, 458
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	446
Sse9I	AATT	3 cut(s)	154, 281, 376
SsiI	CCGC	2 cut(s)	204, 342
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	101, 396
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	209, 274
TasI	AATT	3 cut(s)	154, 281, 376
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	25, 54, 300
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.