Rmu_sc0013794.1_g000001

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013794.1
OG0017500
Physical Location & Seq
Forward (+)
1 .. 1247
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013794.1_g000001.1.cds

Sequence Viewer

Length: 731 bp
gttccatctcgacagtggattggacgagggcgtccttagcggcgaagaatcaacagccactgacatggtataaggtcaattttgatgcacctgaaggagatgaacctttggctttggacatgggaagtatgggcaagggtcaactatggatcaatgggcaaagcattggaagatactggactacttatgctaacggggattgcagtgtgtgcagttattctggtaccttcaggcctaagaataagtgccaatatggttgtaaccatccaactcaacaatggtaccatgttcctaggtcctggttaaagcaatctaaaaacctattggtagtttttgaggagattggtggggatgtatcaaagattgctcttgtcaaacgttcagtgagcactgtttgtgctgaggtttctgaaaatcacccacataataggaattggcatactgagagccgtggccaactggaagagcaaaagaagcctataatgagcctacactgtacggatggatactccatttctgctattaagttttcaagttttggaactccatctggaagctgtgggaattttcagcacggtacatgtcacgctccaaactcgaaggctgtcattgagaagaagtgtataggtaagcagaaatgttcattgaccatatcagatgcgaattttgggatggatccatgtccaagcatgctgaaaaaattatctgttgaagctgtttgtgccccctga

Protein Analysis

242

Amino Acids

26.71

Weight (kDa)

