Rroxscaffold_6G00410680
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016057
Physical Location & Seq
Reverse (-)
33080906 .. 33082260
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410680.1

Sequence Viewer

Length: 699 bp
ATGGCTTATGAAGCAGCAGCTGTGGAACGTGAAAAACTGTGCAAAGGTCCATGGCTAGAAGAGGAAGATGAACGACTCACCATGTATGTAAGACTTAAGGGGGATCGGAGGTGGGATGCATTAGCCAAGGAATCAGGTCTAAGGAGAAGTGGTAGGAGTTGCAGGTTGCGGTGGTTGAACTATCTCCGCCCCAATCTTAAGCATGGTCACATTTCTGTCGAAGAAGAGAAAATTATCCTTCAACTTCATGAACTTTGGGGTAACAAGTGGTCAAAGATTGCAAGAGTGTTGCCAGGAAGAACTGATAATGAGATCAAGAACTACTGGAGGACACATTTAGTGAAGAAAGCACAAATTCAAGATGGTGATGCTGCATCTGCTGGAAACTTGCAATGTACATCGAAAAGGGCCCAACAGGGTCTTTTCTTTCAGGATGGTGATGATATGAGTGCTGAAAAAAATATAACTTTGATCAAGATCAGGACTCAGTTGAGAATTTATGGGGAGCTAAGGAAACCTACTCTGATGATCTCTGTTTATCGGACTTTGCCTTGCCAAGCTCTCCATATGAAACATGGTTATCAGATTGGATATCTGAATTATCGAGTGAACAAAATGTGCATGTTACTCCAGTTTGTTCTTCCCAACTCACCAAGTGGAATTTTGGCACATATGGGGACAGAGTATGCTGATGAATAG

Protein Analysis

232

Amino Acids

26.96

Weight (kDa)

