Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002115.1

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Forward (+)

115344 .. 116245

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002115.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggcttatgaagcagcagctgtggaaggtgaaaaactgcgcaaaggtccatggctagaagaggaagatgaacgactcaccatgtgtgtaagacttaagggggatcggaggtgggatgcattagccaaggaatcaggtctaaggagaagtggtaggagttgcaggttgcggtggttaaactatctccgccccaatcttaagcatggtcacatatctgtcgaagaagagaaaattatccttcatcttcatgaactttggggtaacaagtggtcaaagattgcaagagtgttgccaggaagaactgataatgagatcaagaactactggaggacacatttagtgaagaaagcacaaattcaagatggagatgctgcatctgctggaaacttgcaatgtacatcgaaaagggcccaacagggtcttttctttcaggatggtgatgatatgagtgctgaaaaaaaatataactttgatcaagatcaggactcagttgagaagttatggggagctaaggaaacttactctgatgatctctgtttatcggactttgccttgccaagctctccatatgaaacatggttatcagattggatatctgaattatcgagtgaacaaagtggtataacatggattccacatcatgatagtgatgcatgggattgttcaagttccctctgggacatgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

229

Amino Acids

26.51

Weight (kDa)

5.44

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	2 cut(s)	169, 187
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	397
AflII	CTTAAG	2 cut(s)	95, 197
AgsI	TTSAA	2 cut(s)	359, 666
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	20, 509, 561
AluI	AGCT	3 cut(s)	20, 509, 561
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	408
ApaI	GGGCCC	1 cut(s)	412
ApeKI	GCWGC	3 cut(s)	14, 17, 371
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	47, 408, 409
AsuHPI	GGTGA	3 cut(s)	41, 70, 449
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	26, 29, 358
BccI	CCATC	2 cut(s)	356, 428
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	1 cut(s)	56
BfrI	CTTAAG	2 cut(s)	95, 197
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	3 cut(s)	15, 18, 372
BlsI	GCNGC	3 cut(s)	16, 19, 373
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	47, 408, 409
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	106, 358, 383, 640
BpmI	CTGGAG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	50, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	50, 126
BseGI	GGATG	2 cut(s)	121, 439
BseJI	GATNNNNATC	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	26, 29, 358
BshFI	GGCC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	410
Bsp120I	GGGCCC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	103, 312, 472, 478, 529
Bsp19I	CCATGG	1 cut(s)	50
BspACI	CCGC	2 cut(s)	169, 187
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	500
BspHI	TCATGA	2 cut(s)	247, 640
BspLI	GGNNCC	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	111
BspTI	CTTAAG	2 cut(s)	95, 197
BsrDI	GCAATG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	50, 126
BssMI	GATC	5 cut(s)	103, 312, 472, 478, 529
BssT1I	CCWWGG	2 cut(s)	50, 126
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	54, 219
BstAFI	CTTAAG	2 cut(s)	95, 197
BstAUI	TGTACA	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	140, 487, 510
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	121, 439
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	106, 315, 475, 481, 532
BstMBI	GATC	5 cut(s)	103, 312, 472, 478, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 377
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	3 cut(s)	26, 29, 358
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	121, 439
BveI	ACCTGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	2 cut(s)	247, 640
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	47, 408, 409
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	9 cut(s)	51, 82, 203, 248, 576, 627, 641, 654, 682
CviJI	RGCY	7 cut(s)	5, 20, 55, 125, 410, 509, 561
CviKI_1	RGCY	7 cut(s)	5, 20, 55, 125, 410, 509, 561
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	140, 487, 510
DpnI	GATC	5 cut(s)	105, 314, 474, 480, 531
DpnII	GATC	5 cut(s)	103, 312, 472, 478, 529
