Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017500

Physical Location & Seq

Genomic Coordinates Forward (+)

19677938 .. 19678790

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAACTTTACAATGTCGTCATCAGCATGTCTTCATTTTGCTTCTTGTCCTATTTCATTCCTCTCTGTTTGGTTTAGCTTCAAAGATCGATGTTTCTGACGATGCACGAGGCATCAGAATCGACGGTGGCCAGAAACGTTTTCTAACTAATTCTCCTCAACATGGCAAGGAACATGCAGCGTGTACGAACGAAGAACCTGATCTCGGTCCGCTGACGCGTATTTCTTGCAATGAACCTGGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCACTGGTACATGTGGACACTTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGTCTTGGAAAAGAGAAGTGTCACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCAAGTGCAAAGGAGCTCCTATGCTCGCTGTTGAAACCACTTGTACAATAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

155

Amino Acids

16.99

Weight (kDa)

8.6

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUEL_Lectin	PF02140	75 - 152	6e-17	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis	RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora	Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa	Rorug02G0052700
rosa_samantha	Rh2BG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	220
AciI	CCGC	2 cut(s)	212, 321
AclI	AACGTT	1 cut(s)	139
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	130
AfaI	GTAC	3 cut(s)	187, 292, 457
AfiI	CCNNNNNNNGG	2 cut(s)	164, 206
AflIII	ACRYGT	2 cut(s)	218, 293
AgsI	TTSAA	2 cut(s)	84, 446
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	4 cut(s)	80, 332, 428, 464
AluI	AGCT	4 cut(s)	80, 332, 428, 464
Alw21I	GWGCWC	2 cut(s)	328, 430
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	209, 407
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	209, 407
BaeGI	GKGCMC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	430
BauI	CACGAG	2 cut(s)	108, 327
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	2 cut(s)	328, 430
BbvI	GCAGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	209, 407
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	209, 407
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	94, 123
BpiI	GAAGAC	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 206
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	90
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	164, 206
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	328, 430
BslI	CCNNNNNNNGG	2 cut(s)	164, 206
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	328, 430
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	4 cut(s)	87, 202, 258, 342
BspACI	CCGC	2 cut(s)	212, 321
BspANI	GGCC	1 cut(s)	132
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	238
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	4 cut(s)	87, 202, 258, 342
BssSI	CACGAG	2 cut(s)	108, 327
Bst2BI	CACGAG	2 cut(s)	108, 327
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	220
BstKTI	GATC	4 cut(s)	90, 205, 261, 345
BstMBI	GATC	4 cut(s)	87, 202, 258, 342
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	3 cut(s)	32, 179, 297
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	209, 407
ClaI	ATCGAT	1 cut(s)	90
CpoI	CGGWCCG	1 cut(s)	209
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	186, 291, 456
CspI	CGGWCCG	1 cut(s)	209
CviAII	CATG	5 cut(s)	29, 164, 176, 294, 337
CviJI	RGCY	5 cut(s)	80, 132, 332, 428, 464
CviKI_1	RGCY	5 cut(s)	80, 132, 332, 428, 464
CviQI	GTAC	3 cut(s)	186, 291, 456
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	4 cut(s)	89, 204, 260, 344
DpnII	GATC	4 cut(s)	87, 202, 258, 342
EaeI	YGGCCR	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	209, 407
Eco53kI	GAGCTC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	5 cut(s)	32, 167, 179, 297, 340
FaiI	YATR	8 cut(s)	30, 165, 177, 246, 276, 295, 338, 434
FatI	CATG	5 cut(s)	28, 163, 175, 293, 336
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	226
Hin1II	CATG	5 cut(s)	32, 167, 179, 297, 340
HinfI	GANTC	1 cut(s)	120
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	186, 299, 326
Hpy188I	TCNGA	3 cut(s)	100, 119, 411
Hpy8I	GTNNAC	3 cut(s)	186, 299, 326
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	139, 310
HpyCH4V	TGCA	5 cut(s)	107, 179, 231, 326, 420
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	2 cut(s)	139, 310
Hsp92II	CATG	5 cut(s)	32, 167, 179, 297, 340
Kzo9I	GATC	4 cut(s)	87, 202, 258, 342
LmnI	GCTCC	2 cut(s)	425, 433
LpnPI	CCDG	5 cut(s)	146, 213, 225, 252, 273
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	94, 123
MaeII	ACGT	2 cut(s)	139, 310
MaeIII	GTNAC	2 cut(s)	377, 388
MalI	GATC	4 cut(s)	89, 204, 260, 344
MboI	GATC	4 cut(s)	87, 202, 258, 342
MboII	GAAGA	2 cut(s)	25, 206
MfeI	CAATTG	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	328, 430
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	4 cut(s)	151, 262, 316, 355
MluI	ACGCGT	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	4 cut(s)	73, 104, 168, 333
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	220
NdeII	GATC	4 cut(s)	87, 202, 258, 342
NlaIII	CATG	5 cut(s)	32, 167, 179, 297, 340
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	3 cut(s)	32, 179, 297
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	430
Psp1406I	AACGTT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	209, 407
RsaI	GTAC	3 cut(s)	187, 292, 457
RsaNI	GTAC	3 cut(s)	186, 291, 456
RseI	CAYNNNNRTG	1 cut(s)	27
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	430
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	87, 202, 258, 342
Sau96I	GGNCC	2 cut(s)	209, 407
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	328, 430
SetI	ASST	9 cut(s)	82, 142, 202, 241, 313, 334, 384, 430, 466
SfaNI	GCATC	2 cut(s)	94, 123
SinI	GGWCC	2 cut(s)	209, 407
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	4 cut(s)	151, 262, 316, 355
SsiI	CCGC	2 cut(s)	212, 321
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	142, 313
TaqI	TCGA	2 cut(s)	90, 123
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	4 cut(s)	151, 262, 316, 355
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	25, 47, 249
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	209, 407
XceI	RCATGY	3 cut(s)	32, 179, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.