MD04G1094700.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0016494
Physical Location & Seq
Reverse (-)
17311111 .. 17311350
240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1094700.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGTATCGGCAATCAAGGAAAACGACAGTACTGCTAGTACTACTACCACTATTGCTGCAACGACTACTGCAAGCTTCAATGACAATGTCAATGAAGAGTGTGATAAATCTGGGTGCCGCCGTAGCCGACCCTTCGGAAAAAAGTGCAGCCATCTGGTGAAGAAGCAGCGGACTAAGTTCTACATCCTCCGGCGTTGCATAGCTATGCTTCTCTGCTGGCACGAACGTAGCGACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

9.36

Isoelectric Point (pI)

74.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 54 - 72 9.9e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 114
AciI CCGC 2 cut(s) 118, 169
AfaI GTAC 2 cut(s) 31, 40
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 2 cut(s) 75, 203
AluI AGCT 2 cut(s) 75, 203
ApeKI GCWGC 3 cut(s) 56, 147, 166
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 43, 159, 178
BccI CCATC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BfaI CTAG 1 cut(s) 36
BisI GCNGC 4 cut(s) 57, 118, 148, 167
BlsI GCNGC 4 cut(s) 58, 119, 149, 168
BmcAI AGTACT 2 cut(s) 31, 40
BmiI GGNNCC 1 cut(s) 116
BseGI GGATG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 43, 159, 178
BsgI GTGCAG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 190
BspACI CCGC 2 cut(s) 118, 169
BspLI GGNNCC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 73, 218
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 43, 159, 178
BtsCI GGATG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 73, 218
Csp6I GTAC 2 cut(s) 30, 39
CviJI RGCY 4 cut(s) 75, 126, 150, 203
CviKI_1 RGCY 4 cut(s) 75, 126, 150, 203
CviQI GTAC 2 cut(s) 30, 39
DdeI CTNAG 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
FaiI YATR 2 cut(s) 200, 206
Fnu4HI GCNGC 4 cut(s) 57, 118, 148, 167
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 4 cut(s) 57, 118, 148, 167
FspBI CTAG 1 cut(s) 36
GluI GCNGC 4 cut(s) 57, 118, 148, 167
HapII CCGG 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 4 cut(s) 59, 71, 147, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 226
LpnPI CCDG 4 cut(s) 96, 140, 202, 203
Lsp1109I GCAGC 3 cut(s) 43, 159, 178
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 226
MboII GAAGA 2 cut(s) 107, 172
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIV GGNNCC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 58, 119, 149, 168
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 2 cut(s) 31, 40
RsaNI GTAC 2 cut(s) 30, 39
RseI CAYNNNNRTG 1 cut(s) 203
SatI GCNGC 4 cut(s) 57, 118, 148, 167
ScaI AGTACT 2 cut(s) 31, 40
SchI GAGTC 1 cut(s) 227
SetI ASST 3 cut(s) 77, 205, 229
SgeI CNNG 8 cut(s) 28, 48, 84, 123, 167, 202, 229, 233
SmiMI CAYNNNNRTG 1 cut(s) 203
SsiI CCGC 2 cut(s) 118, 169
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 229
TatI WGTACW 2 cut(s) 29, 38
TauI GCSGC 1 cut(s) 120
TseI GCWGC 3 cut(s) 56, 147, 166
TspDTI ATGAA 1 cut(s) 108
Tth111I GACNNNGTC 1 cut(s) 86
XspI CTAG 1 cut(s) 36
ZrmI AGTACT 2 cut(s) 31, 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.