Rroxscaffold_6G00411250

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016494
Physical Location & Seq
Reverse (-)
33768316 .. 33768805
490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411250.1

Sequence Viewer

Length: 219 bp
ATGGCAATGAAGGAAAGTGAAAATACTACTACTACTGCTACAATCACTGCAAGCTTCAATAATAGCACTGGGAATCTGGACAACAATGGCGGATGCGAGCCCTGCAGATCTTTTGGTCAAAAGTGCACTCATCTTATGAAGAAGCAGAGGACCAAATTCTACATCCTCCGACGTTGCATAGCAATGCTTCTCTGCTGGCACGAACGTAACGATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

72

Amino Acids

8.22

Weight (kDa)

8.99

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 47 - 65 8.4e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 155
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw21I GWGCWC 1 cut(s) 128
Alw44I GTGCAC 1 cut(s) 124
AlwI GGATC 1 cut(s) 206
ApaLI GTGCAC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 103
BglII AGATCT 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 2 cut(s) 12, 189
BseGI GGATG 2 cut(s) 98, 162
BseMI GCAATG 2 cut(s) 12, 189
BseNI ACTGG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 102, 128
Bsp143I GATC 2 cut(s) 107, 211
BspACI CCGC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 107
BspPI GGATC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 12, 189
BsrI ACTGG 1 cut(s) 73
BssMI GATC 2 cut(s) 107, 211
BstC8I GCNNGC 3 cut(s) 52, 98, 197
BstF5I GGATG 2 cut(s) 98, 162
BstKTI GATC 2 cut(s) 110, 214
BstMBI GATC 2 cut(s) 107, 211
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BtsCI GGATG 2 cut(s) 98, 162
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 66
Cac8I GCNNGC 3 cut(s) 52, 98, 197
Cfr13I GGNCC 1 cut(s) 150
CviJI RGCY 2 cut(s) 54, 100
CviKI_1 RGCY 2 cut(s) 54, 100
DpnI GATC 2 cut(s) 109, 213
DpnII GATC 2 cut(s) 107, 211
EciI GGCGGA 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 102
FaiI YATR 2 cut(s) 137, 179
FokI GGATG 2 cut(s) 105, 149
FriOI GRGCYC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 4
HpyCH4IV ACGT 2 cut(s) 172, 205
HpyCH4V TGCA 4 cut(s) 50, 105, 126, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 172, 205
Kzo9I GATC 2 cut(s) 107, 211
LpnPI CCDG 4 cut(s) 54, 62, 115, 181
LweI GCATC 1 cut(s) 83
MaeII ACGT 2 cut(s) 172, 205
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 109, 213
MboI GATC 2 cut(s) 107, 211
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 2 cut(s) 102, 128
MluCI AATT 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 2 cut(s) 141, 176
MslI CAYNNNNRTG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 2 cut(s) 107, 211
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 182
Sau3AI GATC 2 cut(s) 107, 211
Sau96I GGNCC 1 cut(s) 150
SduI GDGCHC 2 cut(s) 102, 128
SetI ASST 3 cut(s) 56, 175, 208
SfaNI GCATC 1 cut(s) 83
SfcI CTRYAG 1 cut(s) 103
SgeI CNNG 7 cut(s) 63, 81, 89, 109, 114, 208, 212
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 155
SsiI CCGC 1 cut(s) 90
TaiI ACGT 2 cut(s) 175, 208
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 2 cut(s) 52, 73
TspDTI ATGAA 2 cut(s) 23, 152
TspRI CASTG 2 cut(s) 52, 73
VneI GTGCAC 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.