Rh3BG141400

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007631
Physical Location & Seq
Reverse (-)
11966005 .. 11969704
3700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG141400.1

Sequence Viewer

Length: 1230 bp
ATGAGTTATGAATTTAAACTCTTTGGGATTGATTTTGGAGTTTTGTGTATATATGGTGTGAAGGAGACTCCAGGGACATTTCCTCTCCCAACTGAAGTCTCACTGGTCAAGGCTGCTGCTGGTTGGGCCCATTGTGTTTCTGTTACAGAGACTGGTGAAGTATATACATGGGGGTGGAAAGAGTGTGTTCCCTCAGGGAAGGTATTCCATGATTTGGCTCTGGTGGGAAGTATTGAGAAGGATGCTACAACTACCGGGAAACTAAGTTCATTACCAGCTGAACAAGGAAGATCATTGTCTCAAGGCTTCAATTTTAGTGGTGAGACAGTATCTCATCTTGACAGCAAAAGGGCCGGAGAGGAAATTGCAAAGCGAAGGAAAACTTCGTCAGCTAAATTAGAACCTGAAAGCTCAACAGCAGCTGATGAACTCTTCATCGCATCGCCTTGTCTTGTAACAATGGGTCCTGGTGTGAGGATCACTACAGTTGCTGCTGGTGGACGCCACACTTTAGCATTATCAGTTTCAGATATGGGACAGGTTTGGGGTTGGGGCTATGGAGGCGAAGGACAGCTAGGTTTGGGTTCACGGATGAAGATGGTCTCTTCTCCTCATCTCATACCCTGCATCGATCAATCTGCTTCTGGGAAGGACAAGTTTTCTGCAGTATCTCAAGGATCAAAATTTCCTGGAAGTTATGTGAAGGAAATCGCTTGTGGGGGTCGACATAGTGCAGTAATAACAGATGCAGGAGCACTGCTTACTTTTGGCTGGGGCCTGTATGGACAGTGTGGGCAAGGGAATACGAAAGATCAGCTAAAAGTTACTCGTGTGGAGTCATTAGTGGATACTAGAGTGAAAAGTATAGCTGCTGGACTATGGCATACTCTCTGTATATCTGTTGATGGCCGTGTATATGCTTTTGGGGGTAATCAGTTTGGACAATTGGGAACAGGTGCTGAGGAAGCTGAGACTCTACCTAGGCTTCTGAACTCTTCAAGTCTGGAAAATAAGCATGCCAAAGCAGTTTCCTGTGGAGCACGCCATAGTACTATACTGACGGAAGATGGTCAGTTATTTAGCTGGGGATGGAACAAGTATGGGCAGCTTGGTCTGGGTGATTCTGTGGATAGGAACATTCCTTGTCAAGTTTCTATAGATGGCTGCTTGCCTAAGCATATTGCATGTGGCTGGTGGCACACGCTATTGCTGGCGGAAATACCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

409

Amino Acids

43.49

Weight (kDa)

