Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401661.1

Orthogroup ID

OG0017500

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1108

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

gtcaattttgatgcacctgaaggagatgaacctttggctttggacatgggaagtatgggcaagggtcaactatggatcaatgggcaaagcattggaagatactggactacttatgctaacggggattgcagtgtgtgcagttattctggtaccttcaggcctaagaataagtgccaatatggttgtaaccatccaactcaacaatggtaccatgttcctaggtcctggttaaagcaatctaaaaacctattggtagtttttgaggagattggtggggatgtatcaaagattgctcttgtcaaacgttcagtgagcactgtttgtgctgaggtttctgaaaatcacccacataataggaattggcatactgagagccgtggccaactggaagagcaaaagaagcctataatgagcctacactgtacggatggatactccatttctgctattaagttttcaagttttggaactccatctggaagctgtgggaattttcagcacggtacatgtcacgctccaaactcgaaggctgtcattgagaagaagtgtataggtaagcagaaatgttcattgaccatatcagatgcgaattttgggatggatccatgtccaagcatgctgaaaaaattatctgttgaagctgtttgtgccccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

218

Amino Acids

23.97

Weight (kDa)

8.43

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis	RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora	Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa	Rorug02G0052700
rosa_samantha	Rh2BG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	149, 207
AccB1I	GGYRCC	2 cut(s)	149, 207
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	3 cut(s)	83, 596, 609
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	490, 589
AcuI	CTGAAG	2 cut(s)	39, 139
AfaI	GTAC	4 cut(s)	151, 209, 424, 505
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	459, 638
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	483, 641
AluI	AGCT	2 cut(s)	483, 641
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	3 cut(s)	83, 596, 609
AoxI	GGCC	2 cut(s)	158, 379
ApoI	RAATTY	2 cut(s)	490, 589
Asp718I	GGTACC	2 cut(s)	149, 207
AspA2I	CCTAGG	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	222
AvrII	CCTAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	652
BaeI	ACNNNNGTAYC	2 cut(s)	191, 224
BalI	TGGCCA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	601
BanI	GGYRCC	2 cut(s)	149, 207
Bbv12I	GWGCWC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	327
BccI	CCATC	4 cut(s)	198, 422, 481, 592
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	425
BlnI	CCTAGG	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	3 cut(s)	151, 209, 603
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	574
Bpu10I	CCTNAGC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	218, 376
Bse1I	ACTGG	2 cut(s)	107, 390
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	218, 376
BseGI	GGATG	4 cut(s)	190, 283, 433, 603
BseMII	CTCAG	2 cut(s)	318, 360
BseNI	ACTGG	2 cut(s)	107, 390
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	160, 381
BshNI	GGYRCC	2 cut(s)	149, 207
BsiHKAI	GWGCWC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	160, 381
Bsp1286I	GDGCHC	2 cut(s)	317, 652
Bsp143I	GATC	2 cut(s)	75, 601
BspANI	GGCC	2 cut(s)	160, 381
BspCNI	CTCAG	2 cut(s)	319, 361
BspLI	GGNNCC	3 cut(s)	151, 209, 603
BspPI	GGATC	3 cut(s)	83, 596, 609
BspQI	GCTCTTC	1 cut(s)	384
BspT107I	GGYRCC	2 cut(s)	149, 207
BsrI	ACTGG	2 cut(s)	107, 390
BssECI	CCNNGG	2 cut(s)	218, 376
BssMI	GATC	2 cut(s)	75, 601
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	319, 422, 503
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	3 cut(s)	162, 327, 369
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	190, 283, 433, 603
BstKTI	GATC	2 cut(s)	78, 604
BstMBI	GATC	2 cut(s)	75, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 400, 647
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	2 cut(s)	510, 619
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	160, 381
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	4 cut(s)	190, 283, 433, 603
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	4 cut(s)	136, 315, 315, 418
Cac8I	GCNNGC	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	4 cut(s)	150, 208, 423, 504
CviAII	CATG	5 cut(s)	46, 212, 507, 606, 616
CviJI	RGCY	9 cut(s)	38, 160, 375, 381, 403, 414, 483, 530, 641
CviKI_1	RGCY	9 cut(s)	38, 160, 375, 381, 403, 414, 483, 530, 641
CviQI	GTAC	4 cut(s)	150, 208, 423, 504
DdeI	CTNAG	3 cut(s)	162, 327, 369
DpnI	GATC	2 cut(s)	77, 603
DpnII	GATC	2 cut(s)	75, 601
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	39, 139
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	5 cut(s)	49, 215, 510, 609, 619
FatI	CATG	5 cut(s)	45, 211, 506, 605, 615
FokI	GGATG	4 cut(s)	177, 290, 440, 610
FspBI	CTAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	160, 381
Hin1II	CATG	5 cut(s)	49, 215, 510, 609, 619
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	337, 583
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	14, 163, 520
HpyCH4III	ACNGT	3 cut(s)	319, 422, 503
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	14, 129, 138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 400, 647
HpyF3I	CTNAG	3 cut(s)	162, 327, 369
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	5 cut(s)	49, 215, 510, 609, 619
KpnI	GGTACC	2 cut(s)	153, 211
Kzo9I	GATC	2 cut(s)	75, 601
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	8 cut(s)	30, 88, 132, 142, 211, 238, 371, 462
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	2 cut(s)	185, 509
MalI	GATC	2 cut(s)	77, 603
MboI	GATC	2 cut(s)	75, 601
MboII	GAAGA	3 cut(s)	108, 401, 553
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	317, 652
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	5 cut(s)	4, 358, 490, 589, 626
MluNI	TGGCCA	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	2 cut(s)	256, 322
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	230, 450
Msp20I	TGGCCA	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	135, 400, 647
NdeII	GATC	2 cut(s)	75, 601
NlaIII	CATG	5 cut(s)	49, 215, 510, 609, 619
NlaIV	GGNNCC	3 cut(s)	151, 209, 603
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	2 cut(s)	510, 619
PaeI	GCATGC	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	160
PciI	ACATGT	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	222
PscI	ACATGT	1 cut(s)	506
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	151, 209, 603
PspPI	GGNCC	1 cut(s)	222
PspPPI	RGGWCCY	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	4 cut(s)	151, 209, 424, 505
RsaNI	GTAC	4 cut(s)	150, 208, 423, 504
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	230, 450
Sau3AI	GATC	2 cut(s)	75, 601
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	2 cut(s)	317, 652
SfaNI	GCATC	1 cut(s)	574
SinI	GGWCC	1 cut(s)	222
SphI	GCATGC	1 cut(s)	619
Sse9I	AATT	5 cut(s)	4, 358, 490, 589, 626
SseBI	AGGCCT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	319, 422, 503
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	524
TasI	AATT	5 cut(s)	4, 358, 490, 589, 626
Tru1I	TTAA	2 cut(s)	230, 450
Tru9I	TTAA	2 cut(s)	230, 450
TscAI	CASTG	4 cut(s)	136, 315, 322, 425
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	42, 558
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	4 cut(s)	136, 315, 322, 425
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	2 cut(s)	490, 589
XceI	RCATGY	2 cut(s)	510, 619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmaJI	CCTAGG	1 cut(s)	218
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.