RLG00000024642

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007631
Physical Location & Seq
Forward (+)
37778766 .. 37781966
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024642

Sequence Viewer

Length: 1287 bp
ATGAACGGGAACGAAGACGTGAAGATGGAGAATCGCAGAGAAGCTTTGGTGTATATGTCGGGATATTTACCGGGAGGCTCGCCGGAAAAGTCGCCGATGCTGTCGCTGGAGCCGGTCCAGTTTCCGAGTCCGATGGACGGTGGAGATTCGTGGAGGGACGTCTGCGGTGGCGGTTGTGGATTCGCTATGGCCATCTCAGCGAGTGGGAAACTGATAACTTGGGGATCGGCGGATGAGGAAGGACAGAGCTACTTGGTTGCGGGGAAGCATGGGGAGACTCCAGGGACATTTCCTCTCCCAACTGAAGTCTCACTGGTCAAGGCTGCTGCTGGTTGGGCCCATTGTGTTTCTGTTACAGAGACTGGTGAAGTATATACATGGGGGTGGAAAGAGTGTGTTCCCTCGGGGAAGGTATTCCATGATTTGGCTTTGGTGGGAAGTATTGAGAAGGATGCTACAACTGCCAGGAAACTAAGTTCATTACCAGCTGAACAAGGAAGATCATTGTCTCAAGGCTTCAATTTTAGTGGTGAGACAGTATCTCATCTTGACAGCAAAAGGGCTGGAGAGGAAATTTCCAAGCGAAGGAAAACTTCATCAGCTAAATTAGAACCTGAAAGCTCAACAGCAGCTGATGAACTCTTCATCGCATCGCCTTGTCTTGTAACAATGGGTCATGGTGTGAGGATCACTACAGTTGCTGCTGGTGGACGCCACACTTTAGCATTATCAGGATCAAAATTTCCTGGAAGTTATGTGAAGGAAATCGCTTGTGGGGGTCGACATAGTGCAGTAATAACAGATGCAGGAGCACTGCTTACTTTTGGCTGGGGCCTGTATGGACAGTGTGGGCAAGGGAATACGAAAGATCAGCTAAAAGTTACTCATGTGGAGTCATTAGTGGATACTAGAGTGAAAAGTATAGCTGCTGGACTATGGCATACTCTCTGTATATCTGTCGATGGCCGTGTATATGCTTTTGGGGGTAATCAGTTTGGACAATTGGGAACAGGTGCTGAGGAAGCTGAGACTCTACCTAGGCTTCTGAACTCTTCAAGTCTGGAAAATAAGCATGCCAAAGCAGTTTCCTGTGGAGCACGCCATAGTACTATACTCACGGAAGATGGTCAGTTATTTAGCTGGGGATGGAACAAGTATGGGCAGCTTGGTCTGGGTGATTCTGTGGATAGGAACATTCCTTGTCAAGTTTCTATAGATGGCTGCTTGCCTAAGCATATTGCATGTGGCTGGTGGCACACGCTGTTGCTGGCGGAAATACCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

429

Amino Acids

45.42

Weight (kDa)

