RchiOBHm_Chr3g0465381

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007631
Physical Location & Seq
Reverse (-)
12159533 .. 12161177
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43154

Sequence Viewer

Length: 768 bp
ATGAACGGGAACGAGGACGTGAAGATGGAAAATCGCAGAGAAGCTTTGGTGTATATGTCGGGATATTTACCGGGTGTCTCGCCGGAAAAGTCGCCGATGCTGTCTCTGGAGCCGGTCCAGTTTCCGAGTCCGATGGACGGTGGAGATTCGTGGAGGGACGTCTGCGGTGGCGGCTGTGGATTCGCTATGGCCATCTCAGAGAGTGGGAAACTGATAACTTGGGGATCGGCGGATGAGGAAGGACAGAGCTACTTGGTTGCGGGGAAGCATGGGGAGACTCCAGGGACATTTCCTCTCCCAACTGAAGTCTCACTGGTCAAGGCTGCTGCTGGTTGGGCCCATTGTGTTTCTGTTACAGAGACTGGTGAAGTATATACATGGGGGTGGAAAGAGTGTGTTCCCTCAGGGAAGGTATTCCATGATTTGGCTCTGGTGGGAAGTATTGAGAAGGATGCTACAACTACCGGGAAACTAAGTTCATTACCAGCTGAACAAGGAAGATCATTGTCTCAAGGCTTCAATTTTAGTGGTGAGACAGTATCTCATCTTGACAGCAAAAGGGCCGGAGAGGAAATTGCAAAGCGAAGGAAAACTTCGTCAGCTAAATTAGAACCTGAAAGCTCAACAGCAGCTGATGAACTCTTCATCGCATCGCCTTGTCTTGTAACAATGGGTCCTGGTGTGAGGATCACTACAGTTGCTGCTGGTGGACGCCACACTTTAGCATTATCAGGTTGTAGGAAGTACGACGCTTTGGAAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

255

Amino Acids

27.03

Weight (kDa)

