Rroxscaffold_4G00293820

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016494
Physical Location & Seq
Forward (+)
14030195 .. 14030428
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293820.1

Sequence Viewer

Length: 234 bp
ATGAAGGAAGACCAAAGCAACAGCAGCAGCAACAGAAACTTCTGCAGTAAGCACGTGCAAGAACAAAGCAGCAGCAACAGCAACAGCAACTTCTGCAGTAAGCACGTGCGAGACCCGTGCAGATCGTTTGGGCGGAGATGCAGTATGCTGGTGAAGGAGCAAAGGGCCAGGTTCTATATACTCCGGCGCTGCATCACCATGTTACTGTGCTGGCGTGAGTGTGGTGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

77

Amino Acids

9.07

Weight (kDa)

9.39

Isoelectric Point (pI)

76.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 52 - 70 1.4e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 221
AcvI CACGTG 2 cut(s) 55, 106
AjnI CCWGG 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 221
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 5 cut(s) 24, 27, 69, 72, 189
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 163, 187
BbrPI CACGTG 2 cut(s) 55, 106
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 36, 39, 81, 84, 176
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 105
BfmI CTRYAG 2 cut(s) 43, 94
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 5 cut(s) 25, 28, 70, 73, 190
BlsI GCNGC 5 cut(s) 26, 29, 71, 74, 191
Bme1390I CCNGG 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 128, 201
BpiI GAAGAC 1 cut(s) 15
BsaAI YACGTR 2 cut(s) 55, 106
BsaI GGTCTC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
BseBI CCWGG 1 cut(s) 169
BseXI GCAGC 5 cut(s) 36, 39, 81, 84, 176
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 122, 226
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 167
BspMAI CTGCAG 2 cut(s) 47, 98
BspPI GGATC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 105
BssMI GATC 2 cut(s) 122, 226
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 93
BstBAI YACGTR 2 cut(s) 55, 106
BstC8I GCNNGC 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 125, 229
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 122, 226
BstMWI GCNNNNNNNGC 3 cut(s) 24, 78, 93
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 2 cut(s) 43, 94
BstV1I GCAGC 5 cut(s) 36, 39, 81, 84, 176
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 165
CviAII CATG 2 cut(s) 199, 231
CviJI RGCY 1 cut(s) 167
CviKI_1 RGCY 1 cut(s) 167
DpnI GATC 2 cut(s) 124, 228
DpnII GATC 2 cut(s) 122, 226
EciI GGCGGA 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 105
Eco72I CACGTG 2 cut(s) 55, 106
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 202, 234
FaiI YATR 5 cut(s) 146, 177, 179, 200, 232
FatI CATG 2 cut(s) 198, 230
Fnu4HI GCNGC 5 cut(s) 25, 28, 70, 73, 190
Fsp4HI GCNGC 5 cut(s) 25, 28, 70, 73, 190
GlaI GCGC 1 cut(s) 188
GluI GCNGC 5 cut(s) 25, 28, 70, 73, 190
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 202, 234
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HpaII CCGG 1 cut(s) 184
HphI GGTGA 2 cut(s) 163, 187
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 54, 105
HpyCH4V TGCA 6 cut(s) 45, 58, 96, 120, 141, 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 78, 93
HpySE526I ACGT 2 cut(s) 54, 105
Hsp92II CATG 2 cut(s) 202, 234
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 122, 226
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 134, 154, 181, 196, 197
Lsp1109I GCAGC 5 cut(s) 36, 39, 81, 84, 176
LweI GCATC 2 cut(s) 128, 201
MaeII ACGT 2 cut(s) 54, 105
MaeIII GTNAC 1 cut(s) 201
MalI GATC 2 cut(s) 124, 228
MboI GATC 2 cut(s) 122, 226
MboII GAAGA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 24, 78, 93
NdeII GATC 2 cut(s) 122, 226
NlaIII CATG 2 cut(s) 202, 234
PkrI GCNGC 5 cut(s) 26, 29, 71, 74, 191
PmaCI CACGTG 2 cut(s) 55, 106
PmlI CACGTG 2 cut(s) 55, 106
Ppu21I YACGTR 2 cut(s) 55, 106
Psp6I CCWGG 1 cut(s) 167
PspCI CACGTG 2 cut(s) 55, 106
PspGI CCWGG 1 cut(s) 167
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 2 cut(s) 47, 98
RseI CAYNNNNRTG 1 cut(s) 197
SatI GCNGC 5 cut(s) 25, 28, 70, 73, 190
Sau3AI GATC 2 cut(s) 122, 226
Sau96I GGNCC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 169
SetI ASST 3 cut(s) 57, 108, 173
SfaNI GCATC 2 cut(s) 128, 201
SfcI CTRYAG 2 cut(s) 43, 94
SmiMI CAYNNNNRTG 1 cut(s) 197
SsiI CCGC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 57, 108
TseI GCWGC 5 cut(s) 24, 27, 69, 72, 189
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.