AT3G53830

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007631
Physical Location & Seq
Forward (+)
19940499 .. 19943885
3387 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53830.2

Sequence Viewer

Length: 1275 bp
ATGAATGGGAATATTGTAGGAAAGGTTCCGATTGGGGAATGTAAAGCGACTGTAGTTTACATGTCCGGTTACTTACCAGGAGCTGCGTCGGAGAAATCCCCGATTCTCTCCCCTGTTCCCGTGCGTTTATCGGCGGCTGTTCACGGTGGAGATTCGTGGAAAGATGTATGTGGTGGTGGTTGTGGATTCGCTATGGCTATTTCAGAGAAAGGAAAGCTTATAACTTGGGGTTCTACTGATGATGAAGGACAGAGCTATGTGGCTTCTGGGAAGCATGGGGAAACTCCAGAGCCGTTTCCTCTTCCTACGGAGGCTCCAGTCGTTCAGGCTTCTTCAGGATGGGCACATTGTGCGGTTGTAACAGAGACTGGTGAAGCATTTACTTGGGGTTGGAAGGAGTGCATTCCATCAAAGGATCCTGTTGGAAAGCAGCAGAGTGGCTCAAGTGAGCAAGTGAGTCCAGCATCACAAGGTTCAAATGCGGCTAGTGGTACGACACTACAGAATGAGAACCAAAAGGTAGGGGAGGAATCAGTGAAGCGGAGACGGGTTTCAACTGCCAAAGATGAAACTGAAGGCCATACATCTGGAGGCGACTTCTTTGCTACAACACCTTCACTTGTGAGTGTTGGCCTTGGAGTGAGGATCACCAGTGTTGCTACTGGTGGTCGGCATACGCTGGCATTGTCAGATTTAGGACAGATTTGGGGTTGGGGATATGGAGGCGAAGGTCAACTAGGATTGGGTTCCCGGATTAAAATGGTGTCATCTCCTCATCTAATACCTTGCCTTGAATCAATTGGATCTGGAAAAGAAAGATCTTTCATATTACATCAAGGAGGAACAACAACCACGTCTGCTCAAGCTTCTAGAGAACCTGGTCAGTACATCAAGGCCATTTCATGTGGAGGTCGTCATAGCGCAGCAATTACAGATGCTGGCGGGTTAATAACTTTTGGCTGGGGACTCTATGGACAGTGTGGCCACGGAAACACAAATGACCAGTTAAGGCCCATGGCTGTGTCAGAAGTGAAGAGTGTTCGGATGGAAAGCGTAGCAGCTGGATTGTGGCACACTATTTGCATCTCTAGTGATGGTAAAGTGTATGCCTTCGGTGGAAACCAATTTGGGCAACTGGGAACTGGTACTGATCATGCTGAGATATTACCGAGGTTGCTGGATGGCCAGAATTTGGAGGGCAAACATGCAAAAGCAGTTAGTTGCGGCGCGCGACATAGTGCGGTTTTGGCAGTTGTTTTAACGAGAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

424

Amino Acids

44.01

Weight (kDa)

