Rh2BG102300

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017500
Physical Location & Seq
Reverse (-)
8464191 .. 8464488
298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG102300.1

Sequence Viewer

Length: 225 bp
ATGGGTCGCCCCATTTCAGCAATCAAATTTGCTAGCTTTGGAGAACCTAAAGGGACTTGTGTATCATTTAGGAAAGGCCCAAGTGATGGCACAACTGCTTTGTCCATCCTTGAAAAGGAAAGTGTTGGAAAGGAGTCGTGCTCAATTGACGTATCAGAAAGCATGTTTGGCTCTGCAAATTGTGATGATATTGTAAAGAAGCTGGCCGTGGAGGCAGTTTGTTAG

Protein Analysis

74

Amino Acids

7.72

Weight (kDa)

5.28

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUEL_Lectin PF02140 3 - 74 3.5e-15 D-galactoside/L-rhamnose binding SUEL lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa Rorug02G0052700
rosa_samantha Rh2BG102300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 86, 115
AgsI TTSAA 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 2 cut(s) 36, 202
AluI AGCT 2 cut(s) 36, 202
Alw21I GWGCWC 1 cut(s) 143
AoxI GGCC 2 cut(s) 76, 204
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 77
AsuNHI GCTAGC 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 2 cut(s) 80, 113
BceAI ACGGC 1 cut(s) 191
BfaI CTAG 1 cut(s) 33
BglI GCCNNNNNGGC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 77
BmtI GCTAGC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 115
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 86, 115
BshFI GGCC 2 cut(s) 78, 206
BsiHKAI GWGCWC 1 cut(s) 143
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 86, 115
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 78, 206
Bsp1286I GDGCHC 1 cut(s) 143
BspANI GGCC 2 cut(s) 78, 206
BspOI GCTAGC 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 34, 204
BstDSI CCRYGG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 168, 212
BstNSI RCATGY 1 cut(s) 166
BsuRI GGCC 2 cut(s) 78, 206
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 34, 204
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 163
CviJI RGCY 5 cut(s) 36, 78, 171, 202, 206
CviKI_1 RGCY 5 cut(s) 36, 78, 171, 202, 206
EaeI YGGCCR 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 113
FaeI CATG 1 cut(s) 166
FaiI YATR 1 cut(s) 164
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 162
FokI GGATG 1 cut(s) 92
FspBI CTAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 78, 206
Hin1II CATG 1 cut(s) 166
HinfI GANTC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 212
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 166
LpnPI CCDG 1 cut(s) 188
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 150
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 3 cut(s) 26, 144, 178
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 205
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 168, 212
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 166
NspI RCATGY 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 86
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 38, 49, 153, 204
SgeI CNNG 8 cut(s) 45, 69, 93, 122, 150, 175, 215, 220
Sse9I AATT 3 cut(s) 26, 144, 178
SspMI CTAG 1 cut(s) 33
TaiI ACGT 1 cut(s) 153
TasI AATT 3 cut(s) 26, 144, 178
Van91I CCANNNNNTGG 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 166
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.