8.68

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa Rorug02G0052700
rosa_samantha Rh2BG102300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 30
Acc65I GGTACC 2 cut(s) 223, 281
AccB1I GGYRCC 2 cut(s) 223, 281
AciI CCGC 1 cut(s) 40
AclI AACGTT 1 cut(s) 378
AclWI GGATC 3 cut(s) 157, 670, 683
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 2 cut(s) 564, 663
AcuI CTGAAG 2 cut(s) 113, 213
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 4 cut(s) 225, 283, 498, 579
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 2 cut(s) 533, 712
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 557, 715
AluI AGCT 2 cut(s) 557, 715
Alw21I GWGCWC 1 cut(s) 391
AlwI GGATC 3 cut(s) 157, 670, 683
AlwNI CAGNNNCTG 1 cut(s) 60
AoxI GGCC 2 cut(s) 232, 453
ApoI RAATTY 2 cut(s) 564, 663
Asp718I GGTACC 2 cut(s) 223, 281
AspA2I CCTAGG 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 1 cut(s) 296
AvrII CCTAGG 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 726
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BalI TGGCCA 1 cut(s) 455
BamHI GGATCC 1 cut(s) 675
BanI GGYRCC 2 cut(s) 223, 281
Bbv12I GWGCWC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 401
BccI CCATC 5 cut(s) 13, 272, 496, 555, 666
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 1 cut(s) 300
BciVI GTATCC 1 cut(s) 499
BfaI CTAG 1 cut(s) 293
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 1 cut(s) 41
BlnI CCTAGG 1 cut(s) 292
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 3 cut(s) 225, 283, 677
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 75, 648
Bpu10I CCTNAGC 2 cut(s) 36, 401
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 292, 450
Bse1I ACTGG 2 cut(s) 181, 464
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 292, 450
BseGI GGATG 4 cut(s) 264, 357, 507, 677
BseMII CTCAG 2 cut(s) 392, 434
BseNI ACTGG 2 cut(s) 181, 464
BseRI GAGGAG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 726
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 2 cut(s) 234, 455
BshNI GGYRCC 2 cut(s) 223, 281
BsiHKAI GWGCWC 1 cut(s) 391
BsnI GGCC 2 cut(s) 234, 455
Bsp1286I GDGCHC 2 cut(s) 391, 726
Bsp143I GATC 2 cut(s) 149, 675
BspACI CCGC 1 cut(s) 40
BspANI GGCC 2 cut(s) 234, 455
BspCNI CTCAG 2 cut(s) 393, 435
BspLI GGNNCC 3 cut(s) 225, 283, 677
BspPI GGATC 3 cut(s) 157, 670, 683
BspQI GCTCTTC 1 cut(s) 458
BspT107I GGYRCC 2 cut(s) 223, 281
BsrI ACTGG 2 cut(s) 181, 464
BssECI CCNNGG 2 cut(s) 292, 450
BssMI GATC 2 cut(s) 149, 675
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 4 cut(s) 15, 393, 496, 577
Bst6I CTCTTC 1 cut(s) 458
BstACI GRCGYC 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 4 cut(s) 36, 236, 401, 443
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 4 cut(s) 264, 357, 507, 677
BstKTI GATC 2 cut(s) 152, 678
BstMBI GATC 2 cut(s) 149, 675
BstMWI GCNNNNNNNGC 4 cut(s) 37, 209, 474, 721
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 2 cut(s) 584, 693
BstSCI CCNGG 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 675
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 1 cut(s) 675
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 2 cut(s) 234, 455
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 4 cut(s) 264, 357, 507, 677
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 6 cut(s) 20, 58, 210, 389, 389, 492
Cac8I GCNNGC 1 cut(s) 691
CaiI CAGNNNCTG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 20
Csp6I GTAC 4 cut(s) 224, 282, 497, 578
CviAII CATG 6 cut(s) 65, 120, 286, 581, 680, 690
CviQI GTAC 4 cut(s) 224, 282, 497, 578
DdeI CTNAG 4 cut(s) 36, 236, 401, 443
DpnI GATC 2 cut(s) 151, 677
DpnII GATC 2 cut(s) 149, 675
DrdI GACNNNNNNGTC 1 cut(s) 30
DseDI GACNNNNNNGTC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 113, 213
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 6 cut(s) 68, 123, 289, 584, 683, 693
FatI CATG 6 cut(s) 64, 119, 285, 580, 679, 689
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 4 cut(s) 251, 364, 514, 684
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 234, 455
HgaI GACGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 6 cut(s) 68, 123, 289, 584, 683, 693
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 48
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 411, 657
Hpy188III TCNNGA 2 cut(s) 9, 551
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 88, 237, 594
HpyCH4III ACNGT 4 cut(s) 15, 393, 496, 577
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 3 cut(s) 88, 203, 212
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 209, 474, 721
HpyF3I CTNAG 4 cut(s) 36, 236, 401, 443
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 6 cut(s) 68, 123, 289, 584, 683, 693
KpnI GGTACC 2 cut(s) 227, 285
Kzo9I GATC 2 cut(s) 149, 675
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 1 cut(s) 594
LpnPI CCDG 8 cut(s) 104, 162, 206, 216, 285, 312, 445, 536
LweI GCATC 2 cut(s) 75, 648
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 259, 583
MalI GATC 2 cut(s) 151, 677
MboI GATC 2 cut(s) 149, 675
MboII GAAGA 4 cut(s) 57, 182, 475, 627
MflI RGATCY 1 cut(s) 675
MhlI GDGCHC 2 cut(s) 391, 726
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 5 cut(s) 78, 432, 564, 663, 700
MluNI TGGCCA 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 3 cut(s) 20, 330, 396
Mox20I TGGCCA 1 cut(s) 455
MscI TGGCCA 1 cut(s) 455
MseI TTAA 2 cut(s) 304, 524
MslI CAYNNNNRTG 1 cut(s) 63
Msp20I TGGCCA 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 37, 209, 474, 721
NdeII GATC 2 cut(s) 149, 675
NlaIII CATG 6 cut(s) 68, 123, 289, 584, 683, 693
NlaIV GGNNCC 3 cut(s) 225, 283, 677
NmuCI GTSAC 1 cut(s) 583
NspI RCATGY 2 cut(s) 584, 693
PaeI GCATGC 1 cut(s) 693
PceI AGGCCT 1 cut(s) 234
PciI ACATGT 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 296
PscI ACATGT 1 cut(s) 580
Psp1406I AACGTT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 225, 283, 677
PspPI GGNCC 1 cut(s) 296
PspPPI RGGWCCY 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 675
RsaI GTAC 4 cut(s) 225, 283, 498, 579
RsaNI GTAC 4 cut(s) 224, 282, 497, 578
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 2 cut(s) 304, 524
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 149, 675
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 2 cut(s) 391, 726
SfaNI GCATC 2 cut(s) 75, 648
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 63
SphI GCATGC 1 cut(s) 693
Sse9I AATT 5 cut(s) 78, 432, 564, 663, 700
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 293
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 4 cut(s) 15, 393, 496, 577
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 10, 598
TasI AATT 5 cut(s) 78, 432, 564, 663, 700
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 2 cut(s) 304, 524
Tru9I TTAA 2 cut(s) 304, 524
TscAI CASTG 6 cut(s) 20, 65, 210, 389, 396, 499
TseFI GTSAC 1 cut(s) 583
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 2 cut(s) 116, 632
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 6 cut(s) 20, 65, 210, 389, 396, 499
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 2 cut(s) 564, 663
XceI RCATGY 2 cut(s) 584, 693
XcmI CCANNNNNNNNNTGG 2 cut(s) 12, 275
XmaJI CCTAGG 1 cut(s) 292
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.