6.6

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 11 - 405 1.5e-62 RCC1-like domain
RCC1_2 PF13540 160 - 191 9.4e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 179 - 247 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 234 - 263 5.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 251 - 299 8.9e-10 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 253 - 321 1.1e-06 Alsin RCC1-like domain
RCC1_2 PF13540 286 - 315 2.8e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 302 - 353 3.3e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 341 - 369 2.1e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 356 - 404 2.2e-15 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 724
AciI CCGC 1 cut(s) 1214
AclWI GGATC 2 cut(s) 485, 685
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 2 cut(s) 11, 683
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 1 cut(s) 1051
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 310, 999
AjnI CCWGG 3 cut(s) 70, 466, 688
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
Alw21I GWGCWC 2 cut(s) 757, 1042
Alw26I GTCTC 7 cut(s) 59, 103, 143, 303, 317, 607, 965
AlwI GGATC 2 cut(s) 485, 685
AlwNI CAGNNNCTG 4 cut(s) 152, 422, 491, 959
AoxI GGCC 4 cut(s) 126, 351, 775, 907
ApaI GGGCCC 1 cut(s) 130
ApeKI GCWGC 7 cut(s) 113, 116, 419, 491, 869, 1105, 1164
ApoI RAATTY 2 cut(s) 11, 683
Asp700I GAANNNNTTC 1 cut(s) 203
AspA2I CCTAGG 1 cut(s) 980
AspS9I GGNCC 5 cut(s) 126, 127, 351, 464, 775
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 167, 332, 1130
AvaII GGWCC 1 cut(s) 464
AvrII CCTAGG 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BanII GRGCYC 1 cut(s) 130
BauI CACGAG 1 cut(s) 828
Bbv12I GWGCWC 2 cut(s) 757, 1042
BbvCI CCTCAGC 1 cut(s) 960
BbvI GCAGC 7 cut(s) 100, 103, 431, 478, 856, 1117, 1151
BccI CCATC 5 cut(s) 592, 899, 1061, 1083, 1154
BceAI ACGGC 1 cut(s) 894
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 3 cut(s) 72, 468, 690
BciVI GTATCC 1 cut(s) 841
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 7 cut(s) 59, 103, 143, 303, 317, 607, 965
BfaI CTAG 3 cut(s) 575, 852, 981
BfmI CTRYAG 3 cut(s) 483, 663, 1155
BfuI GTATCC 1 cut(s) 841
BisI GCNGC 7 cut(s) 114, 117, 420, 492, 870, 1106, 1165
BlnI CCTAGG 1 cut(s) 980
BlsI GCNGC 7 cut(s) 115, 118, 421, 493, 871, 1107, 1166
BmcAI AGTACT 1 cut(s) 1051
Bme1390I CCNGG 4 cut(s) 72, 256, 468, 690
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 5 cut(s) 126, 127, 351, 464, 775
BmiI GGNNCC 3 cut(s) 128, 465, 776
BmrFI CCNGG 4 cut(s) 72, 256, 468, 690
BmsI GCATC 4 cut(s) 232, 449, 636, 736
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 2 cut(s) 960, 1173
BpuEI CTTGAG 2 cut(s) 285, 657
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 502
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 2 cut(s) 71, 980
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 108, 157
Bse21I CCTNAGG 1 cut(s) 193
BseBI CCWGG 3 cut(s) 72, 468, 690
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 71, 980
BseGI GGATG 3 cut(s) 247, 597, 1094
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 207, 951, 960
BseNI ACTGG 2 cut(s) 108, 157
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 7 cut(s) 100, 103, 431, 478, 856, 1117, 1151
BseYI CCCAGC 2 cut(s) 771, 1083
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 4 cut(s) 128, 353, 777, 909
BshVI ATCGAT 1 cut(s) 630
BsiHKAI GWGCWC 2 cut(s) 757, 1042
BsiSI CCGG 2 cut(s) 255, 354
BslFI GGGAC 2 cut(s) 88, 549
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 7 cut(s) 59, 103, 143, 303, 317, 607, 965