6.89

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 34 - 133 5.7e-13 RCC1-like domain
WD40_RLD PF25390 230 - 444 1.8e-39 RCC1-like domain
RCC1_2 PF13540 244 - 273 3.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 325 - 354 6.9e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 342 - 390 2e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 379 - 406 5.4e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 393 - 444 6.1e-13 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 1192
AccII CGCG 2 cut(s) 1229, 1231
AciI CCGC 7 cut(s) 134, 353, 482, 541, 942, 1224, 1241
AclWI GGATC 4 cut(s) 410, 423, 653, 811
AcoI YGGCCR 2 cut(s) 982, 1183
AcsI RAATTY 1 cut(s) 1189
AcuI CTGAAG 2 cut(s) 318, 594
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 3 cut(s) 493, 887, 1147
AfiI CCNNNNNNNGG 1 cut(s) 1192
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 3 cut(s) 477, 555, 794
AjiI CACGTC 1 cut(s) 855
AjnI CCWGG 2 cut(s) 76, 877
AluBI AGCT 5 cut(s) 83, 217, 255, 866, 1061
AluI AGCT 5 cut(s) 83, 217, 255, 866, 1061
Alw26I GTCTC 2 cut(s) 359, 538
AlwI GGATC 4 cut(s) 410, 423, 653, 811
AlwNI CAGNNNCTG 3 cut(s) 83, 368, 938
AoxI GGCC 6 cut(s) 577, 631, 894, 982, 1010, 1183
ApeKI GCWGC 4 cut(s) 83, 430, 923, 1058
ApoI RAATTY 1 cut(s) 1189
AspLEI GCGC 3 cut(s) 923, 1229, 1231
AspS9I GGNCC 1 cut(s) 1011
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 2 cut(s) 383, 640
BaeGI GKGCMC 1 cut(s) 346
BalI TGGCCA 2 cut(s) 984, 1185
BamHI GGATCC 1 cut(s) 415
BbvI GCAGC 4 cut(s) 70, 442, 935, 1070
BccI CCATC 5 cut(s) 333, 415, 1039, 1088, 1175
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 2 cut(s) 78, 879
BclI TGATCA 1 cut(s) 1150
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 2 cut(s) 359, 538
BfaI CTAG 4 cut(s) 486, 737, 870, 1089
BfmI CTRYAG 2 cut(s) 51, 500
BglII AGATCT 1 cut(s) 818
BisI GCNGC 7 cut(s) 84, 135, 431, 483, 924, 1059, 1225
BlsI GCNGC 7 cut(s) 85, 136, 432, 484, 925, 1060, 1226
Bme1390I CCNGG 3 cut(s) 78, 751, 879
BmgBI CACGTC 1 cut(s) 855
BmgT120I GGNCC 1 cut(s) 1011
BmiI GGNNCC 4 cut(s) 27, 315, 417, 748
BmrFI CCNGG 3 cut(s) 78, 751, 879
BmrI ACTGGG 1 cut(s) 1145
BmsI GCATC 3 cut(s) 473, 925, 1092
BmuI ACTGGG 1 cut(s) 1145
BpmI CTGGAG 3 cut(s) 270, 300, 609
BpuEI CTTGAG 2 cut(s) 427, 846
BpuMI CCSGG 1 cut(s) 751
BsaJI CCNNGG 4 cut(s) 634, 985, 1014, 1169
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 1192
Bse1I ACTGG 7 cut(s) 317, 373, 651, 667, 1003, 1140, 1147
BseBI CCWGG 2 cut(s) 78, 879
BseDI CCNNGG 4 cut(s) 634, 985, 1014, 1169
BseGI GGATG 3 cut(s) 344, 1050, 1186
BseLI CCNNNNNNNGG 1 cut(s) 1192
BseMII CTCAG 1 cut(s) 1149