DraIII	CACNNNGTG	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	54, 219
EarI	CTCTTC	2 cut(s)	54, 219
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	50, 126
Eco24I	GRGCYC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	50, 126
EcoT22I	ATGCAT	2 cut(s)	121, 655
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	50, 126
FaeI	CATG	9 cut(s)	54, 85, 206, 251, 579, 630, 644, 657, 685
FatI	CATG	9 cut(s)	50, 81, 202, 247, 575, 626, 640, 653, 681
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	15, 18, 372
FokI	GGATG	2 cut(s)	128, 446
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	15, 18, 372
FspBI	CTAG	1 cut(s)	56
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	15, 18, 372
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	9 cut(s)	54, 85, 206, 251, 579, 630, 644, 657, 685
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	75, 131, 485, 631
HphI	GGTGA	3 cut(s)	41, 70, 449
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	5 cut(s)	108, 526, 544, 586, 598
Hpy188III	TCNNGA	7 cut(s)	248, 316, 359, 431, 476, 482, 641
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	2 cut(s)	20, 248
HpyCH4V	TGCA	6 cut(s)	119, 162, 281, 374, 391, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 377
HpyF3I	CTNAG	3 cut(s)	140, 487, 510
Hsp92II	CATG	9 cut(s)	54, 85, 206, 251, 579, 630, 644, 657, 685
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	103, 312, 472, 478, 529
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	3 cut(s)	26, 29, 358
LweI	GCATC	4 cut(s)	106, 358, 383, 640
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	206, 260
MalI	GATC	5 cut(s)	105, 314, 474, 480, 531
MboI	GATC	5 cut(s)	103, 312, 472, 478, 529
MboII	GAAGA	7 cut(s)	71, 77, 233, 236, 236, 309, 355
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	3 cut(s)	231, 354, 599
MlyI	GAGTC	2 cut(s)	69, 479
MnlI	CCTC	4 cut(s)	55, 102, 321, 683
Mph1103I	ATGCAT	2 cut(s)	121, 655
MseI	TTAA	3 cut(s)	96, 176, 198
MslI	CAYNNNNRTG	2 cut(s)	246, 645
MspA1I	CMGCKG	1 cut(s)	20
MspCI	CTTAAG	2 cut(s)	95, 197
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	11, 377
NcoI	CCATGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	5 cut(s)	103, 312, 472, 478, 529
NlaIII	CATG	9 cut(s)	54, 85, 206, 251, 579, 630, 644, 657, 685
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	206
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	2 cut(s)	121, 655
PagI	TCATGA	2 cut(s)	247, 640
PfeI	GAWTC	2 cut(s)	131, 631
PkrI	GCNGC	3 cut(s)	16, 19, 373
PleI	GAGTC	2 cut(s)	69, 479
PpsI	GAGTC	2 cut(s)	69, 479
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	410
PspOMI	GGGCCC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	47, 408, 409
PstNI	CAGNNNCTG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	246, 645
SaqAI	TTAA	3 cut(s)	96, 176, 198
SatI	GCNGC	3 cut(s)	15, 18, 372
Sau3AI	GATC	5 cut(s)	103, 312, 472, 478, 529
Sau96I	GGNCC	3 cut(s)	47, 408, 409
SchI	GAGTC	2 cut(s)	69, 479
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	8 cut(s)	22, 31, 49, 113, 139, 167, 511, 563
SfaNI	GCATC	4 cut(s)	106, 358, 383, 640
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	246, 645
SmlI	CTYRAG	2 cut(s)	95, 197
SmoI	CTYRAG	2 cut(s)	95, 197
Sse9I	AATT	3 cut(s)	231, 354, 599
SsiI	CCGC	2 cut(s)	169, 187
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	50, 126
TaqI	TCGA	3 cut(s)	219, 401, 605
TasI	AATT	3 cut(s)	231, 354, 599
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	131, 631
Tru1I	TTAA	3 cut(s)	96, 176, 198
Tru9I	TTAA	3 cut(s)	96, 176, 198
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	14, 17, 371
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	6 cut(s)	24, 84, 230, 236, 264, 585
Vha464I	CTTAAG	2 cut(s)	95, 197
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	2 cut(s)	121, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.