BsmFI GGGAC 2 cut(s) 88, 549
BsnI GGCC 4 cut(s) 128, 353, 777, 909
Bso31I GGTCTC 1 cut(s) 607
Bsp120I GGGCCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 130, 757, 1042
Bsp143I GATC 5 cut(s) 290, 477, 631, 677, 811
BspACI CCGC 1 cut(s) 1214
BspANI GGCC 4 cut(s) 128, 353, 777, 909
BspCNI CTCAG 3 cut(s) 206, 952, 961
BspDI ATCGAT 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 128, 465, 776
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 2 cut(s) 485, 685
BspTNI GGTCTC 1 cut(s) 607
BsrI ACTGG 2 cut(s) 108, 157
BssECI CCNNGG 2 cut(s) 71, 980
BssMI GATC 5 cut(s) 290, 477, 631, 677, 811
BssNI GRCGYC 1 cut(s) 502
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 1 cut(s) 980
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 3 cut(s) 72, 468, 690
Bst4CI ACNGT 3 cut(s) 328, 487, 789
Bst6I CTCTTC 3 cut(s) 437, 610, 1000
BstACI GRCGYC 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 1017, 1042, 1169, 1212
BstDEI CTNAG 5 cut(s) 193, 263, 960, 969, 1173
BstF5I GGATG 3 cut(s) 247, 597, 1094
BstKTI GATC 5 cut(s) 293, 480, 634, 680, 814
BstMAI GTCTC 7 cut(s) 59, 103, 143, 303, 317, 607, 965
BstMBI GATC 5 cut(s) 290, 477, 631, 677, 811
BstMWI GCNNNNNNNGC 3 cut(s) 125, 561, 965
BstNI CCWGG 3 cut(s) 72, 468, 690
BstNSI RCATGY 2 cut(s) 1019, 1188
BstSCI CCNGG 4 cut(s) 70, 254, 466, 688
BstSFI CTRYAG 3 cut(s) 483, 663, 1155
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 7 cut(s) 100, 103, 431, 478, 856, 1117, 1151
Bsu15I ATCGAT 1 cut(s) 630
Bsu36I CCTNAGG 1 cut(s) 193
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 4 cut(s) 128, 353, 777, 909
BsuTUI ATCGAT 1 cut(s) 630
BtgZI GCGATG 2 cut(s) 421, 426
BtsCI GGATG 3 cut(s) 247, 597, 1094
BtsI GCAGTG 1 cut(s) 755
BtsIMutI CAGTG 3 cut(s) 101, 755, 794
Cac8I GCNNGC 4 cut(s) 1017, 1042, 1169, 1212
CaiI CAGNNNCTG 4 cut(s) 152, 422, 491, 959
Cfr13I GGNCC 5 cut(s) 126, 127, 351, 464, 775
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 1050
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 4 cut(s) 168, 209, 1016, 1185
CviQI GTAC 1 cut(s) 1050
DdeI CTNAG 5 cut(s) 193, 263, 960, 969, 1173
DpnI GATC 5 cut(s) 292, 479, 633, 679, 813
DpnII GATC 5 cut(s) 290, 477, 631, 677, 811
DraI TTTAAA 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 3 cut(s) 437, 610, 1000
EarI CTCTTC 3 cut(s) 437, 610, 1000
EciI GGCGGA 1 cut(s) 1229
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 193
EcoO109I RGGNCCY 2 cut(s) 464, 775
EcoRII CCWGG 3 cut(s) 70, 466, 688
EcoT14I CCWWGG 1 cut(s) 980
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 980
FaeI CATG 4 cut(s) 171, 212, 1019, 1188
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 2 cut(s) 88, 549
FatI CATG 4 cut(s) 167, 208, 1015, 1184
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 7 cut(s) 114, 117, 420, 492, 870, 1106, 1165
FokI GGATG 3 cut(s) 254, 604, 1101
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 7 cut(s) 114, 117, 420, 492, 870, 1106, 1165
FspBI CTAG 3 cut(s) 575, 852, 981
GluI GCNGC 7 cut(s) 114, 117, 420, 492, 870, 1106, 1165
GsaI CCCAGC 2 cut(s) 775, 1087
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 4 cut(s) 128, 353, 777, 909
HapII CCGG 2 cut(s) 255, 354
HgaI GACGC 1 cut(s) 510
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 4 cut(s) 171, 212, 1019, 1188
HincII GTYRAC 1 cut(s) 725
HindII GTYRAC 1 cut(s) 725
HinfI GANTC 4 cut(s) 67, 836, 973, 1121
HpaII CCGG 2 cut(s) 255, 354
HphI GGTGA 3 cut(s) 167, 332, 1130
Hpy166II GTNNAC 3 cut(s) 500, 587, 725
Hpy188I TCNGA 2 cut(s) 529, 990