6.02

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 37 - 132 2.1e-12 RCC1-like domain
WD40_RLD PF25390 252 - 424 7.6e-44 RCC1-like domain
RCC1_2 PF13540 253 - 282 6.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 270 - 318 2.3e-09 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 272 - 355 1.8e-06 Alsin RCC1-like domain
RCC1_2 PF13540 305 - 334 2.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 321 - 372 3.5e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 360 - 388 2.2e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 375 - 423 2.3e-15 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 424
AccI GTMKAC 1 cut(s) 781
AciI CCGC 5 cut(s) 165, 171, 230, 260, 1271
AclWI GGATC 3 cut(s) 232, 695, 742
AcoI YGGCCR 2 cut(s) 189, 964
AcsI RAATTY 2 cut(s) 573, 740
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 2 cut(s) 159, 712
AfaI GTAC 1 cut(s) 1108
AfiI CCNNNNNNNGG 3 cut(s) 137, 424, 585
AgsI TTSAA 2 cut(s) 520, 1056
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 3 cut(s) 280, 464, 745
AloI GAACNNNNNNTCC 2 cut(s) 460, 492
Alw21I GWGCWC 2 cut(s) 814, 1099
Alw26I GTCTC 6 cut(s) 269, 313, 353, 513, 527, 1022
AlwI GGATC 3 cut(s) 232, 695, 742
AlwNI CAGNNNCTG 4 cut(s) 362, 632, 701, 1016
Ama87I CYCGRG 1 cut(s) 403
AoxI GGCC 4 cut(s) 189, 336, 832, 964
ApaI GGGCCC 1 cut(s) 340
ApeKI GCWGC 7 cut(s) 323, 326, 629, 701, 926, 1162, 1221
ApoI RAATTY 2 cut(s) 573, 740
Asp700I GAANNNNTTC 1 cut(s) 413
AspA2I CCTAGG 1 cut(s) 1037
AspS9I GGNCC 4 cut(s) 115, 336, 337, 832
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 377, 542, 1187
AvaI CYCGRG 1 cut(s) 403
AvaII GGWCC 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 1037
BaeGI GKGCMC 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 897, 930
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 814, 1099
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 7 cut(s) 310, 313, 641, 688, 913, 1174, 1208
BccI CCATC 7 cut(s) 19, 127, 200, 956, 1118, 1140, 1211
BceAI ACGGC 1 cut(s) 951
BciT130I CCWGG 3 cut(s) 282, 466, 747
BciVI GTATCC 1 cut(s) 898
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 6 cut(s) 269, 313, 353, 513, 527, 1022
BfaI CTAG 2 cut(s) 909, 1038
BfmI CTRYAG 2 cut(s) 693, 1212
BfuI GTATCC 1 cut(s) 898
BisI GCNGC 7 cut(s) 324, 327, 630, 702, 927, 1163, 1222
BlnI CCTAGG 1 cut(s) 1037
BlsI GCNGC 7 cut(s) 325, 328, 631, 703, 928, 1164, 1223
BmcAI AGTACT 1 cut(s) 1108
Bme1390I CCNGG 4 cut(s) 72, 282, 466, 747
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 403
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 4 cut(s) 115, 336, 337, 832
BmiI GGNNCC 3 cut(s) 111, 338, 833
BmrFI CCNGG 4 cut(s) 72, 282, 466, 747
BmsI GCATC 4 cut(s) 87, 442, 659, 793
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 3 cut(s) 128, 264, 585
Bpu10I CCTNAGC 2 cut(s) 1017, 1230
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 2 cut(s) 159, 712
BsaJI CCNNGG 3 cut(s) 281, 402, 1037
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 424, 585
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 118, 318, 367
BseBI CCWGG 3 cut(s) 282, 466, 747
BseDI CCNNGG 3 cut(s) 281, 402, 1037
BseGI GGATG 3 cut(s) 238, 457, 1151
BseLI CCNNNNNNNGG 3 cut(s) 137, 424, 585
BseMII CTCAG 3 cut(s) 210, 1008, 1017
BseNI ACTGG 3 cut(s) 118, 318, 367
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 7 cut(s) 310, 313, 641, 688, 913, 1174, 1208
BseYI CCCAGC 2 cut(s) 828, 1140
BsgI GTGCAG 1 cut(s) 810
BshFI GGCC 4 cut(s) 191, 338, 834, 966
BsiHKAI GWGCWC 2 cut(s) 814, 1099
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 3 cut(s) 71, 83, 113
