AT3G53232

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016494
Physical Location & Seq
Reverse (-)
19730774 .. 19731519
746 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53232.1

Sequence Viewer

Length: 174 bp
ATGGGAGAAGAGAACAGCACGAGCGGGACATGCAAGCCGTCCAAGACATTCAAGGCGAAGTGTAGCCACATGGTGAGGAAACAGCGAGCCAAGTTTTACATCCTTGGCCGTTGTCTTGCCATGTTAGTCTGCGGGCGTGGCCGTGACCGCGAGCGTGACCGTATATTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

57

Amino Acids

6.53

Weight (kDa)

10.16

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 26 - 44 2.6e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 24, 132, 148
AcoI YGGCCR 2 cut(s) 106, 139
AdeI CACNNNGTG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 52
AoxI GGCC 2 cut(s) 106, 139
AsuHPI GGTGA 1 cut(s) 85
BauI CACGAG 1 cut(s) 19
BceAI ACGGC 3 cut(s) 22, 93, 126
BsaJI CCNNGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 108, 141
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 2 cut(s) 108, 141
BspACI CCGC 3 cut(s) 24, 132, 148
BspANI GGCC 2 cut(s) 108, 141
BspFNI CGCG 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 103
BssSI CACGAG 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 4 cut(s) 35, 87, 134, 152
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 30, 138, 147
BstNSI RCATGY 1 cut(s) 33
BstUI CGCG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 108, 141
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 35, 87, 134, 152
CviAII CATG 3 cut(s) 30, 70, 121
CviJI RGCY 5 cut(s) 37, 66, 89, 108, 141
CviKI_1 RGCY 5 cut(s) 37, 66, 89, 108, 141
DraIII CACNNNGTG 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 106, 139
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 33, 73, 124
FaiI YATR 4 cut(s) 31, 71, 122, 164
FaqI GGGAC 1 cut(s) 40
FatI CATG 3 cut(s) 29, 69, 120
FauI CCCGC 2 cut(s) 17, 125
FokI GGATG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 108, 141
Hin1II CATG 3 cut(s) 33, 73, 124
HphI GGTGA 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 138, 147
Hsp92II CATG 3 cut(s) 33, 73, 124
MaeIII GTNAC 2 cut(s) 143, 155
MbiI CCGCTC 1 cut(s) 24
MboII GAAGA 1 cut(s) 20
MnlI CCTC 1 cut(s) 69
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 30, 138, 147
NlaIII CATG 3 cut(s) 33, 73, 124
NmuCI GTSAC 2 cut(s) 143, 155
NspI RCATGY 1 cut(s) 33
SsiI CCGC 3 cut(s) 24, 132, 148
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 161
TseFI GTSAC 2 cut(s) 143, 155
Tsp45I GTSAC 2 cut(s) 143, 155
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.