Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Forward (+)

15615897 .. 15616962

Gene Structure 1066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAGTTATGTAAGCCAAAGGTGGAGTTCCCACAAACTAGTGTTGTCCACCTAGTGTACCATCTAAGAGATTCTCATCACTCTTCTGTGGAAGGTGAAAAACTGCGCAAAGGTCCATGGCTAGAAGAGGAAGATGAACGACTCACCATGTATGTAAGACTTAAGGGGGATCGGAGGTGGGATGCATTAGCCAAGGAATCAGGTCTAAGGAGAAGTGGTAGGAGTTGCAGGTTGCGGTGGTTGAACTATCTCCGCCCCAATCTTAAGCATGGTCACATATCTGTCGAAGAAGAGAAAATTATCCTTCATCTTCATGAACTTTGGGGTAACAAGTGGTCAAAGATTGCAAGAGTGTTGCCAGGAAGAACTGATAATGAGATCAAGAACTACTGGAGGACACATTTAGGTCTTTTCTTTCAGGATGGTGATGATATGAGTGCTGAAAAAAAATATTACTTTGATCAAGATCAGGACTCAGTTGAGAAGTTATGGGGAGCTAAGGAAACTTACTCTGATGATCTCTGTTTATCGGACTTTGCCTTGCCAAGCTCTCCATATGAAACATGGTTATCAGATTGGATATCTGAATTATCGAGTGAACAAAGTGGTATAACATGGATTCCACATCATGATAGTGATGCATGGGATTGTTCAAGTTCCCTCTGGGACATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

225

Amino Acids

26.59

Weight (kDa)

