Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Reverse (-)

19718253 .. 19719507

Gene Structure 1255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTTTAAGAAGGAAGAAACACTTCGTAGAGGGCCATGGCTCGAAGAAGAAGACGAACGGCTAGTGAAGGTCATTAGTCTTTTGGGAGAACGTCGTTGGGATTCTTTAGCAATAGTTTCCGGTTTGAAGAGGAGTGGTAAGAGTTGCAGGCTAAGGTGGATGAACTATCTGAATCCGACTCTGAAGCGTGGACCGATGAGTCAAGAAGAAGAGAGAATCATCTTTCAGCTCCATGCTCTATGGGGTAACAAGTGGTCGAAGATTGCGAGAAGATTACCCGGTAGGACTGATAACGAGATAAAGAACTATTGGAGAACTCATTATAGAAAGAAACAGGAAGCTCAAAACTATGGAAAGCTCTTTGAGTGGAGAGGAAATACAGGAGAAGAATTGTTGCACAAGTATAAGGAAACAGAGATCACTAGGACAAAGACGACGTCTCAAGAACATGGTTTTGTTGAAGTTGTGAGCATGGAAAGTGGTAAAGAAGCCAACGGTGGTGTTGGTGGAAGAGAAAGCTTCGGTGTTATGAAATCACCGTATGAAAATCGGATTTCGGATTGGATATCAGAGATTTCTACTGACCAGAGTGAAGCAAATCTTTCAGAAGATCACAGCAGCAATAGCTGCAGTGAGAACAATATTAACATTGGTACTTGGTGGTTTCAAGAGACTAGGGACTTTGAGGAGTTTTCATGTTCTCTATGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

238

Amino Acids

28.0

Weight (kDa)

6.56

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 75	7.6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	35 - 80	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	201
AatII	GACGTC	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	130, 464, 671
AluBI	AGCT	5 cut(s)	232, 344, 361, 522, 630
AluI	AGCT	5 cut(s)	232, 344, 361, 522, 630
Alw26I	GTCTC	2 cut(s)	447, 668
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	621, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	35, 194
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	617, 633
BceAI	ACGGC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	447, 668
BfaI	CTAG	3 cut(s)	65, 426, 678
BfmI	CTRYAG	1 cut(s)	631
BisI	GCNGC	2 cut(s)	622, 631
BlsI	GCNGC	2 cut(s)	623, 632
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	35, 194
BmrFI	CCNGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	148, 704
BseXI	GCAGC	2 cut(s)	617, 633
BshFI	GGCC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	123, 282
BslFI	GGGAC	1 cut(s)	695
BsmAI	GTCTC	2 cut(s)	447, 668
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	420, 613
Bsp19I	CCATGG	1 cut(s)	38
BspANI	GGCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	635
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	420, 613
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	500, 543
Bst6I	CTCTTC	3 cut(s)	125, 207, 508
BstACI	GRCGYC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	423, 616
BstMAI	GTCTC	2 cut(s)	447, 668
BstMBI	GATC	2 cut(s)	420, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	627, 630
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	631
BstV1I	GCAGC	2 cut(s)	617, 633
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	35, 194
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	5 cut(s)	39, 236, 452, 475, 699
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	422, 615
DpnII	GATC	2 cut(s)	420, 613
DrdI	GACNNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	201
Eam1104I	CTCTTC	3 cut(s)	125, 207, 508
EarI	CTCTTC	3 cut(s)	125, 207, 508
Eco130I	CCWWGG	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	5 cut(s)	42, 239, 455, 478, 702
FalI	AAGNNNNNCTT	4 cut(s)	9, 41, 588, 620
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	5 cut(s)	38, 235, 451, 474, 698
Fnu4HI	GCNGC	2 cut(s)	622, 631
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	622, 631
FspBI	CTAG	3 cut(s)	65, 426, 678
GluI	GCNGC	2 cut(s)	622, 631
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	123, 282
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	5 cut(s)	42, 239, 455, 478, 702
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	5 cut(s)	104, 175, 181, 202, 219
HpaII	CCGG	2 cut(s)	123, 282
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	7 cut(s)	174, 180, 186, 555, 562, 574, 610
Hpy188III	TCNNGA	3 cut(s)	206, 446, 671
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	2 cut(s)	99, 442
HpyAV	CCTTC	2 cut(s)	7, 64
HpyCH4III	ACNGT	2 cut(s)	500, 543
HpyCH4IV	ACGT	2 cut(s)	94, 440
HpyCH4V	TGCA	3 cut(s)	150, 400, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	627, 630
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	94, 440
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	5 cut(s)	42, 239, 455, 478, 702
Kzo9I	GATC	2 cut(s)	420, 613
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	6 cut(s)	136, 136, 295, 323, 369, 602
Lsp1109I	GCAGC	2 cut(s)	617, 633
MaeI	CTAG	3 cut(s)	65, 426, 678
MaeII	ACGT	2 cut(s)	94, 440
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	422, 615
MboI	GATC	2 cut(s)	420, 613
MluCI	AATT	1 cut(s)	392
MlyI	GAGTC	2 cut(s)	175, 211
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	4 cut(s)	26, 126, 368, 682
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	9, 648
MspI	CCGG	2 cut(s)	123, 282
MspR9I	CCNGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	627, 630
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	420, 613
NlaIII	CATG	5 cut(s)	42, 239, 455, 478, 702
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	104, 175, 219
PflFI	GACNNNGTC	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	623, 632
PleI	GAGTC	2 cut(s)	175, 210
PpsI	GAGTC	2 cut(s)	175, 210
PspPI	GGNCC	2 cut(s)	35, 194
PstI	CTGCAG	1 cut(s)	635
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	9, 648
SatI	GCNGC	2 cut(s)	622, 631
Sau3AI	GATC	2 cut(s)	420, 613
Sau96I	GGNCC	2 cut(s)	35, 194
SchI	GAGTC	2 cut(s)	175, 211
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	9 cut(s)	75, 97, 161, 234, 346, 363, 443, 524, 632
SfcI	CTRYAG	1 cut(s)	631
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	1 cut(s)	392
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	3 cut(s)	65, 426, 678
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	500, 543
TaiI	ACGT	2 cut(s)	97, 443
TaqI	TCGA	2 cut(s)	45, 260
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	104, 175, 219
Tru1I	TTAA	2 cut(s)	9, 648
Tru9I	TTAA	2 cut(s)	9, 648
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	2 cut(s)	621, 630
TspDTI	ATGAA	4 cut(s)	179, 548, 561, 687
TspRI	CASTG	1 cut(s)	640
Tth111I	GACNNNGTC	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	65, 426, 678
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.