Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Reverse (-)

17152448 .. 17155141

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1108400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATGACTTGTCAAGCAGCCATGGATGGAGAGAAACTGCGTAAAGGTCCGTGGCTCGAAGAGGAAGATGAACGACTCACCACCGTTGTAAACCTTAAGGGGAATCGGAGGTGGGATGCATTAGCGAAGGAATCAGGTCTAAGGAGGAGTGGTAGGAGTTGCAGGATGCGGTGGTTGAACTATCTCCGCCCAAACATTAAGCATGGCCAGATTACCATCATAGAAGAGAAAACCATTCTCCAACTTCATCAACGTTGGGGTAACAAGTGGTCGAAGATTGCCCGAGCGCTGCCAGGAAGAACCGATAATGAGATCAAGAATTACTGGAGAACTCATTTAAAGAAGAAAACACAGATTCCAGATGGAAATTTCCAATGTACATTGAACAAAAACGGACGAGGTCTTTTCTGCCAGGAAGGTGATATGAATAATGAAAAATACGACTTCGATCAAGACCATGACTCCGTTAAGAATTCATGGGAAACCAAGGTTACTAGCTCTGATGATCTTGGTTTATCAGACTTTGCAGTGACAAATTCTCCATATGAAACCCAGTTATCAGATTGGATATCTGAGCTATCAAGTGAACAAAATGGAACAGCCTATAATCAGGACTGTAATAGCGTCGAGTCCGATTTATGTCATCTGACATGGACTCCGGATGATAGTGATACATGGGACTGTCCAAGTTTTCTCTGGGACATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

237

Amino Acids

27.48

Weight (kDa)