5.88

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	37 - 84	3.8e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	40 - 98	1.5e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	92 - 135	1.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	94 - 135	1.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	219
AciI	CCGC	2 cut(s)	235, 253
AclWI	GGATC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	59
AflII	CTTAAG	2 cut(s)	161, 263
AgsI	TTSAA	2 cut(s)	244, 654
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	497, 549
AluI	AGCT	2 cut(s)	497, 549
AlwI	GGATC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	107, 136, 437
AvaII	GGWCC	1 cut(s)	113
BccI	CCATC	2 cut(s)	69, 416
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	460
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	3 cut(s)	39, 53, 122
BfrI	CTTAAG	2 cut(s)	161, 263
BfuAI	ACCTGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	172, 628
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	498
BsaBI	GATNNNNATC	2 cut(s)	75, 465
BsaJI	CCNNGG	2 cut(s)	116, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bse1I	ACTGG	1 cut(s)	395
Bse8I	GATNNNNATC	2 cut(s)	75, 465
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	116, 192
BseGI	GGATG	2 cut(s)	187, 427
BseJI	GATNNNNATC	2 cut(s)	75, 465
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	169, 378, 460, 466, 517
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	2 cut(s)	235, 253
BspCNI	CTCAG	1 cut(s)	488
BspHI	TCATGA	2 cut(s)	313, 628
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	2 cut(s)	161, 263
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	116, 192
BssMI	GATC	5 cut(s)	169, 378, 460, 466, 517
BssT1I	CCWWGG	2 cut(s)	116, 192
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	3 cut(s)	88, 120, 285
BstAFI	CTTAAG	2 cut(s)	161, 263
BstDEI	CTNAG	4 cut(s)	65, 206, 475, 498
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	187, 427
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	5 cut(s)	172, 381, 463, 469, 520
BstMBI	GATC	5 cut(s)	169, 378, 460, 466, 517
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	187, 427
BveI	ACCTGC	1 cut(s)	219
CciI	TCATGA	2 cut(s)	313, 628
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	9 cut(s)	117, 148, 269, 314, 564, 615, 629, 642, 670
CviJI	RGCY	5 cut(s)	16, 121, 191, 497, 549
CviKI_1	RGCY	5 cut(s)	16, 121, 191, 497, 549
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	65, 206, 475, 498
DpnI	GATC	5 cut(s)	171, 380, 462, 468, 519
DpnII	GATC	5 cut(s)	169, 378, 460, 466, 517
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	3 cut(s)	88, 120, 285
EarI	CTCTTC	3 cut(s)	88, 120, 285
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	116, 192
Eco32I	GATATC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	582
EcoT14I	CCWWGG	2 cut(s)	116, 192
EcoT22I	ATGCAT	2 cut(s)	187, 643
ErhI	CCWWGG	2 cut(s)	116, 192
FaeI	CATG	9 cut(s)	120, 151, 272, 317, 567, 618, 632, 645, 673
FatI	CATG	9 cut(s)	116, 147, 268, 313, 563, 614, 628, 641, 669
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	460
FokI	GGATG	2 cut(s)	194, 434
FspBI	CTAG	3 cut(s)	39, 53, 122
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	412
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	9 cut(s)	120, 151, 272, 317, 567, 618, 632, 645, 673
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	71, 141, 197, 473, 619
HphI	GGTGA	3 cut(s)	107, 136, 437
Hpy166II	GTNNAC	3 cut(s)	49, 58, 599
Hpy188I	TCNGA	5 cut(s)	174, 514, 532, 574, 586
Hpy188III	TCNNGA	6 cut(s)	314, 382, 419, 464, 470, 629
Hpy8I	GTNNAC	3 cut(s)	49, 58, 599
HpyAV	CCTTC	2 cut(s)	86, 314
HpyCH4V	TGCA	4 cut(s)	185, 228, 347, 641
HpyF3I	CTNAG	4 cut(s)	65, 206, 475, 498
Hsp92II	CATG	9 cut(s)	120, 151, 272, 317, 567, 618, 632, 645, 673
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	169, 378, 460, 466, 517
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	8 cut(s)	186, 214, 345, 372, 376, 404, 455, 649
LweI	GCATC	2 cut(s)	172, 628
MaeI	CTAG	3 cut(s)	39, 53, 122
MaeIII	GTNAC	2 cut(s)	272, 326
MalI	GATC	5 cut(s)	171, 380, 462, 468, 519
MboI	GATC	5 cut(s)	169, 378, 460, 466, 517
MboII	GAAGA	7 cut(s)	75, 137, 143, 299, 302, 302, 375
MluCI	AATT	2 cut(s)	297, 587
MlyI	GAGTC	2 cut(s)	135, 467
MnlI	CCTC	4 cut(s)	121, 168, 387, 671
Mph1103I	ATGCAT	2 cut(s)	187, 643
MseI	TTAA	2 cut(s)	162, 264
MslI	CAYNNNNRTG	2 cut(s)	312, 633
MspCI	CTTAAG	2 cut(s)	161, 263
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
NcoI	CCATGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	5 cut(s)	169, 378, 460, 466, 517
NlaIII	CATG	9 cut(s)	120, 151, 272, 317, 567, 618, 632, 645, 673
NmuCI	GTSAC	1 cut(s)	272
NsbI	TGCGCA	1 cut(s)	107
NsiI	ATGCAT	2 cut(s)	187, 643
PagI	TCATGA	2 cut(s)	313, 628
PfeI	GAWTC	3 cut(s)	71, 197, 619
PleI	GAGTC	2 cut(s)	135, 467
PpsI	GAGTC	2 cut(s)	135, 467
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	312, 633
SaqAI	TTAA	2 cut(s)	162, 264
Sau3AI	GATC	5 cut(s)	169, 378, 460, 466, 517
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	135, 467
ScrFI	CCNGG	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	172, 628
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	312, 633
SmlI	CTYRAG	2 cut(s)	161, 263
SmoI	CTYRAG	2 cut(s)	161, 263
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	2 cut(s)	297, 587
SsiI	CCGC	2 cut(s)	235, 253
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	3 cut(s)	39, 53, 122
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	116, 192
TaqI	TCGA	2 cut(s)	285, 593
TasI	AATT	2 cut(s)	297, 587
TfiI	GAWTC	3 cut(s)	71, 197, 619
Tru1I	TTAA	2 cut(s)	162, 264
Tru9I	TTAA	2 cut(s)	162, 264
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	6 cut(s)	17, 150, 296, 302, 330, 573
Vha464I	CTTAAG	2 cut(s)	161, 263
VpaK11BI	GGWCC	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XspI	CTAG	3 cut(s)	39, 53, 122
Zsp2I	ATGCAT	2 cut(s)	187, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.