BseNI ACTGG 7 cut(s) 317, 373, 651, 667, 1003, 1140, 1147
BsePI GCGCGC 1 cut(s) 1227
BseRI GAGGAG 1 cut(s) 762
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 4 cut(s) 70, 442, 935, 1070
BseYI CCCAGC 1 cut(s) 960
Bsh1236I CGCG 2 cut(s) 1229, 1231
BshFI GGCC 6 cut(s) 579, 633, 896, 984, 1012, 1185
BsiSI CCGG 2 cut(s) 66, 751
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 1 cut(s) 1192
BsmAI GTCTC 2 cut(s) 359, 538
BsmBI CGTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 978
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 6 cut(s) 579, 633, 896, 984, 1012, 1185
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 5 cut(s) 415, 645, 803, 818, 1150
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 7 cut(s) 134, 353, 482, 541, 942, 1224, 1241
BspANI GGCC 6 cut(s) 579, 633, 896, 984, 1012, 1185
BspCNI CTCAG 1 cut(s) 1150
BspFNI CGCG 2 cut(s) 1229, 1231
BspLI GGNNCC 4 cut(s) 27, 315, 417, 748
BspPI GGATC 4 cut(s) 410, 423, 653, 811
BsrI ACTGG 7 cut(s) 317, 373, 651, 667, 1003, 1140, 1147
BssECI CCNNGG 4 cut(s) 634, 985, 1014, 1169
BssHII GCGCGC 1 cut(s) 1227
BssMI GATC 5 cut(s) 415, 645, 803, 818, 1150
BssT1I CCWWGG 2 cut(s) 634, 1014
Bst2UI CCWGG 2 cut(s) 78, 879
Bst4CI ACNGT 3 cut(s) 52, 146, 978
Bst6I CTCTTC 2 cut(s) 306, 1028
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 681, 940, 1229
BstDEI CTNAG 1 cut(s) 1158
BstDSI CCRYGG 2 cut(s) 985, 1014
BstF5I GGATG 3 cut(s) 344, 1050, 1186
BstFNI CGCG 2 cut(s) 1229, 1231
BstHHI GCGC 3 cut(s) 923, 1229, 1231
BstKTI GATC 5 cut(s) 418, 648, 806, 821, 1153
BstMAI GTCTC 2 cut(s) 359, 538
BstMBI GATC 5 cut(s) 415, 645, 803, 818, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 350, 1247
BstNI CCWGG 2 cut(s) 78, 879
BstNSI RCATGY 2 cut(s) 64, 1208
BstSCI CCNGG 3 cut(s) 76, 749, 877
BstSFI CTRYAG 2 cut(s) 51, 500
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 2 cut(s) 1229, 1231
BstV1I GCAGC 4 cut(s) 70, 442, 935, 1070
BstX2I RGATCY 3 cut(s) 415, 803, 818
BstXI CCANNNNNNTGG 1 cut(s) 587
BstYI RGATCY 3 cut(s) 415, 803, 818
BsuRI GGCC 6 cut(s) 579, 633, 896, 984, 1012, 1185
BtgI CCRYGG 2 cut(s) 985, 1014
BtrI CACGTC 1 cut(s) 855
BtsCI GGATG 3 cut(s) 344, 1050, 1186
BtsIMutI CAGTG 3 cut(s) 540, 658, 983
Cac8I GCNNGC 3 cut(s) 681, 940, 1229
CaiI CAGNNNCTG 3 cut(s) 83, 368, 938
CfoI GCGC 3 cut(s) 923, 1229, 1231
Cfr13I GGNCC 1 cut(s) 1011
CseI GACGC 1 cut(s) 75
CsiI ACCWGGT 1 cut(s) 877
Csp6I GTAC 3 cut(s) 492, 886, 1146
CviAII CATG 6 cut(s) 61, 275, 903, 1015, 1154, 1205
CviQI GTAC 3 cut(s) 492, 886, 1146
DdeI CTNAG 1 cut(s) 1158
DpnI GATC 5 cut(s) 417, 647, 805, 820, 1152
DpnII GATC 5 cut(s) 415, 645, 803, 818, 1150
DraIII CACNNNGTG 1 cut(s) 350