BslFI GGGAC 2 cut(s) 170, 298
BslI CCNNNNNNNGG 3 cut(s) 137, 424, 585
BsmAI GTCTC 6 cut(s) 269, 313, 353, 513, 527, 1022
BsmFI GGGAC 2 cut(s) 170, 298
BsnI GGCC 4 cut(s) 191, 338, 834, 966
BsoBI CYCGRG 1 cut(s) 403
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 340, 814, 1099
Bsp143I GATC 5 cut(s) 224, 500, 687, 734, 868
BspACI CCGC 5 cut(s) 165, 171, 230, 260, 1271
BspANI GGCC 4 cut(s) 191, 338, 834, 966
BspCNI CTCAG 3 cut(s) 209, 1009, 1018
BspLI GGNNCC 3 cut(s) 111, 338, 833
BspPI GGATC 3 cut(s) 232, 695, 742
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 3 cut(s) 118, 318, 367
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 3 cut(s) 281, 402, 1037
BssMI GATC 5 cut(s) 224, 500, 687, 734, 868
BssNI GRCGYC 2 cut(s) 159, 712
BssT1I CCWWGG 1 cut(s) 1037
Bst2UI CCWGG 3 cut(s) 282, 466, 747
Bst4CI ACNGT 4 cut(s) 140, 538, 697, 846
Bst6I CTCTTC 2 cut(s) 647, 1057
BstACI GRCGYC 2 cut(s) 159, 712
BstC8I GCNNGC 5 cut(s) 80, 1074, 1099, 1226, 1269
BstDEI CTNAG 5 cut(s) 196, 473, 1017, 1026, 1230
BstF5I GGATG 3 cut(s) 238, 457, 1151
BstKTI GATC 5 cut(s) 227, 503, 690, 737, 871
BstMAI GTCTC 6 cut(s) 269, 313, 353, 513, 527, 1022
BstMBI GATC 5 cut(s) 224, 500, 687, 734, 868
BstMWI GCNNNNNNNGC 4 cut(s) 197, 335, 461, 1022
BstNI CCWGG 3 cut(s) 282, 466, 747
BstNSI RCATGY 2 cut(s) 1076, 1245
BstSCI CCNGG 4 cut(s) 70, 280, 464, 745
BstSFI CTRYAG 2 cut(s) 693, 1212
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 7 cut(s) 310, 313, 641, 688, 913, 1174, 1208
BstV2I GAAGAC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 4 cut(s) 191, 338, 834, 966
BtgZI GCGATG 2 cut(s) 631, 636
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 3 cut(s) 238, 457, 1151
BtsI GCAGTG 1 cut(s) 812
BtsIMutI CAGTG 3 cut(s) 311, 812, 851
Cac8I GCNNGC 5 cut(s) 80, 1074, 1099, 1226, 1269
CaiI CAGNNNCTG 4 cut(s) 362, 632, 701, 1016
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 4 cut(s) 115, 336, 337, 832
CseI GACGC 1 cut(s) 720
Csp6I GTAC 1 cut(s) 1107
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 7 cut(s) 269, 378, 419, 677, 887, 1073, 1242
CviQI GTAC 1 cut(s) 1107
DdeI CTNAG 5 cut(s) 196, 473, 1017, 1026, 1230
DpnI GATC 5 cut(s) 226, 502, 689, 736, 870
DpnII GATC 5 cut(s) 224, 500, 687, 734, 868
EaeI YGGCCR 2 cut(s) 189, 964
Eam1104I CTCTTC 2 cut(s) 647, 1057
EarI CTCTTC 2 cut(s) 647, 1057
EciI GGCGGA 2 cut(s) 245, 1286
Eco130I CCWWGG 1 cut(s) 1037
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 3 cut(s) 280, 464, 745
EcoT14I CCWWGG 1 cut(s) 1037
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 1037
FaeI CATG 7 cut(s) 272, 381, 422, 680, 890, 1076, 1245
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 2 cut(s) 170, 298
FatI CATG 7 cut(s) 268, 377, 418, 676, 886, 1072, 1241
FauI CCCGC 1 cut(s) 253
FblI GTMKAC 1 cut(s) 781
Fnu4HI GCNGC 7 cut(s) 324, 327, 630, 702, 927, 1163, 1222
FokI GGATG 3 cut(s) 245, 464, 1158
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 7 cut(s) 324, 327, 630, 702, 927, 1163, 1222
FspBI CTAG 2 cut(s) 909, 1038
GluI GCNGC 7 cut(s) 324, 327, 630, 702, 927, 1163, 1222
GsaI CCCAGC 2 cut(s) 832, 1144
GsuI CTGGAG 3 cut(s) 128, 264, 585
HaeIII GGCC 4 cut(s) 191, 338, 834, 966
HapII CCGG 3 cut(s) 71, 83, 113
HgaI GACGC 1 cut(s) 720
Hin1I GRCGYC 2 cut(s) 159, 712
Hin1II CATG 7 cut(s) 272, 381, 422, 680, 890, 1076, 1245
HincII GTYRAC 1 cut(s) 782
HindII GTYRAC 1 cut(s) 782
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 8 cut(s) 31, 127, 146, 180, 277, 893, 1030, 1178
HpaII CCGG 3 cut(s) 71, 83, 113
HphI GGTGA 3 cut(s) 377, 542, 1187
Hpy166II GTNNAC 2 cut(s) 710, 782
Hpy188I TCNGA 3 cut(s) 126, 132, 1047
