Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017500

Physical Location & Seq

Genomic Coordinates Forward (+)

22390448 .. 22390937

Gene Structure 490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGCCTACACTGTACGGATGGATACTCCATTTCTGCTATTAAGTTTTCAAGTTTTGGAACTCCATCTGGAAGCTGTGGGAATTTTCAGCACGGTACATGTCACGCTCCAAACTCGAAGGCTGTCATTGAGAAGAAGTGTATAGGTAAGCAGAAATGTTCATTGACCATATCAGATGCCAATTTTGGGATGGATCCATGTCCAAGCATGCTGAAAAAATTATCTGTTGAAGCTGTTTGTGCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

82

Amino Acids

8.6

Weight (kDa)

8.52

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUEL_Lectin	PF02140	3 - 80	4.9e-23	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis	RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora	Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa	Rorug02G0052700
rosa_samantha	Rh2BG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	2 cut(s)	16, 97
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	51, 230
AluBI	AGCT	2 cut(s)	75, 233
AluI	AGCT	2 cut(s)	75, 233
AlwI	GGATC	2 cut(s)	188, 201
ApoI	RAATTY	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	193
BccI	CCATC	3 cut(s)	14, 73, 184
BciVI	GTATCC	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	25, 195
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	188, 201
BssMI	GATC	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	14, 95
BstC8I	GCNNGC	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	25, 195
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	102, 211
BstSLI	GKGCMC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	25, 195
BtsIMutI	CAGTG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	15, 96
CviAII	CATG	3 cut(s)	99, 198, 208
CviJI	RGCY	4 cut(s)	6, 75, 122, 233
CviKI_1	RGCY	4 cut(s)	6, 75, 122, 233
CviQI	GTAC	2 cut(s)	15, 96
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
FaeI	CATG	3 cut(s)	102, 201, 211
FaiI	YATR	5 cut(s)	100, 143, 170, 199, 209
FatI	CATG	3 cut(s)	98, 197, 207
FokI	GGATG	2 cut(s)	32, 202
Hin1II	CATG	3 cut(s)	102, 201, 211
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	14, 95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	102, 201, 211
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	1 cut(s)	54
LweI	GCATC	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	1 cut(s)	145
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	82, 181, 218
MseI	TTAA	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	102, 201, 211
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	2 cut(s)	102, 211
PaeI	GCATGC	1 cut(s)	211
PciI	ACATGT	1 cut(s)	98
PscI	ACATGT	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	2 cut(s)	16, 97
RsaNI	GTAC	2 cut(s)	15, 96
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	3 cut(s)	77, 148, 235
SfaNI	GCATC	1 cut(s)	166
SgeI	CNNG	9 cut(s)	63, 81, 104, 111, 116, 127, 210, 216, 220
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	82, 181, 218
TaaI	ACNGT	2 cut(s)	14, 95
TaqI	TCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	82, 181, 218
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	17
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	2 cut(s)	102, 211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.