EaeI YGGCCR 2 cut(s) 982, 1183
Eam1104I CTCTTC 2 cut(s) 306, 1028
EarI CTCTTC 2 cut(s) 306, 1028
Eco130I CCWWGG 2 cut(s) 634, 1014
Eco57I CTGAAG 2 cut(s) 318, 594
EcoRII CCWGG 2 cut(s) 76, 877
EcoT14I CCWWGG 2 cut(s) 634, 1014
ErhI CCWWGG 2 cut(s) 634, 1014
Esp3I CGTCTC 1 cut(s) 538
FaeI CATG 6 cut(s) 64, 278, 906, 1018, 1157, 1208
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 978
FatI CATG 6 cut(s) 60, 274, 902, 1014, 1153, 1204
FauI CCCGC 1 cut(s) 935
FbaI TGATCA 1 cut(s) 1150
Fnu4HI GCNGC 7 cut(s) 84, 135, 431, 483, 924, 1059, 1225
FokI GGATG 3 cut(s) 351, 1057, 1193
Fsp4HI GCNGC 7 cut(s) 84, 135, 431, 483, 924, 1059, 1225
FspBI CTAG 4 cut(s) 486, 737, 870, 1089
GlaI GCGC 3 cut(s) 922, 1228, 1230
GluI GCNGC 7 cut(s) 84, 135, 431, 483, 924, 1059, 1225
GsaI CCCAGC 1 cut(s) 964
GsuI CTGGAG 3 cut(s) 270, 300, 609
HaeIII GGCC 6 cut(s) 579, 633, 896, 984, 1012, 1185
HapII CCGG 2 cut(s) 66, 751
HgaI GACGC 1 cut(s) 75
HhaI GCGC 3 cut(s) 923, 1229, 1231
Hin1II CATG 6 cut(s) 64, 278, 906, 1018, 1157, 1208
Hin6I GCGC 3 cut(s) 921, 1227, 1229
HinP1I GCGC 3 cut(s) 921, 1227, 1229
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HindIII AAGCTT 2 cut(s) 215, 864
HinfI GANTC 7 cut(s) 103, 152, 186, 457, 530, 794, 966
HpaII CCGG 2 cut(s) 66, 751
HphI GGTGA 2 cut(s) 383, 640
Hpy166II GTNNAC 3 cut(s) 58, 142, 734
Hpy188I TCNGA 6 cut(s) 30, 91, 205, 691, 1027, 1044
Hpy188III TCNNGA 5 cut(s) 287, 336, 588, 807, 870
Hpy8I GTNNAC 3 cut(s) 58, 142, 734
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 6 cut(s) 239, 388, 569, 624, 722, 1120
HpyCH4III ACNGT 3 cut(s) 52, 146, 978
HpyCH4IV ACGT 1 cut(s) 854
HpyCH4V TGCA 3 cut(s) 402, 1083, 1208
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 1247
HpyF3I CTNAG 1 cut(s) 1158
HpySE526I ACGT 1 cut(s) 854
Hsp92II CATG 6 cut(s) 64, 278, 906, 1018, 1157, 1208
HspAI GCGC 3 cut(s) 921, 1227, 1229
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 5 cut(s) 415, 645, 803, 818, 1150
LmnI GCTCC 2 cut(s) 80, 319
Lsp1109I GCAGC 4 cut(s) 70, 442, 935, 1070
LweI GCATC 3 cut(s) 473, 925, 1092
MabI ACCWGGT 1 cut(s) 877
MaeI CTAG 4 cut(s) 486, 737, 870, 1089
MaeII ACGT 1 cut(s) 854
MaeIII GTNAC 2 cut(s) 68, 358
MalI GATC 5 cut(s) 417, 647, 805, 820, 1152
MboI GATC 5 cut(s) 415, 645, 803, 818, 1150
MboII GAAGA 3 cut(s) 293, 324, 1045
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 3 cut(s) 415, 803, 818
MhlI GDGCHC 1 cut(s) 346
MlsI TGGCCA 2 cut(s) 984, 1185
MluCI AATT 4 cut(s) 798, 927, 1124, 1189
MluNI TGGCCA 2 cut(s) 984, 1185
MlyI GAGTC 2 cut(s) 466, 960
MmeI TCCRAC 3 cut(s) 69, 371, 403
Mox20I TGGCCA 2 cut(s) 984, 1185
MscI TGGCCA 2 cut(s) 984, 1185
