Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Reverse (-)

12929165 .. 12930236

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATGGCTTGTCAAGCGGCCATGGACGGAGAGAAACTGCATAAAGGTCTGTGGCTCGAAGAGGAAGATGAACGACTCACCACCTTTGTAAACCTTAAGGGGAATCGGAGGTGGGATGCATTAGCTAAGGAATCAGGTCTAAGGAGGAGTGGTAGGAGTTGCAGGATGCGGTGGTTGAACTATCTCCGCCCAAACGTTAAGCATGGCCAGATTACCATCATAGAAGAGAAAACCATTCTCCAACTTCATCAACGTTGGGGTAACAAGTGGTCGAAGATTGCCCGAGCGCTGCCAGGAAGAACCGATAATGAGATCAAGAATTACTGGAGAACTCATTTAAAGAAGAAAACACAGATTCCAGATGGAAATTTCCAATGTACATTGAACAAAAACGGACGAGGTCTTTTCTGCCAGGAAGGTGATATGAATAATGAAAAATACGACTTCGATCAAGACCATGACTCCGTTAAGAATTCATGGGAAACCAAGGTTACTATCTCTGATGATCTTGGTTTATCAGACTTTGCAGTGACAAATTCTCCATATGAAACCCAGTTATCAGATTGGATATCTGAGCTATCAAGTGAACAAAATGGAACAGCCTGTAATCAGGACTGTAATAGCGTCGAGTCCGATTTATGTCATCTGACATGGACTCCGGATGATAGTGATACATGGGACTGTCCAAGTTTTCTCTGGGACATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

237

Amino Acids

27.44

Weight (kDa)

