Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Forward (+)

10562146 .. 10563306

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTTATGAAGCAGCAGCTGTTGAAGGCGAAAACCTGCGCAAAGGTCCATGGCTAGAAGAGGAAGATGAACGACTCACCATGTATGTAAGACTTAAGGGGAATCGGAGGTGGGATGCATTAGCCAAGGAATCAGGTCTAAGGAGAAGTGGTCGGAGTTGTAGGTTGCGGTGGTTGAACTATCTCCGCCCCAATCTTAAGCATGGTCACATTACCGTAGAAGAAGAGAAAATTATCCTTCAGCTTCATGAACTTTGGGGTAACAAGTGGTCGAAGATTGCAAGAATGTTGCCAGGAAGAACTGATAATGAGATCAAGAACTACTGGAGGACACATTTAGTGAAGAAAGCACAAATTCAAGATGGTGATGCTGCATCTGCTGGAAACTTGCAATGTACATCGAACAAGGCCCAACAAGGTTATTTTTTTCAAGAAGGTGGTGATATGAGTGCTGATAAAAAATATGAGTTTGATCAATATCAGGACTCGGTTGAGGATATATGGGGAGCGAGGGAAACTTACTCTGATGATCTCTGTTTATCGGACTTTGCCTTGCCAAGCTCTCCATATGAAACACGGCTATCAGATTGGATATTTGAATTATCAAGTGAGCAAAGTGGCATAACATGGACTTCAGATCATGATACTAATGCGTGGGATTGTTCAAGTTCCCTCTGGGACATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

230

Amino Acids

26.62

Weight (kDa)

5.15

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	3.8e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	3.8e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	1.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 116	2.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	45
AciI	CCGC	2 cut(s)	169, 187
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	2 cut(s)	224, 618
AfaI	GTAC	1 cut(s)	397
AflII	CTTAAG	2 cut(s)	95, 197
AgsI	TTSAA	6 cut(s)	26, 178, 359, 431, 599, 666
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	20, 244, 561
AluI	AGCT	3 cut(s)	20, 244, 561
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	14, 17, 371
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	47, 409
AsuHPI	GGTGA	3 cut(s)	70, 377, 452
AvaII	GGWCC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	26, 29, 358
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	593
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	1 cut(s)	56
BfrI	CTTAAG	2 cut(s)	95, 197
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	15, 18, 372
BlsI	GCNGC	3 cut(s)	16, 19, 373
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 409
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	106, 358, 383
BpmI	CTGGAG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	50, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	50, 126
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	26, 29, 358
BshFI	GGCC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	312, 472, 529, 637
Bsp19I	CCATGG	1 cut(s)	50
BspACI	CCGC	2 cut(s)	169, 187
BspANI	GGCC	1 cut(s)	410
BspHI	TCATGA	2 cut(s)	247, 640
BspMI	ACCTGC	1 cut(s)	45
BspTI	CTTAAG	2 cut(s)	95, 197
BsrDI	GCAATG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	50, 126
BssMI	GATC	4 cut(s)	312, 472, 529, 637
BssT1I	CCWWGG	2 cut(s)	50, 126
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	54, 219
BstAFI	CTTAAG	2 cut(s)	95, 197
BstAUI	TGTACA	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	315, 475, 532, 640
BstMBI	GATC	4 cut(s)	312, 472, 529, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 377
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	26, 29, 358
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	2 cut(s)	247, 640
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	47, 409
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	7 cut(s)	51, 82, 203, 248, 627, 641, 682
CviJI	RGCY	8 cut(s)	5, 20, 55, 125, 244, 410, 561, 580
CviKI_1	RGCY	8 cut(s)	5, 20, 55, 125, 244, 410, 561, 580
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	314, 474, 531, 639
DpnII	GATC	4 cut(s)	312, 472, 529, 637
Eam1104I	CTCTTC	2 cut(s)	54, 219
EarI	CTCTTC	2 cut(s)	54, 219
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	50, 126
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	224, 618
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	50, 126
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	50, 126
FaeI	CATG	7 cut(s)	54, 85, 206, 251, 630, 644, 685
FatI	CATG	7 cut(s)	50, 81, 202, 247, 626, 640, 681
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	15, 18, 372
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	15, 18, 372
FspBI	CTAG	1 cut(s)	56
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	15, 18, 372
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	54, 85, 206, 251, 630, 644, 685
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	75, 103, 131, 485
HphI	GGTGA	3 cut(s)	70, 377, 452
Hpy188I	TCNGA	6 cut(s)	108, 156, 526, 544, 586, 637
Hpy188III	TCNNGA	6 cut(s)	248, 316, 359, 431, 482, 641
HpyAV	CCTTC	3 cut(s)	20, 248, 428
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	119, 281, 374, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 377
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	7 cut(s)	54, 85, 206, 251, 630, 644, 685
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	312, 472, 529, 637
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	8 cut(s)	50, 120, 279, 306, 310, 366, 467, 661
Lsp1109I	GCAGC	3 cut(s)	26, 29, 358
LweI	GCATC	3 cut(s)	106, 358, 383
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	206, 260
MalI	GATC	4 cut(s)	314, 474, 531, 639
MboI	GATC	4 cut(s)	312, 472, 529, 637
MboII	GAAGA	7 cut(s)	71, 77, 233, 236, 286, 309, 355
MluCI	AATT	3 cut(s)	231, 354, 599
MlyI	GAGTC	2 cut(s)	69, 479
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	55, 102, 321, 487, 504, 683
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	2 cut(s)	96, 198
MspA1I	CMGCKG	1 cut(s)	20
MspCI	CTTAAG	2 cut(s)	95, 197
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	11, 377
NcoI	CCATGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	4 cut(s)	312, 472, 529, 637
NlaIII	CATG	7 cut(s)	54, 85, 206, 251, 630, 644, 685
NmuCI	GTSAC	1 cut(s)	206
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	121
PagI	TCATGA	2 cut(s)	247, 640
PfeI	GAWTC	2 cut(s)	103, 131
PkrI	GCNGC	3 cut(s)	16, 19, 373
PleI	GAGTC	2 cut(s)	69, 479
PpsI	GAGTC	2 cut(s)	69, 479
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	47, 409
PstNI	CAGNNNCTG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	96, 198
SatI	GCNGC	3 cut(s)	15, 18, 372
Sau3AI	GATC	4 cut(s)	312, 472, 529, 637
Sau96I	GGNCC	2 cut(s)	47, 409
SchI	GAGTC	2 cut(s)	69, 479
ScrFI	CCNGG	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	106, 358, 383
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	95, 197
SmoI	CTYRAG	2 cut(s)	95, 197
Sse9I	AATT	3 cut(s)	231, 354, 599
SsiI	CCGC	2 cut(s)	169, 187
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	50, 126
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	272, 401
TasI	AATT	3 cut(s)	231, 354, 599
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	103, 131
Tru1I	TTAA	2 cut(s)	96, 198
Tru9I	TTAA	2 cut(s)	96, 198
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	14, 17, 371
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	24, 84, 236, 264, 585
Vha464I	CTTAAG	2 cut(s)	95, 197
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	354
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.