Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Reverse (-)

14802538 .. 14804687

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACTTGTCAAGCAGACATGGAAGGAGAAAAACTGCGCAAAGGTCCATGGCTTGAAGAGGAAGATGAACGACTCACAGGCTACGTAAATCTAAATGGAAATTGGAGGTGGGATGCTTTAGCGAAAGAATCAGGTCTAAGGAGGAGTGGTAGGAGTTGCAGGATGAGGTGGTTGAACTATCTCCGTCCAAATCTTAAGCATGGACATATCACTGTCGAAGAAGAGAAAATAATCCTTCATCTTCATGAACGATGGGGCAACAAGTGGTCGAAGATTGCTCGAATGCTTCCAGGAAGAACCGATAATGAGATCAAGAATTACTGGAGGACATATTTAAAGAAGAAAGAACCAATTCAAGATGGAAACTTCCAATGTACATCAAAGAAAGGCCAGCAAAGTCTTTTCTTTCAGGAAGGTGATATGAGTGCTGAAAAACAGTACAACTTTAATCAACACCATGACTCTGTTTCAAATTTATGTGGAGCCAAGGATACTTGCTTTGATGATCTTGGTTTATCAGAATTTGCATTGACAAATTCTCTGTACGAAACCAGGTTATCAGATTGGATATCCGAATTATCAAGCGAACAAAGTGGAATAAACTATAATCAGGACTGTAACAGTGTAGAGTCAGATTTGTGTCATCTGACATGGACTCCAGATGATAGCAATAGATGGGAGTGTCCATGTTTCCTCTGGGACATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

237

Amino Acids

27.79

Weight (kDa)

5.56

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	38
AcsI	RAATTY	3 cut(s)	472, 521, 535
AfaI	GTAC	3 cut(s)	376, 440, 545
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	56, 175, 356, 471
AjnI	CCWGG	2 cut(s)	289, 551
AoxI	GGCC	1 cut(s)	388
ApoI	RAATTY	3 cut(s)	472, 521, 535
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	44
BccI	CCATC	3 cut(s)	246, 353, 669
BciT130I	CCWGG	2 cut(s)	291, 553
BciVI	GTATCC	1 cut(s)	484
BfrI	CTTAAG	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	484
Bme1390I	CCNGG	2 cut(s)	291, 553
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	2 cut(s)	291, 553
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	2 cut(s)	343, 642
BsaAI	YACGTR	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	47, 486
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 640, 670
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	291, 553
BseDI	CCNNGG	2 cut(s)	47, 486
BseGI	GGATG	2 cut(s)	118, 168
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	390
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	309, 505
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	47, 486
BssMI	GATC	2 cut(s)	309, 505
BssT1I	CCWWGG	2 cut(s)	47, 486
Bst2UI	CCWGG	2 cut(s)	291, 553
Bst4CI	ACNGT	4 cut(s)	214, 438, 617, 623
Bst6I	CTCTTC	2 cut(s)	51, 216
BstAFI	CTTAAG	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	118, 168
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	312, 508
BstMBI	GATC	2 cut(s)	309, 505
BstNI	CCWGG	2 cut(s)	291, 553
BstSCI	CCNGG	2 cut(s)	289, 551
BstSNI	TACGTA	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	118, 168
BtsIMutI	CAGTG	2 cut(s)	210, 628
Cac8I	GCNNGC	1 cut(s)	392
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	375, 439, 544
CviAII	CATG	8 cut(s)	19, 48, 200, 245, 458, 651, 687, 703
CviJI	RGCY	4 cut(s)	52, 81, 390, 485
CviKI_1	RGCY	4 cut(s)	52, 81, 390, 485
CviQI	GTAC	3 cut(s)	375, 439, 544
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	311, 507
DpnII	GATC	2 cut(s)	309, 505
DraI	TTTAAA	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	51, 216
EarI	CTCTTC	2 cut(s)	51, 216
Eco105I	TACGTA	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	47, 486
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	289, 551
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	47, 486
ErhI	CCWWGG	2 cut(s)	47, 486
FaeI	CATG	8 cut(s)	22, 51, 203, 248, 461, 654, 690, 706
FatI	CATG	8 cut(s)	18, 47, 199, 244, 457, 650, 686, 702
FokI	GGATG	2 cut(s)	125, 175
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	1 cut(s)	38
GsuI	CTGGAG	2 cut(s)	343, 642
HaeIII	GGCC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	8 cut(s)	22, 51, 203, 248, 461, 654, 690, 706
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	5 cut(s)	72, 128, 461, 629, 655
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	5 cut(s)	520, 562, 574, 634, 648
Hpy188III	TCNNGA	6 cut(s)	245, 313, 356, 410, 611, 659
HpyAV	CCTTC	3 cut(s)	17, 245, 407
HpyCH4III	ACNGT	4 cut(s)	214, 438, 617, 623
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	159, 527
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	8 cut(s)	22, 51, 203, 248, 461, 654, 690, 706
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	309, 505
LmnI	GCTCC	1 cut(s)	482
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	551
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	2 cut(s)	311, 507
MboI	GATC	2 cut(s)	309, 505
MboII	GAAGA	8 cut(s)	68, 74, 230, 233, 233, 283, 306, 352
MluCI	AATT	7 cut(s)	100, 316, 351, 472, 521, 535, 575
MlyI	GAGTC	4 cut(s)	66, 455, 638, 649
MnlI	CCTC	6 cut(s)	52, 99, 135, 159, 318, 704
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	3 cut(s)	195, 335, 447
MslI	CAYNNNNRTG	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	291, 553
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	291, 553
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	309, 505
NlaIII	CATG	8 cut(s)	22, 51, 203, 248, 461, 654, 690, 706
NlaIV	GGNNCC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	289
PleI	GAGTC	4 cut(s)	66, 455, 637, 649
PpsI	GAGTC	4 cut(s)	66, 455, 637, 649
Ppu21I	YACGTR	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	289, 551
PspGI	CCWGG	2 cut(s)	289, 551
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	3 cut(s)	376, 440, 545
RsaNI	GTAC	3 cut(s)	375, 439, 544
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	195, 335, 447
Sau3AI	GATC	2 cut(s)	309, 505
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	4 cut(s)	66, 455, 638, 649
ScrFI	CCNGG	2 cut(s)	291, 553
SetI	ASST	7 cut(s)	46, 87, 110, 136, 170, 418, 557
SexAI	ACCWGGT	1 cut(s)	551
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SnaBI	TACGTA	1 cut(s)	85
Sse9I	AATT	7 cut(s)	100, 316, 351, 472, 521, 535, 575
StyD4I	CCNGG	2 cut(s)	289, 551
StyI	CCWWGG	2 cut(s)	47, 486
TaaI	ACNGT	4 cut(s)	214, 438, 617, 623
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	216, 269, 280
TasI	AATT	7 cut(s)	100, 316, 351, 472, 521, 535, 575
TatI	WGTACW	2 cut(s)	374, 438
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	195, 335, 447
Tru9I	TTAA	3 cut(s)	195, 335, 447
TscAI	CASTG	2 cut(s)	217, 628
TspDTI	ATGAA	4 cut(s)	81, 227, 233, 261
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	217, 628
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	472, 521, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.