RchiOBHm_Chr2g0162671

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017500
Physical Location & Seq
Reverse (-)
78386009 .. 78387514
1506 bp
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UTR
Exon/CDS
Intron
PRQ53091

Sequence Viewer

Length: 264 bp
ATGTCCCAAAATCCTGAAGTTCAACTGACTTGTGAACATGGATGGCACATTACTTCAATTAACTTTGCTAGCTATGGAACTCCTATCAGAAGCTGTGGCGCCACTTTCACTCTGGGAACTTGCAATGCTGATGTCTTAACAATCGTTGAGCAGGCTTGCCTTGGCAAAGAAGGATGTTCGATTACCATCTCCACAGAAACCTTAGGTGATCCTTGTCCAGGTGTATTAAAGAGTTTAGCTGTTCAAGCTCTTTGCAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

87

Amino Acids

9.11

Weight (kDa)

4.73

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUEL_Lectin PF02140 9 - 85 1.1e-19 D-galactoside/L-rhamnose binding SUEL lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa Rorug02G0052700
rosa_samantha Rh2BG102300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 23, 57, 245
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 4 cut(s) 72, 93, 239, 248
AluI AGCT 4 cut(s) 72, 93, 239, 248
AlwI GGATC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 202
BanI GGYRCC 1 cut(s) 98
BccI CCATC 2 cut(s) 36, 194
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 219
BmtI GCTAGC 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse21I CCTNAGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 47, 179
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 218
Bsp143I GATC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 100
BspOI GCTAGC 1 cut(s) 72
BspPI GGATC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 70, 153, 157
BstDEI CTNAG 1 cut(s) 202
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 47, 179
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 47, 179
Cac8I GCNNGC 3 cut(s) 70, 153, 157
CaiI CAGNNNCTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 101
CviAII CATG 1 cut(s) 38
CviJI RGCY 5 cut(s) 72, 93, 155, 239, 248
CviKI_1 RGCY 5 cut(s) 72, 93, 155, 239, 248
DdeI CTNAG 1 cut(s) 202
DinI GGCGCC 1 cut(s) 100
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 41
FaiI YATR 2 cut(s) 39, 75
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 2 cut(s) 54, 186
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 102
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 123, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 202
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 99
KasI GGCGCC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 27, 98, 137, 204, 231
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MfeI CAATTG 1 cut(s) 259
MluCI AATT 2 cut(s) 57, 259
Mly113I GGCGCC 1 cut(s) 99
MseI TTAA 3 cut(s) 60, 137, 227
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 245
NarI GGCGCC 1 cut(s) 99
NdeII GATC 1 cut(s) 208
NheI GCTAGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 257
PluTI GGCGCC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 93
SaqAI TTAA 3 cut(s) 60, 137, 227
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 219
SetI ASST 7 cut(s) 74, 95, 203, 208, 223, 241, 250
SfoI GGCGCC 1 cut(s) 100
Sse9I AATT 2 cut(s) 57, 259
SspDI GGCGCC 1 cut(s) 98
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 57, 259
Tru1I TTAA 3 cut(s) 60, 137, 227
Tru9I TTAA 3 cut(s) 60, 137, 227
TseI GCWGC 1 cut(s) 255
XagI CCTNNNNNAGG 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.