Prupe.6G233800_v2.0.a1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016494
Physical Location & Seq
Reverse (-)
23563727 .. 23564065
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G233800.1

Sequence Viewer

Length: 339 bp
ATGTGTATATATTTACTGCTCAGTGGGACTAGTAGTGACAAATCTAGAAGCAGTGCAGCAGAAGCTGGTGAGAGTGATCAGACCTTTGAATTTCAAGTCTTCGTCAATATGGCACTGGCGGTGGAGGAAAGCGAAAGTAACACTACTACTAGTACAACTACAAGCTTCAATCAAAATGCGCAGATGAACATGATGAACGGAGAGTGTGAATCCGGCTGCCAGAGGCCGCCGTTCGGGAAAAAGTGCCGTCACCTGTTGAAGAAGCAGCGGACTAAATTCTACATCCTCCGGCGCTGCATAGCAATGCTCCTCTGCTGGCACGAACGTAATGAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

7.59

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
AciI CCGC 3 cut(s) 119, 227, 268
AcsI RAATTY 2 cut(s) 89, 275
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 4 cut(s) 89, 95, 169, 259
AhlI ACTAGT 2 cut(s) 29, 149
AluBI AGCT 2 cut(s) 65, 165
AluI AGCT 2 cut(s) 65, 165
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 4 cut(s) 56, 216, 265, 294
ApoI RAATTY 2 cut(s) 89, 275
AspLEI GCGC 2 cut(s) 181, 294
AsuHPI GGTGA 2 cut(s) 80, 242
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 4 cut(s) 68, 203, 277, 281
BceAI ACGGC 2 cut(s) 214, 231
BclI TGATCA 1 cut(s) 76
BcuI ACTAGT 2 cut(s) 29, 149
BfaI CTAG 3 cut(s) 30, 45, 150
BfoI RGCGCY 1 cut(s) 295
BisI GCNGC 5 cut(s) 57, 217, 227, 266, 295
BlsI GCNGC 5 cut(s) 58, 218, 228, 267, 296
BpiI GAAGAC 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 309
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 4 cut(s) 68, 203, 277, 281
BsgI GTGCAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 213, 289
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 119, 227, 268
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 1 cut(s) 120
BssMI GATC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 2 cut(s) 181, 294
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 68, 203, 277, 281
BstV2I GAAGAC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 3 cut(s) 28, 58, 113
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 2 cut(s) 181, 294
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 65, 165, 216, 226
CviKI_1 RGCY 4 cut(s) 65, 165, 216, 226
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
FaeI CATG 1 cut(s) 193
FaiI YATR 5 cut(s) 8, 10, 110, 191, 299
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 189
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 5 cut(s) 57, 217, 227, 266, 295
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 5 cut(s) 57, 217, 227, 266, 295
FspBI CTAG 3 cut(s) 30, 45, 150
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 2 cut(s) 180, 293
GluI GCNGC 5 cut(s) 57, 217, 227, 266, 295
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 1 cut(s) 226
HapII CCGG 2 cut(s) 213, 289
HhaI GCGC 2 cut(s) 181, 294
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 2 cut(s) 179, 292
HinP1I GCGC 2 cut(s) 179, 292
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 213, 289
HphI GGTGA 2 cut(s) 80, 242
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 45, 235
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 56, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 2 cut(s) 179, 292
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 7 cut(s) 51, 101, 226, 233, 266, 301, 302
Lsp1109I GCAGC 4 cut(s) 68, 203, 277, 281
MaeI CTAG 3 cut(s) 30, 45, 150
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 3 cut(s) 35, 137, 248
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 91, 271
MluCI AATT 2 cut(s) 89, 275
MnlI CCTC 4 cut(s) 118, 216, 296, 320
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 2 cut(s) 213, 289
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 35, 248
NsbI TGCGCA 1 cut(s) 180
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 5 cut(s) 58, 218, 228, 267, 296
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 302
SatI GCNGC 5 cut(s) 57, 217, 227, 266, 295
Sau3AI GATC 1 cut(s) 76
SetI ASST 5 cut(s) 67, 86, 167, 255, 328
SmiMI CAYNNNNRTG 1 cut(s) 302
SpeI ACTAGT 2 cut(s) 29, 149
Sse9I AATT 2 cut(s) 89, 275
SsiI CCGC 3 cut(s) 119, 227, 268
SspMI CTAG 3 cut(s) 30, 45, 150
TaiI ACGT 1 cut(s) 328
TasI AATT 2 cut(s) 89, 275
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 3 cut(s) 28, 58, 120
TseFI GTSAC 2 cut(s) 35, 248
TseI GCWGC 4 cut(s) 56, 216, 265, 294
Tsp45I GTSAC 2 cut(s) 35, 248
TspDTI ATGAA 2 cut(s) 200, 209
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 3 cut(s) 28, 58, 120
XapI RAATTY 2 cut(s) 89, 275
XbaI TCTAGA 1 cut(s) 44
XspI CTAG 3 cut(s) 30, 45, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.