MD01G1103800.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016494
Physical Location & Seq
Reverse (-)
21622432 .. 21622626
195 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1103800.v1.1.491

Sequence Viewer

Length: 195 bp
ATGAAGCAAGGGCAAGGCGGCAGCGGCAGTGGCAGCAGCAGCAGAACCAACTTCTGTTGTAAGCGTGTTCGAGAGCCGTGTCAATCATTTGGGCGGAGATGCAATATGCTAGTGAAGGAGCAGAGGGCAAGGTTCTATATCCTCAGGCGATGTGTCACAATGCTCCTATGCTGGCATGAGCGTGGTGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

65

Amino Acids

7.39

Weight (kDa)

10.13

Isoelectric Point (pI)

70.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 39 - 57 7e-13 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 24, 94
ApeKI GCWGC 4 cut(s) 21, 33, 36, 39
AxyI CCTNAGG 1 cut(s) 143
BbvI GCAGC 4 cut(s) 33, 45, 48, 51
BceAI ACGGC 1 cut(s) 61
BfaI CTAG 1 cut(s) 110
BisI GCNGC 6 cut(s) 19, 22, 25, 34, 37, 40
BlsI GCNGC 6 cut(s) 20, 23, 26, 35, 38, 41
BmsI GCATC 1 cut(s) 89
Bse21I CCTNAGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 157
BseXI GCAGC 4 cut(s) 33, 45, 48, 51
BspACI CCGC 3 cut(s) 18, 24, 94
BspCNI CTCAG 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 143
BstMWI GCNNNNNNNGC 4 cut(s) 24, 30, 33, 39
BstV1I GCAGC 4 cut(s) 33, 45, 48, 51
Bsu36I CCTNAGG 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 173
CviAII CATG 1 cut(s) 176
CviJI RGCY 1 cut(s) 76
CviKI_1 RGCY 1 cut(s) 76
DdeI CTNAG 1 cut(s) 143
EciI GGCGGA 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 143
FaeI CATG 1 cut(s) 179
FaiI YATR 5 cut(s) 107, 138, 169, 177, 193
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 6 cut(s) 19, 22, 25, 34, 37, 40
Fsp4HI GCNGC 6 cut(s) 19, 22, 25, 34, 37, 40
FspBI CTAG 1 cut(s) 110
GluI GCNGC 6 cut(s) 19, 22, 25, 34, 37, 40
Hin1II CATG 1 cut(s) 179
HinfI GANTC 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 30, 33, 39
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 1 cut(s) 179
LmnI GCTCC 2 cut(s) 118, 168
LpnPI CCDG 2 cut(s) 130, 157
Lsp1109I GCAGC 4 cut(s) 33, 45, 48, 51
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 117, 152
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 24, 30, 33, 39
NlaIII CATG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 6 cut(s) 20, 23, 26, 35, 38, 41
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 6 cut(s) 19, 22, 25, 34, 37, 40
SetI ASST 1 cut(s) 134
SfaNI GCATC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 180
SsiI CCGC 3 cut(s) 18, 24, 94
SspMI CTAG 1 cut(s) 110
TaqI TCGA 1 cut(s) 70
TauI GCSGC 2 cut(s) 21, 27
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 4 cut(s) 21, 33, 36, 39
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 17, 180
TspRI CASTG 1 cut(s) 34
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.