9.4

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 4e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 1e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 5.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 116 8.4e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53200 AT3G53200
fragaria_vesca FvH4_6g16660
malus_domestica MD12G1108400.v1.1
prunus_persica Prupe.7G126800_v2.0.a1
pyrus_communis pycom04g08500 pycom12g10860
rosa_chinensis RchiOBHm_Chr3g0470621
rosa_laevigata RLG00000024253
rosa_multiflora Rmu_sc0002115.1_g000020
rosa_roxburghii Rroxscaffold_6G00410680
rosa_rugosa Rorug03G0110600
rosa_samantha Rh3AG160700 Rh3DG189500
rosa_wichuraiana Rw3G015190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 153
AciI CCGC 2 cut(s) 169, 187
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 3 cut(s) 354, 495, 660
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 1 cut(s) 397
AflII CTTAAG 2 cut(s) 95, 197
AgsI TTSAA 3 cut(s) 178, 242, 359
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 20, 508, 560
AluI AGCT 3 cut(s) 20, 508, 560
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 408
ApaI GGGCCC 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 14, 17, 371
ApoI RAATTY 3 cut(s) 354, 495, 660
AspS9I GGNCC 3 cut(s) 47, 408, 409
AsuHPI GGTGA 4 cut(s) 70, 377, 449, 642
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 26, 29, 358
BccI CCATC 2 cut(s) 356, 428
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 471
BfaI CTAG 1 cut(s) 56
BfrI CTTAAG 2 cut(s) 95, 197
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 3 cut(s) 15, 18, 372
BlsI GCNGC 3 cut(s) 16, 19, 373
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 3 cut(s) 47, 408, 409
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 106, 358, 383
BpmI CTGGAG 2 cut(s) 346, 614
Bpu10I CCTNAGC 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 50, 126
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 2 cut(s) 329, 631
Bse3DI GCAATG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 476
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 50, 126
BseGI GGATG 2 cut(s) 121, 439
BseJI GATNNNNATC 1 cut(s) 476
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 329, 631
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 3 cut(s) 26, 29, 358
BshFI GGCC 1 cut(s) 410
BslFI GGGAC 1 cut(s) 691
BsmFI GGGAC 1 cut(s) 691
BsnI GGCC 1 cut(s) 410
Bsp120I GGGCCC 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 412
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 5 cut(s) 103, 312, 471, 477, 528
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 2 cut(s) 169, 187
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 1 cut(s) 499
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 410
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 1 cut(s) 111
BspTI CTTAAG 2 cut(s) 95, 197
BsrDI GCAATG 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 2 cut(s) 329, 631
BssECI CCNNGG 2 cut(s) 50, 126
BssMI GATC 5 cut(s) 103, 312, 471, 477, 528
BssT1I CCWWGG 2 cut(s) 50, 126
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 54, 219
BstAFI CTTAAG 2 cut(s) 95, 197
BstAUI TGTACA 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 140, 486, 509
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 121, 439
BstKTI GATC 5 cut(s) 106, 315, 474, 480, 531
BstMBI GATC 5 cut(s) 103, 312, 471, 477, 528
BstMWI GCNNNNNNNGC 2 cut(s) 11, 377
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 3 cut(s) 26, 29, 358
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 121, 439
BveI ACCTGC 1 cut(s) 153
CaiI CAGNNNCTG 1 cut(s) 20
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 3 cut(s) 47, 408, 409
Csp6I GTAC 1 cut(s) 396
CviAII CATG 6 cut(s) 51, 82, 203, 248, 575, 622
CviJI RGCY 7 cut(s) 5, 20, 55, 125, 410, 508, 560
CviKI_1 RGCY 7 cut(s) 5, 20, 55, 125, 410, 508, 560
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 3 cut(s) 140, 486, 509
DpnI GATC 5 cut(s) 105, 314, 473, 479, 530
DpnII GATC 5 cut(s) 103, 312, 471, 477, 528
DraIII CACNNNGTG 1 cut(s) 656
Eam1104I CTCTTC 2 cut(s) 54, 219
EarI CTCTTC 2 cut(s) 54, 219
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 50, 126
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 50, 126
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 2 cut(s) 50, 126
FaeI CATG 6 cut(s) 54, 85, 206, 251, 578, 625
FaqI GGGAC 1 cut(s) 691
FatI CATG 6 cut(s) 50, 81, 202, 247, 574, 621
FauNDI CATATG 2 cut(s) 567, 672
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 15, 18, 372
FokI GGATG 2 cut(s) 128, 446
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 3 cut(s) 15, 18, 372
FspBI CTAG 1 cut(s) 56
GluI GCNGC 3 cut(s) 15, 18, 372
GsuI CTGGAG 2 cut(s) 346, 614
HaeIII GGCC 1 cut(s) 410
Hin1II CATG 6 cut(s) 54, 85, 206, 251, 578, 625
HinfI GANTC 3 cut(s) 75, 131, 484
HphI GGTGA 4 cut(s) 70, 377, 449, 642
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 5 cut(s) 108, 525, 543, 585, 597
Hpy188III TCNNGA 6 cut(s) 248, 316, 359, 431, 475, 481
Hpy8I GTNNAC 1 cut(s) 610
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 7 cut(s) 42, 119, 162, 281, 374, 391, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 377
HpyF3I CTNAG 3 cut(s) 140, 486, 509
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 6 cut(s) 54, 85, 206, 251, 578, 625
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 5 cut(s) 103, 312, 471, 477, 528
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 26, 29, 358
LweI GCATC 3 cut(s) 106, 358, 383
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 3 cut(s) 206, 260, 624
MalI GATC 5 cut(s) 105, 314, 473, 479, 530
MboI GATC 5 cut(s) 103, 312, 471, 477, 528
MboII GAAGA 7 cut(s) 71, 77, 233, 236, 309, 355, 632
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 5 cut(s) 231, 354, 495, 598, 660
MlyI GAGTC 2 cut(s) 69, 478
MnlI CCTC 3 cut(s) 55, 102, 321
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 2 cut(s) 96, 198
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 2 cut(s) 95, 197
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 11, 377
NcoI CCATGG 1 cut(s) 50
NdeI CATATG 2 cut(s) 567, 672
NdeII GATC 5 cut(s) 103, 312, 471, 477, 528
NlaIII CATG 6 cut(s) 54, 85, 206, 251, 578, 625
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 625
PagI TCATGA 1 cut(s) 247
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 16, 19, 373
PleI GAGTC 2 cut(s) 69, 478
PpsI GAGTC 2 cut(s) 69, 478
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 410
PspOMI GGGCCC 1 cut(s) 408
PspPI GGNCC 3 cut(s) 47, 408, 409
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 96, 198
SatI GCNGC 3 cut(s) 15, 18, 372
Sau3AI GATC 5 cut(s) 103, 312, 471, 477, 528
Sau96I GGNCC 3 cut(s) 47, 408, 409
SchI GAGTC 2 cut(s) 69, 478
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 412
SetI ASST 9 cut(s) 22, 31, 49, 113, 139, 167, 510, 520, 562
SfaNI GCATC 3 cut(s) 106, 358, 383
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 95, 197
SmoI CTYRAG 2 cut(s) 95, 197
Sse9I AATT 5 cut(s) 231, 354, 495, 598, 660
SsiI CCGC 2 cut(s) 169, 187
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 2 cut(s) 50, 126
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 31
TaqI TCGA 3 cut(s) 219, 401, 604
TasI AATT 5 cut(s) 231, 354, 495, 598, 660
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 96, 198
Tru9I TTAA 2 cut(s) 96, 198
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 3 cut(s) 14, 17, 371
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 5 cut(s) 24, 84, 236, 264, 584
Vha464I CTTAAG 2 cut(s) 95, 197
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 3 cut(s) 354, 495, 660
XceI RCATGY 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 572
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.