Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Reverse (-)

33597721 .. 33598622

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTTATGAAGCAGCAACTGTGGAAGGTGAAAAACTGCGCAAAGGTCCATGGCTAGAAGAGGAAGATGAACGACTCACCATGTATGTAAGACTTAAGGGGGATCGGAGGTGGGATGCATTAGCCAAGGAATCAGGTCTAAGGAGAAGTGGTAGGAGTTGCAGGTTGCGGTGGTTGAACTATCTCCGCCCCGATCTTAAGCATGGTCACATTTCTGTCGAAGAAGAGAAAATTATCCTTCAACTTCATGAACTTTGGGGTAACAAGTGGTCAAAGATTGCAAGAGTGTTGCCAGGAAGAACTGATAATGAGATCAAGAACTACTGGAGGACACATTTAGTGAAGAAAGCACAAATTCAAGATGGTGATGCTGCATCTGCCGGAAACTTGCCATGTACGTCGAAAAGGGCCCAACAGAGTCTTTTCTTTCAGGATGGTGATGATATGAGTGCTGAAAAAAAATATAACTTTGATCAAGATCAGGACTCAGTTGAGAATTTATGGGGAGCTAAGGAAACTTACTCTGATGATCTCTGTTTATCGGACTTTGCCTTGCCAAGCTCTCCATATGAAACGCGGTTATCAGATTGGATATCTGAATTATCGAGTGAAAAAAGTGGTATAACATGGATTCCACATCATCATAGTGATGCATGGGATTGTTCAAGTTCCCTCTGGGACATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

230

Amino Acids

26.57

Weight (kDa)