5.43

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	3 cut(s)	17, 169, 187
AclI	AACGTT	2 cut(s)	195, 253
AcoI	YGGCCR	2 cut(s)	18, 205
AcsI	RAATTY	3 cut(s)	367, 472, 535
AfaI	GTAC	1 cut(s)	379
AfeI	AGCGCT	1 cut(s)	288
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	178, 385
AjnI	CCWGG	2 cut(s)	292, 411
AluBI	AGCT	2 cut(s)	125, 577
AluI	AGCT	2 cut(s)	125, 577
Ama87I	CYCGRG	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	658
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	2 cut(s)	18, 205
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	3 cut(s)	367, 472, 535
AspLEI	GCGC	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	70, 431
AvaI	CYCGRG	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	224, 356
BciT130I	CCWGG	2 cut(s)	294, 413
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	18, 290
BlsI	GCNGC	2 cut(s)	19, 291
Bme1390I	CCNGG	2 cut(s)	294, 413
BmeT110I	CYCGRG	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	294, 413
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	106, 156
BmuI	ACTGGG	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	21, 486
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	8 cut(s)	136, 166, 446, 476, 523, 553, 640, 670
Bse1I	ACTGG	2 cut(s)	329, 553
Bse8I	GATNNNNATC	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	294, 413
BseDI	CCNNGG	2 cut(s)	21, 486
BseGI	GGATG	3 cut(s)	121, 171, 667
BseJI	GATNNNNATC	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	2 cut(s)	329, 553
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	2 cut(s)	20, 207
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	20, 207
BsoBI	CYCGRG	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	658
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	312, 448, 505
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	17, 169, 187
BspANI	GGCC	2 cut(s)	20, 207
BspCNI	CTCAG	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	658
BspTI	CTTAAG	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	329, 553
BssECI	CCNNGG	2 cut(s)	21, 486
BssMI	GATC	3 cut(s)	312, 448, 505
BssT1I	CCWWGG	2 cut(s)	21, 486
Bst2UI	CCWGG	2 cut(s)	294, 413
Bst4CI	ACNGT	2 cut(s)	617, 683
Bst6I	CTCTTC	2 cut(s)	54, 219
BstAFI	CTTAAG	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	126, 140, 573
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	121, 171, 667
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	315, 451, 508
BstMBI	GATC	3 cut(s)	312, 448, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	294, 413
BstSCI	CCNGG	2 cut(s)	292, 411
BstV1I	GCAGC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	20, 207
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	121, 171, 667
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
CfoI	GCGC	1 cut(s)	289
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	7 cut(s)	22, 203, 458, 477, 651, 675, 703
CviJI	RGCY	7 cut(s)	8, 20, 55, 125, 207, 577, 602
CviKI_1	RGCY	7 cut(s)	8, 20, 55, 125, 207, 577, 602
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	126, 140, 573
DpnI	GATC	3 cut(s)	314, 450, 507
DpnII	GATC	3 cut(s)	312, 448, 505
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	2 cut(s)	18, 205
Eam1104I	CTCTTC	2 cut(s)	54, 219
EarI	CTCTTC	2 cut(s)	54, 219
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	21, 486
Eco32I	GATATC	1 cut(s)	570
Eco47III	AGCGCT	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	292, 411
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	21, 486
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	21, 486
FaeI	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	7 cut(s)	21, 202, 457, 476, 650, 674, 702
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	18, 290
FokI	GGATG	3 cut(s)	128, 178, 674
Fsp4HI	GCNGC	2 cut(s)	18, 290
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	2 cut(s)	18, 290
GsuI	CTGGAG	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	20, 207
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	1 cut(s)	613
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	7 cut(s)	75, 103, 131, 355, 461, 629, 655
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	70, 431
Hpy166II	GTNNAC	2 cut(s)	91, 587
Hpy188I	TCNGA	7 cut(s)	108, 502, 520, 562, 574, 634, 648
Hpy188III	TCNNGA	5 cut(s)	316, 359, 452, 611, 659
Hpy8I	GTNNAC	2 cut(s)	91, 587
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	617, 683
HpyCH4IV	ACGT	2 cut(s)	195, 253
HpyCH4V	TGCA	4 cut(s)	40, 119, 162, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	126, 140, 573
HpySE526I	ACGT	2 cut(s)	195, 253
Hsp92II	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
HspAI	GCGC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	312, 448, 505
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	106, 156
MaeII	ACGT	2 cut(s)	195, 253
MaeIII	GTNAC	3 cut(s)	260, 490, 529
MalI	GATC	3 cut(s)	314, 450, 507
MboI	GATC	3 cut(s)	312, 448, 505
MboII	GAAGA	6 cut(s)	71, 77, 236, 286, 309, 355
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	5 cut(s)	319, 367, 472, 535, 706
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	4 cut(s)	69, 455, 638, 649
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	55, 102, 138, 392
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	121
MroI	TCCGGA	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	96, 198, 338, 468, 709
Msp20I	TGGCCA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	294, 413
MvaI	CCWGG	2 cut(s)	294, 413
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	312, 448, 505
NlaIII	CATG	7 cut(s)	25, 206, 461, 480, 654, 678, 706
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	103, 131, 355
PflFI	GACNNNGTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	19, 291
PleI	GAGTC	4 cut(s)	69, 455, 637, 649
PpsI	GAGTC	4 cut(s)	69, 455, 637, 649
Psp1406I	AACGTT	2 cut(s)	195, 253
Psp6I	CCWGG	2 cut(s)	292, 411
PspGI	CCWGG	2 cut(s)	292, 411
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	5 cut(s)	96, 198, 338, 468, 709
SatI	GCNGC	2 cut(s)	18, 290
Sau3AI	GATC	3 cut(s)	312, 448, 505
SchI	GAGTC	4 cut(s)	69, 455, 638, 649
ScrFI	CCNGG	2 cut(s)	294, 413
SfaNI	GCATC	2 cut(s)	106, 156
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	5 cut(s)	319, 367, 472, 535, 706
SsiI	CCGC	3 cut(s)	17, 169, 187
StyD4I	CCNGG	2 cut(s)	292, 411
StyI	CCWWGG	2 cut(s)	21, 486
TaaI	ACNGT	2 cut(s)	617, 683
TaiI	ACGT	2 cut(s)	198, 256
TaqI	TCGA	4 cut(s)	57, 272, 447, 627
TasI	AATT	5 cut(s)	319, 367, 472, 535, 706
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	103, 131, 355
Tru1I	TTAA	5 cut(s)	96, 198, 338, 468, 709
Tru9I	TTAA	5 cut(s)	96, 198, 338, 468, 709
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	6 cut(s)	84, 236, 440, 447, 465, 561
TspGWI	ACGGA	3 cut(s)	42, 408, 454
TspRI	CASTG	1 cut(s)	534
Tth111I	GACNNNGTC	1 cut(s)	399
Vha464I	CTTAAG	1 cut(s)	95
XapI	RAATTY	3 cut(s)	367, 472, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.