MD12G1114900.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016494
Physical Location & Seq
Reverse (-)
18320812 .. 18321033
222 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1114900.v1.1.491

Sequence Viewer

Length: 222 bp
ATGGCATCGGCAATCAGGGAAAGCGACAGTACTACTTGTACTACTACTGCTACGTCTGCAAGCTTCAATCATAATGTCAATGGGGAGTGTGATAAATCCGGGTGCCGCCGACCGTTCGGAAAAAAGTGCAGCCATCTGGTGAAGAAGCAACGGACTAAGTTCTACATCTTTCGGCGTTGCATAGCTATGCTTCTCTGCTGGCATGAACGTGGTGACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

74

Amino Acids

8.28

Weight (kDa)

9.45

Isoelectric Point (pI)

64.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 48 - 66 8.5e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 1 cut(s) 106
AfaI GTAC 2 cut(s) 31, 40
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 2 cut(s) 63, 185
AluI AGCT 2 cut(s) 63, 185
ApeKI GCWGC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 151
BanI GGYRCC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 141
BcnI CCSGG 1 cut(s) 100
BisI GCNGC 2 cut(s) 106, 130
BlsI GCNGC 2 cut(s) 107, 131
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 29, 114
BstC8I GCNNGC 2 cut(s) 61, 200
BstDEI CTNAG 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 61, 200
Csp6I GTAC 2 cut(s) 30, 39
CviAII CATG 1 cut(s) 203
CviJI RGCY 3 cut(s) 63, 132, 185
CviKI_1 RGCY 3 cut(s) 63, 132, 185
CviQI GTAC 2 cut(s) 30, 39
DdeI CTNAG 1 cut(s) 156
FaeI CATG 1 cut(s) 206
FaiI YATR 4 cut(s) 72, 182, 188, 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 106, 130
Fsp4HI GCNGC 2 cut(s) 106, 130
GluI GCNGC 2 cut(s) 106, 130
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 29, 114
HpyCH4IV ACGT 2 cut(s) 53, 208
HpyCH4V TGCA 3 cut(s) 59, 129, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 53, 208
Hsp92II CATG 1 cut(s) 206
LpnPI CCDG 3 cut(s) 112, 122, 184
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 14
MaeII ACGT 2 cut(s) 53, 208
MaeIII GTNAC 1 cut(s) 212
MboII GAAGA 1 cut(s) 154
MlyI GAGTC 1 cut(s) 209
MslI CAYNNNNRTG 2 cut(s) 185, 207
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 100
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 107, 131
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 104
RsaI GTAC 2 cut(s) 31, 40
RsaNI GTAC 2 cut(s) 30, 39
RseI CAYNNNNRTG 2 cut(s) 185, 207
SatI GCNGC 2 cut(s) 106, 130
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 100
SetI ASST 4 cut(s) 56, 65, 187, 211
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 8 cut(s) 28, 48, 72, 111, 112, 149, 211, 215
SmiMI CAYNNNNRTG 2 cut(s) 185, 207
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 29, 114
TaiI ACGT 2 cut(s) 56, 211
TatI WGTACW 2 cut(s) 29, 38
TauI GCSGC 1 cut(s) 108
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.