5.56

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	1.8e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 113	5.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 116	8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	153
AccII	CGCG	1 cut(s)	577
AciI	CCGC	3 cut(s)	169, 187, 577
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	354, 496
AfaI	GTAC	1 cut(s)	397
AflII	CTTAAG	2 cut(s)	95, 197
AgsI	TTSAA	4 cut(s)	178, 242, 359, 666
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	509, 561
AluI	AGCT	2 cut(s)	509, 561
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	408
ApaI	GGGCCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	14, 371
ApoI	RAATTY	2 cut(s)	354, 496
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	47, 408, 409
AsuHPI	GGTGA	4 cut(s)	41, 70, 377, 449
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	26, 358
BccI	CCATC	2 cut(s)	356, 428
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	1 cut(s)	56
BfrI	CTTAAG	2 cut(s)	95, 197
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	2 cut(s)	15, 372
BlsI	GCNGC	2 cut(s)	16, 373
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	47, 408, 409
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	106, 358, 383, 640
BpmI	CTGGAG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	50, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	50, 126
BseGI	GGATG	2 cut(s)	121, 439
BseJI	GATNNNNATC	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	26, 358
Bsh1236I	CGCG	1 cut(s)	577
BshFI	GGCC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	381
BsnI	GGCC	1 cut(s)	410
Bsp120I	GGGCCC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
Bsp19I	CCATGG	1 cut(s)	50
BspACI	CCGC	3 cut(s)	169, 187, 577
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	111
BspTI	CTTAAG	2 cut(s)	95, 197
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	50, 126
BssMI	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
BssT1I	CCWWGG	2 cut(s)	50, 126
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	54, 219
BstAFI	CTTAAG	2 cut(s)	95, 197
BstDEI	CTNAG	3 cut(s)	140, 487, 510
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	121, 439
BstFNI	CGCG	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	6 cut(s)	106, 196, 315, 475, 481, 532
BstMBI	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 377
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	26, 358
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	121, 439
BveI	ACCTGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	47, 408, 409
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	8 cut(s)	51, 82, 203, 248, 393, 627, 654, 682
CviJI	RGCY	6 cut(s)	5, 55, 125, 410, 509, 561
CviKI_1	RGCY	6 cut(s)	5, 55, 125, 410, 509, 561
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	140, 487, 510
DpnI	GATC	6 cut(s)	105, 195, 314, 474, 480, 531
DpnII	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
Eam1104I	CTCTTC	2 cut(s)	54, 219
EarI	CTCTTC	2 cut(s)	54, 219
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	50, 126
Eco24I	GRGCYC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	50, 126
EcoT22I	ATGCAT	2 cut(s)	121, 655
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	50, 126
FaeI	CATG	8 cut(s)	54, 85, 206, 251, 396, 630, 657, 685
FatI	CATG	8 cut(s)	50, 81, 202, 247, 392, 626, 653, 681
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	15, 372
FokI	GGATG	2 cut(s)	128, 446
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	15, 372
FspBI	CTAG	1 cut(s)	56
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	15, 372
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	8 cut(s)	54, 85, 206, 251, 396, 630, 657, 685
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	5 cut(s)	75, 131, 418, 485, 631
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	4 cut(s)	41, 70, 377, 449
Hpy188I	TCNGA	5 cut(s)	108, 526, 544, 586, 598
Hpy188III	TCNNGA	6 cut(s)	248, 316, 359, 431, 476, 482
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	20, 248
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	5 cut(s)	119, 162, 281, 374, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 377
HpyF3I	CTNAG	3 cut(s)	140, 487, 510
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	8 cut(s)	54, 85, 206, 251, 396, 630, 657, 685
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	9 cut(s)	120, 148, 279, 306, 310, 394, 416, 467, 661
Lsp1109I	GCAGC	2 cut(s)	26, 358
LweI	GCATC	4 cut(s)	106, 358, 383, 640
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	206, 260
MalI	GATC	6 cut(s)	105, 195, 314, 474, 480, 531
MboI	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
MboII	GAAGA	6 cut(s)	71, 77, 233, 236, 309, 355
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	4 cut(s)	231, 354, 496, 599
MlyI	GAGTC	3 cut(s)	69, 427, 479
MnlI	CCTC	4 cut(s)	55, 102, 321, 683
Mph1103I	ATGCAT	2 cut(s)	121, 655
MseI	TTAA	2 cut(s)	96, 198
MslI	CAYNNNNRTG	2 cut(s)	645, 648
MspCI	CTTAAG	2 cut(s)	95, 197
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	11, 377
NcoI	CCATGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
NlaIII	CATG	8 cut(s)	54, 85, 206, 251, 396, 630, 657, 685
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	206
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	2 cut(s)	121, 655
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	131, 631
PkrI	GCNGC	2 cut(s)	16, 373
PleI	GAGTC	3 cut(s)	69, 426, 479
PpsI	GAGTC	3 cut(s)	69, 426, 479
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	410
PspOMI	GGGCCC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	47, 408, 409
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	645, 648
SaqAI	TTAA	2 cut(s)	96, 198
SatI	GCNGC	2 cut(s)	15, 372
Sau3AI	GATC	6 cut(s)	103, 193, 312, 472, 478, 529
Sau96I	GGNCC	3 cut(s)	47, 408, 409
SchI	GAGTC	3 cut(s)	69, 427, 479
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	8 cut(s)	31, 49, 113, 139, 167, 401, 511, 563
SfaNI	GCATC	4 cut(s)	106, 358, 383, 640
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	645, 648
SmlI	CTYRAG	2 cut(s)	95, 197
SmoI	CTYRAG	2 cut(s)	95, 197
Sse9I	AATT	4 cut(s)	231, 354, 496, 599
SsiI	CCGC	3 cut(s)	169, 187, 577
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	50, 126
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	3 cut(s)	219, 401, 605
TasI	AATT	4 cut(s)	231, 354, 496, 599
TfiI	GAWTC	2 cut(s)	131, 631
Tru1I	TTAA	2 cut(s)	96, 198
Tru9I	TTAA	2 cut(s)	96, 198
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	14, 371
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	24, 84, 236, 264, 585
Vha464I	CTTAAG	2 cut(s)	95, 197
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	354, 496
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	2 cut(s)	121, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.