Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017500

Physical Location & Seq

Genomic Coordinates Forward (+)

19676310 .. 19677291

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53075.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAAACTTCACATACTTTTCGTCGTCGTAATGGCTTCGTTTTGCTTCTTGTTCTGATTCATTTTTCTGTGTTTGGTTTCTCTTCAAATATCGATGTTTCTTATAGAGCAAGAGGCATCAAAATCAACGGTGACCAAAAACGTGTTCTCTCGAATTCCAATCACCCTCGCAGCGATTTTCGGAAATCTCTTCAACATGGAAAGGAACATTCAGCATGTACGAATCATAAATCTGTTCGAGGTCCAATAACGCGTATTTTTTGCCAAGACGGATATGTTATCACCAATATCAATTTTGCCGACTATGGAAATCCCACTGGTACATGTGAACACTTTAGACACGGCAAATGCGGCGCACCAGCTACTTTGAGGCTTGTCAAAAAGAATTGCCTTGGAAAACCGAAGTGTGTATTTTTAGTGACGGATGAGATGTTTGGTCCGAGCCATTGCAAGGGACCTCCTACACTCGCGGTTGACGCCACTTGTACAAAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

165

Amino Acids

18.38

Weight (kDa)

9.87

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUEL_Lectin	PF02140	87 - 162	3.3e-16	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53050 AT3G53065 AT3G53070 AT3G53075 AT3G53075 AT3G53080
rosa_chinensis	RchiOBHm_Chr2g0162671 RchiOBHm_Chr6g0266221
rosa_multiflora	Rmu_co8401661.1_g000001 Rmu_sc0013794.1_g000001
rosa_rugosa	Rorug02G0052700
rosa_samantha	Rh2BG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	253, 470
AciI	CCGC	2 cut(s)	351, 470
AcsI	RAATTY	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	3 cut(s)	220, 322, 487
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	3 cut(s)	142, 251, 323
AgsI	TTSAA	2 cut(s)	87, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	3 cut(s)	242, 437, 455
AsuHPI	GGTGA	3 cut(s)	143, 155, 274
AvaII	GGWCC	3 cut(s)	242, 437, 455
BbvI	GCAGC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	496
BisI	GCNGC	2 cut(s)	172, 352
BlsI	GCNGC	2 cut(s)	173, 353
Bme18I	GGWCC	3 cut(s)	242, 437, 455
BmgT120I	GGNCC	3 cut(s)	242, 437, 455
BmiI	GGNNCC	1 cut(s)	456
BmsI	GCATC	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	445
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	253, 470
BshVI	ATCGAT	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	468
Bsp1407I	TGTACA	1 cut(s)	485
BspACI	CCGC	2 cut(s)	351, 470
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	253, 470
BspLI	GGNNCC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	88, 195
BstACI	GRCGYC	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	485
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	2 cut(s)	253, 470
BstHHI	GCGC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 476
BstNSI	RCATGY	2 cut(s)	219, 327
BstPI	GGTNACC	1 cut(s)	131
BstUI	CGCG	2 cut(s)	253, 470
BstV1I	GCAGC	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	315
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	242, 437, 455
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	219, 321, 486
CviAII	CATG	3 cut(s)	197, 216, 324
CviJI	RGCY	4 cut(s)	36, 362, 373, 444
CviKI_1	RGCY	4 cut(s)	36, 362, 373, 444
CviQI	GTAC	3 cut(s)	219, 321, 486
Eam1104I	CTCTTC	2 cut(s)	88, 195
EarI	CTCTTC	2 cut(s)	88, 195
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	3 cut(s)	242, 437, 455
Eco91I	GGTNACC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	200, 219, 327
FaiI	YATR	8 cut(s)	15, 105, 198, 217, 228, 276, 306, 325
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	3 cut(s)	196, 215, 323
Fnu4HI	GCNGC	2 cut(s)	172, 352
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	172, 352
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	2 cut(s)	172, 352
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	200, 219, 327
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	58, 223
HphI	GGTGA	3 cut(s)	143, 155, 274
Hpy166II	GTNNAC	2 cut(s)	329, 475
Hpy188I	TCNGA	3 cut(s)	57, 183, 441
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	329, 475
Hpy99I	CGWCG	2 cut(s)	27, 30
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 476
HpySE526I	ACGT	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	200, 219, 327
HspAI	GCGC	1 cut(s)	354
LpnPI	CCDG	2 cut(s)	303, 372
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	496
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	131, 418
MboII	GAAGA	2 cut(s)	75, 182
MluCI	AATT	3 cut(s)	154, 292, 385
MluI	ACGCGT	1 cut(s)	251
MnlI	CCTC	5 cut(s)	107, 177, 233, 363, 468
MvnI	CGCG	2 cut(s)	253, 470
MwoI	GCNNNNNNNGC	2 cut(s)	351, 476
NlaIII	CATG	3 cut(s)	200, 219, 327
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	2 cut(s)	131, 418
NspI	RCATGY	2 cut(s)	219, 327
PciI	ACATGT	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	58, 223
PkrI	GCNGC	2 cut(s)	173, 353
PpuMI	RGGWCCY	1 cut(s)	455
PscI	ACATGT	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	455
PspEI	GGTNACC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	3 cut(s)	242, 437, 455
PspPPI	RGGWCCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	220, 322, 487
RsaNI	GTAC	3 cut(s)	219, 321, 486
SatI	GCNGC	2 cut(s)	172, 352
Sau96I	GGNCC	3 cut(s)	242, 437, 455
SetI	ASST	5 cut(s)	145, 244, 364, 460, 497
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	3 cut(s)	242, 437, 455
Sse9I	AATT	3 cut(s)	154, 292, 385
SsiI	CCGC	2 cut(s)	351, 470
SspMI	CTAG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	93, 152, 238
TasI	AATT	3 cut(s)	154, 292, 385
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	58, 223
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	2 cut(s)	131, 418
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	2 cut(s)	131, 418
TspDTI	ATGAA	2 cut(s)	17, 50
TspGWI	ACGGA	2 cut(s)	285, 437
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	3 cut(s)	242, 437, 455
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	219, 327
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.