MseI TTAA 4 cut(s) 756, 947, 1007, 1259
MslI CAYNNNNRTG 1 cut(s) 1019
Msp20I TGGCCA 2 cut(s) 984, 1185
MspA1I CMGCKG 1 cut(s) 1061
MspI CCGG 2 cut(s) 66, 751
MspR9I CCNGG 3 cut(s) 78, 751, 879
MunI CAATTG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 2 cut(s) 78, 879
MvnI CGCG 2 cut(s) 1229, 1231
MwoI GCNNNNNNNGC 2 cut(s) 350, 1247
NciI CCSGG 1 cut(s) 751
NcoI CCATGG 1 cut(s) 1014
NdeII GATC 5 cut(s) 415, 645, 803, 818, 1150
NlaIII CATG 6 cut(s) 64, 278, 906, 1018, 1157, 1208
NlaIV GGNNCC 4 cut(s) 27, 315, 417, 748
NspI RCATGY 2 cut(s) 64, 1208
PauI GCGCGC 1 cut(s) 1227
PciI ACATGT 1 cut(s) 60
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 5 cut(s) 103, 152, 186, 530, 794
PflMI CCANNNNNTGG 1 cut(s) 1192
PfoI TCCNGGA 1 cut(s) 749
PkrI GCNGC 7 cut(s) 85, 136, 432, 484, 925, 1060, 1226
PleI GAGTC 2 cut(s) 465, 960
PpsI GAGTC 2 cut(s) 465, 960
PscI ACATGT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 76, 877
PspFI CCCAGC 1 cut(s) 960
PspGI CCWGG 2 cut(s) 76, 877
PspN4I GGNNCC 4 cut(s) 27, 315, 417, 748
PspPI GGNCC 1 cut(s) 1011
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 3 cut(s) 83, 368, 938
PsuI RGATCY 3 cut(s) 415, 803, 818
PteI GCGCGC 1 cut(s) 1227
PvuII CAGCTG 1 cut(s) 1061
RsaI GTAC 3 cut(s) 493, 887, 1147
RsaNI GTAC 3 cut(s) 492, 886, 1146
RseI CAYNNNNRTG 1 cut(s) 1019
SaqAI TTAA 4 cut(s) 756, 947, 1007, 1259
SatI GCNGC 7 cut(s) 84, 135, 431, 483, 924, 1059, 1225
Sau3AI GATC 5 cut(s) 415, 645, 803, 818, 1150
Sau96I GGNCC 1 cut(s) 1011
SchI GAGTC 2 cut(s) 466, 960
ScrFI CCNGG 3 cut(s) 78, 751, 879
SduI GDGCHC 1 cut(s) 346
SexAI ACCWGGT 1 cut(s) 877
SfaNI GCATC 3 cut(s) 473, 925, 1092
SfcI CTRYAG 2 cut(s) 51, 500
SmiMI CAYNNNNRTG 1 cut(s) 1019
SmlI CTYRAG 2 cut(s) 442, 861
SmoI CTYRAG 2 cut(s) 442, 861
Sse9I AATT 4 cut(s) 798, 927, 1124, 1189
SsiI CCGC 7 cut(s) 134, 353, 482, 541, 942, 1224, 1241
SspI AATATT 1 cut(s) 13
SspMI CTAG 4 cut(s) 486, 737, 870, 1089
StyD4I CCNGG 3 cut(s) 76, 749, 877
StyI CCWWGG 2 cut(s) 634, 1014
TaaI ACNGT 3 cut(s) 52, 146, 978
TaiI ACGT 1 cut(s) 857
TasI AATT 4 cut(s) 798, 927, 1124, 1189
TatI WGTACW 1 cut(s) 885
TauI GCSGC 3 cut(s) 137, 485, 1227
TfiI GAWTC 5 cut(s) 103, 152, 186, 530, 794
Tru1I TTAA 4 cut(s) 756, 947, 1007, 1259
Tru9I TTAA 4 cut(s) 756, 947, 1007, 1259
TscAI CASTG 3 cut(s) 540, 658, 983
TseI GCWGC 4 cut(s) 83, 430, 923, 1058
TspDTI ATGAA 5 cut(s) 17, 258, 582, 814, 891
TspGWI ACGGA 2 cut(s) 323, 1002
TspRI CASTG 3 cut(s) 540, 658, 983
Van91I CCANNNNNTGG 1 cut(s) 1192
XapI RAATTY 1 cut(s) 1189
XbaI TCTAGA 1 cut(s) 869
XceI RCATGY 2 cut(s) 64, 1208
XspI CTAG 4 cut(s) 486, 737, 870, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.