Hpy188III TCNNGA 2 cut(s) 338, 1004
Hpy8I GTNNAC 3 cut(s) 500, 587, 725
HpyAV CCTTC 7 cut(s) 55, 193, 232, 369, 560, 643, 697
HpyCH4III ACNGT 3 cut(s) 328, 487, 789
HpyCH4V TGCA 6 cut(s) 368, 627, 665, 734, 749, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 561, 965
HpyF3I CTNAG 5 cut(s) 193, 263, 960, 969, 1173
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 4 cut(s) 171, 212, 1019, 1188
Kzo9I GATC 5 cut(s) 290, 477, 631, 677, 811
LmnI GCTCC 2 cut(s) 752, 1037
Lsp1109I GCAGC 7 cut(s) 100, 103, 431, 478, 856, 1117, 1151
LweI GCATC 4 cut(s) 232, 449, 636, 736
MaeI CTAG 3 cut(s) 575, 852, 981
MaeIII GTNAC 3 cut(s) 142, 454, 823
MalI GATC 5 cut(s) 292, 479, 633, 679, 813
MboI GATC 5 cut(s) 290, 477, 631, 677, 811
MboII GAAGA 6 cut(s) 300, 424, 597, 607, 987, 1076
MfeI CAATTG 1 cut(s) 944
MhlI GDGCHC 3 cut(s) 130, 757, 1042
MluCI AATT 6 cut(s) 11, 310, 363, 395, 683, 944
MlyI GAGTC 3 cut(s) 61, 845, 967
MnlI CCTC 7 cut(s) 93, 202, 352, 468, 554, 621, 955
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 172
MspA1I CMGCKG 2 cut(s) 278, 422
MspI CCGG 2 cut(s) 255, 354
MspR9I CCNGG 4 cut(s) 72, 256, 468, 690
MunI CAATTG 1 cut(s) 944
MvaI CCWGG 3 cut(s) 72, 468, 690
MwoI GCNNNNNNNGC 3 cut(s) 125, 561, 965
NciI CCSGG 1 cut(s) 256
NdeII GATC 5 cut(s) 290, 477, 631, 677, 811
NlaIII CATG 4 cut(s) 171, 212, 1019, 1188
NlaIV GGNNCC 3 cut(s) 128, 465, 776
NspI RCATGY 2 cut(s) 1019, 1188
PaeI GCATGC 1 cut(s) 1019
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 1121
PflMI CCANNNNNTGG 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 7 cut(s) 115, 118, 421, 493, 871, 1107, 1166
PleI GAGTC 3 cut(s) 61, 844, 967
PpsI GAGTC 3 cut(s) 61, 844, 967
PpuMI RGGWCCY 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 70, 466, 688
PspFI CCCAGC 2 cut(s) 771, 1083
PspGI CCWGG 3 cut(s) 70, 466, 688
PspN4I GGNNCC 3 cut(s) 128, 465, 776
PspOMI GGGCCC 1 cut(s) 126
PspPI GGNCC 5 cut(s) 126, 127, 351, 464, 775
PspPPI RGGWCCY 1 cut(s) 464
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 4 cut(s) 152, 422, 491, 959
PvuII CAGCTG 2 cut(s) 278, 422
RsaI GTAC 1 cut(s) 1051
RsaNI GTAC 1 cut(s) 1050
RseI CAYNNNNRTG 1 cut(s) 172
SalI GTCGAC 1 cut(s) 723
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 7 cut(s) 114, 117, 420, 492, 870, 1106, 1165
Sau3AI GATC 5 cut(s) 290, 477, 631, 677, 811
Sau96I GGNCC 5 cut(s) 126, 127, 351, 464, 775
ScaI AGTACT 1 cut(s) 1051
SchI GAGTC 3 cut(s) 61, 845, 967
ScrFI CCNGG 4 cut(s) 72, 256, 468, 690
SduI GDGCHC 3 cut(s) 130, 757, 1042
SfaNI GCATC 4 cut(s) 232, 449, 636, 736
SfcI CTRYAG 3 cut(s) 483, 663, 1155
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 300, 672
SmoI CTYRAG 2 cut(s) 300, 672
SphI GCATGC 1 cut(s) 1019
Sse9I AATT 6 cut(s) 11, 310, 363, 395, 683, 944
SsiI CCGC 1 cut(s) 1214
SspMI CTAG 3 cut(s) 575, 852, 981
StyD4I CCNGG 4 cut(s) 70, 254, 466, 688
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 3 cut(s) 328, 487, 789
TaqI TCGA 2 cut(s) 630, 724
TasI AATT 6 cut(s) 11, 310, 363, 395, 683, 944
TatI WGTACW 1 cut(s) 1049
TfiI GAWTC 1 cut(s) 1121
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 3 cut(s) 108, 762, 794
TseI GCWGC 7 cut(s) 113, 116, 419, 491, 869, 1105, 1164
TspDTI ATGAA 5 cut(s) 24, 258, 424, 441, 608
TspGWI ACGGA 2 cut(s) 604, 1076
TspRI CASTG 3 cut(s) 108, 762, 794
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 2 cut(s) 11, 683
XceI RCATGY 2 cut(s) 1019, 1188
XmaJI CCTAGG 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 3 cut(s) 575, 852, 981
ZrmI AGTACT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.