5.46

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.3e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 71	4.9e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 113	4.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 117	7.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	2 cut(s)	169, 187
AclI	AACGTT	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	367, 472, 535
AfaI	GTAC	1 cut(s)	379
AfeI	AGCGCT	1 cut(s)	288
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	178, 385
AjnI	CCWGG	2 cut(s)	292, 411
AluBI	AGCT	2 cut(s)	498, 577
AluI	AGCT	2 cut(s)	498, 577
Ama87I	CYCGRG	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	658
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	17, 289
ApoI	RAATTY	3 cut(s)	367, 472, 535
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	70, 431
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	29, 276
BccI	CCATC	3 cut(s)	20, 224, 356
BciT130I	CCWGG	2 cut(s)	294, 413
BfaI	CTAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	18, 290
BlsI	GCNGC	2 cut(s)	19, 291
Bme1390I	CCNGG	2 cut(s)	294, 413
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	294, 413
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	106, 156
BmuI	ACTGGG	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	21, 50, 486
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	8 cut(s)	136, 166, 446, 476, 523, 553, 640, 670
Bse1I	ACTGG	2 cut(s)	329, 553
Bse8I	GATNNNNATC	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	294, 413
BseDI	CCNNGG	3 cut(s)	21, 50, 486
BseGI	GGATG	4 cut(s)	31, 121, 171, 667
BseJI	GATNNNNATC	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	2 cut(s)	329, 553
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	29, 276
BshFI	GGCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	658
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	312, 448, 505
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	169, 187
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	658
BspTI	CTTAAG	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	329, 553
BssECI	CCNNGG	3 cut(s)	21, 50, 486
BssMI	GATC	3 cut(s)	312, 448, 505
BssT1I	CCWWGG	2 cut(s)	21, 486
Bst2UI	CCWGG	2 cut(s)	294, 413
Bst4CI	ACNGT	3 cut(s)	85, 617, 683
Bst6I	CTCTTC	2 cut(s)	54, 219
BstAFI	CTTAAG	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	140, 573
BstDSI	CCRYGG	2 cut(s)	21, 50
BstF5I	GGATG	4 cut(s)	31, 121, 171, 667
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	315, 451, 508
BstMBI	GATC	3 cut(s)	312, 448, 505
BstNI	CCWGG	2 cut(s)	294, 413
BstSCI	CCNGG	2 cut(s)	292, 411
BstV1I	GCAGC	2 cut(s)	29, 276
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	21, 50
BtsCI	GGATG	4 cut(s)	31, 121, 171, 667
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	7 cut(s)	22, 203, 458, 477, 651, 675, 703
CviJI	RGCY	6 cut(s)	20, 55, 207, 498, 577, 602
CviKI_1	RGCY	6 cut(s)	20, 55, 207, 498, 577, 602
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	140, 573
DpnI	GATC	3 cut(s)	314, 450, 507
DpnII	GATC	3 cut(s)	312, 448, 505
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	54, 219
EarI	CTCTTC	2 cut(s)	54, 219
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	21, 486
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	47
Eco47III	AGCGCT	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	292, 411
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	21, 486
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	21, 486
FaeI	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	7 cut(s)	21, 202, 457, 476, 650, 674, 702
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	18, 290
FokI	GGATG	4 cut(s)	38, 128, 178, 674
Fsp4HI	GCNGC	2 cut(s)	18, 290
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	2 cut(s)	18, 290
GsuI	CTGGAG	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	1 cut(s)	613
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	7 cut(s)	75, 103, 131, 355, 461, 629, 655
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	70, 431
Hpy166II	GTNNAC	2 cut(s)	91, 587
Hpy188I	TCNGA	7 cut(s)	108, 502, 520, 562, 574, 634, 648
Hpy188III	TCNNGA	5 cut(s)	316, 359, 452, 611, 659
Hpy8I	GTNNAC	2 cut(s)	91, 587
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	2 cut(s)	121, 410
HpyCH4III	ACNGT	3 cut(s)	85, 617, 683
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	119, 162, 527
HpyF3I	CTNAG	2 cut(s)	140, 573
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
HspAI	GCGC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	312, 448, 505
Lsp1109I	GCAGC	2 cut(s)	29, 276
LweI	GCATC	2 cut(s)	106, 156
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	260, 490, 529
MalI	GATC	3 cut(s)	314, 450, 507
MboI	GATC	3 cut(s)	312, 448, 505
MboII	GAAGA	6 cut(s)	71, 77, 236, 286, 309, 355
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	5 cut(s)	319, 367, 472, 535, 706
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	4 cut(s)	69, 455, 638, 649
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	55, 102, 138, 392
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	121
MroI	TCCGGA	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	96, 198, 338, 468, 709
Msp20I	TGGCCA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	294, 413
MvaI	CCWGG	2 cut(s)	294, 413
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	312, 448, 505
NlaIII	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	103, 131, 355
PflFI	GACNNNGTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	19, 291
PleI	GAGTC	4 cut(s)	69, 455, 637, 649
PpsI	GAGTC	4 cut(s)	69, 455, 637, 649
Psp1406I	AACGTT	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	292, 411
PspGI	CCWGG	2 cut(s)	292, 411
PspPI	GGNCC	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	5 cut(s)	96, 198, 338, 468, 709
SatI	GCNGC	2 cut(s)	18, 290
Sau3AI	GATC	3 cut(s)	312, 448, 505
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	4 cut(s)	69, 455, 638, 649
ScrFI	CCNGG	2 cut(s)	294, 413
SfaNI	GCATC	2 cut(s)	106, 156
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	5 cut(s)	319, 367, 472, 535, 706
SsiI	CCGC	2 cut(s)	169, 187
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	292, 411
StyI	CCWWGG	2 cut(s)	21, 486
TaaI	ACNGT	3 cut(s)	85, 617, 683
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	4 cut(s)	57, 272, 447, 627
TasI	AATT	5 cut(s)	319, 367, 472, 535, 706
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	3 cut(s)	103, 131, 355
Tru1I	TTAA	5 cut(s)	96, 198, 338, 468, 709
Tru9I	TTAA	5 cut(s)	96, 198, 338, 468, 709
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	17, 289
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	6 cut(s)	84, 236, 440, 447, 465, 561
TspGWI	ACGGA	3 cut(s)	39, 408, 454
TspRI	CASTG	1 cut(s)	534
Tth111I	GACNNNGTC	1 cut(s)	399
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	3 cut(s)	367, 472, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XspI	CTAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.