Hpy188III TCNNGA 4 cut(s) 60, 548, 732, 1061
Hpy8I GTNNAC 2 cut(s) 710, 782
HpyAV CCTTC 5 cut(s) 233, 403, 442, 579, 754
HpyCH4III ACNGT 4 cut(s) 140, 538, 697, 846
HpyCH4IV ACGT 2 cut(s) 18, 159
HpyCH4V TGCA 3 cut(s) 791, 806, 1241
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 335, 461, 1022
HpyF3I CTNAG 5 cut(s) 196, 473, 1017, 1026, 1230
HpySE526I ACGT 2 cut(s) 18, 159
Hsp92I GRCGYC 2 cut(s) 159, 712
Hsp92II CATG 7 cut(s) 272, 381, 422, 680, 890, 1076, 1245
Kzo9I GATC 5 cut(s) 224, 500, 687, 734, 868
LmnI GCTCC 3 cut(s) 109, 809, 1094
Lsp1109I GCAGC 7 cut(s) 310, 313, 641, 688, 913, 1174, 1208
LweI GCATC 4 cut(s) 87, 442, 659, 793
MaeI CTAG 2 cut(s) 909, 1038
MaeII ACGT 2 cut(s) 18, 159
MaeIII GTNAC 3 cut(s) 352, 664, 880
MalI GATC 5 cut(s) 226, 502, 689, 736, 870
MboI GATC 5 cut(s) 224, 500, 687, 734, 868
MboII GAAGA 6 cut(s) 26, 34, 510, 634, 1044, 1133
MfeI CAATTG 1 cut(s) 1001
MhlI GDGCHC 3 cut(s) 340, 814, 1099
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 5 cut(s) 520, 573, 605, 740, 1001
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 4 cut(s) 136, 271, 902, 1024
MnlI CCTC 8 cut(s) 68, 147, 229, 303, 412, 562, 678, 1012
Mox20I TGGCCA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 2 cut(s) 488, 632
MspI CCGG 3 cut(s) 71, 83, 113
MspR9I CCNGG 4 cut(s) 72, 282, 466, 747
MunI CAATTG 1 cut(s) 1001
MvaI CCWGG 3 cut(s) 282, 466, 747
MwoI GCNNNNNNNGC 4 cut(s) 197, 335, 461, 1022
NciI CCSGG 1 cut(s) 72
NdeII GATC 5 cut(s) 224, 500, 687, 734, 868
NlaIII CATG 7 cut(s) 272, 381, 422, 680, 890, 1076, 1245
NlaIV GGNNCC 3 cut(s) 111, 338, 833
NspI RCATGY 2 cut(s) 1076, 1245
PaeI GCATGC 1 cut(s) 1076
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 4 cut(s) 31, 146, 180, 1178
PflMI CCANNNNNTGG 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 7 cut(s) 325, 328, 631, 703, 928, 1164, 1223
PleI GAGTC 4 cut(s) 135, 271, 901, 1024
PpsI GAGTC 4 cut(s) 135, 271, 901, 1024
Psp6I CCWGG 3 cut(s) 280, 464, 745
PspFI CCCAGC 2 cut(s) 828, 1140
PspGI CCWGG 3 cut(s) 280, 464, 745
PspN4I GGNNCC 3 cut(s) 111, 338, 833
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 4 cut(s) 115, 336, 337, 832
PstNI CAGNNNCTG 4 cut(s) 362, 632, 701, 1016
PvuII CAGCTG 2 cut(s) 488, 632
RsaI GTAC 1 cut(s) 1108
RsaNI GTAC 1 cut(s) 1107
RseI CAYNNNNRTG 1 cut(s) 382
SalI GTCGAC 1 cut(s) 780
SatI GCNGC 7 cut(s) 324, 327, 630, 702, 927, 1163, 1222
Sau3AI GATC 5 cut(s) 224, 500, 687, 734, 868
Sau96I GGNCC 4 cut(s) 115, 336, 337, 832
ScaI AGTACT 1 cut(s) 1108
SchI GAGTC 4 cut(s) 136, 271, 902, 1024
ScrFI CCNGG 4 cut(s) 72, 282, 466, 747
SduI GDGCHC 3 cut(s) 340, 814, 1099
SfaNI GCATC 4 cut(s) 87, 442, 659, 793
SfcI CTRYAG 2 cut(s) 693, 1212
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
SphI GCATGC 1 cut(s) 1076
Sse9I AATT 5 cut(s) 520, 573, 605, 740, 1001
SsiI CCGC 5 cut(s) 165, 171, 230, 260, 1271
SspMI CTAG 2 cut(s) 909, 1038
StyD4I CCNGG 4 cut(s) 70, 280, 464, 745
StyI CCWWGG 1 cut(s) 1037
TaaI ACNGT 4 cut(s) 140, 538, 697, 846
TaiI ACGT 2 cut(s) 21, 162
TaqI TCGA 2 cut(s) 781, 960
TasI AATT 5 cut(s) 520, 573, 605, 740, 1001
TatI WGTACW 1 cut(s) 1106
TfiI GAWTC 4 cut(s) 31, 146, 180, 1178
TscAI CASTG 3 cut(s) 318, 819, 851
TseI GCWGC 7 cut(s) 323, 326, 629, 701, 926, 1162, 1221
TspDTI ATGAA 5 cut(s) 17, 468, 585, 634, 651
TspGWI ACGGA 1 cut(s) 1133
TspRI CASTG 3 cut(s) 318, 819, 851
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 573, 740
XceI RCATGY 2 cut(s) 1076, 1245
XmaJI CCTAGG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 2 cut(s) 909, 1038
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.