5.13

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 38 - 132 9.3e-13 RCC1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 424
AciI CCGC 4 cut(s) 165, 171, 230, 260
AclWI GGATC 2 cut(s) 232, 695
AcoI YGGCCR 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 2 cut(s) 159, 712
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 2 cut(s) 137, 424
AgsI TTSAA 1 cut(s) 520
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 280, 676
AloI GAACNNNNNNTCC 2 cut(s) 460, 492
AluBI AGCT 6 cut(s) 44, 249, 488, 602, 621, 632
AluI AGCT 6 cut(s) 44, 249, 488, 602, 621, 632
Alw26I GTCTC 7 cut(s) 82, 108, 269, 313, 353, 513, 527
AlwI GGATC 2 cut(s) 232, 695
AlwNI CAGNNNCTG 3 cut(s) 362, 632, 701
AoxI GGCC 3 cut(s) 189, 336, 561
ApaI GGGCCC 1 cut(s) 340
ApeKI GCWGC 4 cut(s) 323, 326, 629, 701
Asp700I GAANNNNTTC 1 cut(s) 413
AspS9I GGNCC 5 cut(s) 115, 336, 337, 561, 674
AsuC2I CCSGG 2 cut(s) 72, 466
AsuHPI GGTGA 2 cut(s) 377, 542
AvaII GGWCC 2 cut(s) 115, 674
AxyI CCTNAGG 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 340
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 340
BbvI GCAGC 4 cut(s) 310, 313, 641, 688
BccI CCATC 3 cut(s) 19, 127, 200
BciT130I CCWGG 2 cut(s) 282, 678
BcnI CCSGG 2 cut(s) 72, 466
BcoDI GTCTC 7 cut(s) 82, 108, 269, 313, 353, 513, 527
BfmI CTRYAG 1 cut(s) 693
BisI GCNGC 5 cut(s) 172, 324, 327, 630, 702
BlsI GCNGC 5 cut(s) 173, 325, 328, 631, 703
Bme1390I CCNGG 4 cut(s) 72, 282, 466, 678
Bme18I GGWCC 2 cut(s) 115, 674
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 5 cut(s) 115, 336, 337, 561, 674
BmiI GGNNCC 3 cut(s) 111, 338, 675
BmrFI CCNGG 4 cut(s) 72, 282, 466, 678
BmsI GCATC 3 cut(s) 87, 442, 659
BpmI CTGGAG 2 cut(s) 128, 264
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 72, 466
BsaHI GRCGYC 2 cut(s) 159, 712
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 424
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 118, 318, 367
Bse21I CCTNAGG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 282, 678
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 238, 457
BseLI CCNNNNNNNGG 2 cut(s) 137, 424
BseMII CTCAG 2 cut(s) 210, 417
BseNI ACTGG 3 cut(s) 118, 318, 367
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 4 cut(s) 310, 313, 641, 688
BshFI GGCC 3 cut(s) 191, 338, 563
BsiSI CCGG 5 cut(s) 71, 83, 113, 465, 564
BslFI GGGAC 2 cut(s) 170, 298
BslI CCNNNNNNNGG 2 cut(s) 137, 424
BsmAI GTCTC 7 cut(s) 82, 108, 269, 313, 353, 513, 527
BsmFI GGGAC 2 cut(s) 170, 298
BsnI GGCC 3 cut(s) 191, 338, 563
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 224, 500, 687
BspACI CCGC 4 cut(s) 165, 171, 230, 260
BspANI GGCC 3 cut(s) 191, 338, 563
BspCNI CTCAG 2 cut(s) 209, 416
BspLI GGNNCC 3 cut(s) 111, 338, 675
BspPI GGATC 2 cut(s) 232, 695
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 3 cut(s) 118, 318, 367
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 3 cut(s) 224, 500, 687
BssNI GRCGYC 2 cut(s) 159, 712
Bst2UI CCWGG 2 cut(s) 282, 678
Bst4CI ACNGT 3 cut(s) 140, 538, 697
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 2 cut(s) 159, 712
BstDEI CTNAG 3 cut(s) 196, 403, 473
BstF5I GGATG 2 cut(s) 238, 457
BstKTI GATC 3 cut(s) 227, 503, 690
BstMAI GTCTC 7 cut(s) 82, 108, 269, 313, 353, 513, 527
BstMBI GATC 3 cut(s) 224, 500, 687
BstMWI GCNNNNNNNGC 2 cut(s) 171, 335
BstNI CCWGG 2 cut(s) 282, 678
BstSCI CCNGG 4 cut(s) 70, 280, 464, 676
BstSFI CTRYAG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 310, 313, 641, 688
Bsu36I CCTNAGG 1 cut(s) 403
BsuRI GGCC 3 cut(s) 191, 338, 563
BtgZI GCGATG 2 cut(s) 631, 636
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 238, 457
BtsIMutI CAGTG 1 cut(s) 311
CaiI CAGNNNCTG 3 cut(s) 362, 632, 701
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 5 cut(s) 115, 336, 337, 561, 674
CseI GACGC 2 cut(s) 720, 758
Csp6I GTAC 1 cut(s) 745
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 3 cut(s) 269, 378, 419
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 3 cut(s) 196, 403, 473
DpnI GATC 3 cut(s) 226, 502, 689
DpnII GATC 3 cut(s) 224, 500, 687
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
EciI GGCGGA 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 115, 674
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 2 cut(s) 280, 676
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 3 cut(s) 272, 381, 422
FaiI YATR 8 cut(s) 54, 56, 188, 270, 373, 375, 379, 420
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 2 cut(s) 170, 298
FatI CATG 3 cut(s) 268, 377, 418
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 5 cut(s) 172, 324, 327, 630, 702
FokI GGATG 2 cut(s) 245, 464
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 5 cut(s) 172, 324, 327, 630, 702
GluI GCNGC 5 cut(s) 172, 324, 327, 630, 702
GsuI CTGGAG 2 cut(s) 128, 264
HaeIII GGCC 3 cut(s) 191, 338, 563
HapII CCGG 5 cut(s) 71, 83, 113, 465, 564
HgaI GACGC 2 cut(s) 720, 758
Hin1I GRCGYC 2 cut(s) 159, 712
Hin1II CATG 3 cut(s) 272, 381, 422
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 4 cut(s) 127, 146, 180, 277
HpaII CCGG 5 cut(s) 71, 83, 113, 465, 564
HphI GGTGA 2 cut(s) 377, 542
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 3 cut(s) 126, 132, 199
Hpy188III TCNNGA 3 cut(s) 60, 107, 548
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 4 cut(s) 233, 403, 442, 579
HpyCH4III ACNGT 3 cut(s) 140, 538, 697
HpyCH4IV ACGT 2 cut(s) 18, 159
HpyCH4V TGCA 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 335
HpyF3I CTNAG 3 cut(s) 196, 403, 473
HpySE526I ACGT 2 cut(s) 18, 159
Hsp92I GRCGYC 2 cut(s) 159, 712
Hsp92II CATG 3 cut(s) 272, 381, 422
Kzo9I GATC 3 cut(s) 224, 500, 687
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 4 cut(s) 310, 313, 641, 688
LweI GCATC 3 cut(s) 87, 442, 659
MaeII ACGT 2 cut(s) 18, 159
MaeIII GTNAC 2 cut(s) 352, 664
MalI GATC 3 cut(s) 226, 502, 689
MboI GATC 3 cut(s) 224, 500, 687
MboII GAAGA 3 cut(s) 34, 510, 634
MhlI GDGCHC 1 cut(s) 340
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 3 cut(s) 520, 573, 605
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 2 cut(s) 136, 271
MnlI CCTC 7 cut(s) 7, 147, 229, 303, 412, 562, 678
Mox20I TGGCCA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 2 cut(s) 488, 632
MspI CCGG 5 cut(s) 71, 83, 113, 465, 564
MspR9I CCNGG 4 cut(s) 72, 282, 466, 678
MvaI CCWGG 2 cut(s) 282, 678
MwoI GCNNNNNNNGC 2 cut(s) 171, 335
NciI CCSGG 2 cut(s) 72, 466
NdeII GATC 3 cut(s) 224, 500, 687
NlaIII CATG 3 cut(s) 272, 381, 422
NlaIV GGNNCC 3 cut(s) 111, 338, 675
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 146, 180
PflMI CCANNNNNTGG 1 cut(s) 424
PkrI GCNGC 5 cut(s) 173, 325, 328, 631, 703
PleI GAGTC 2 cut(s) 135, 271
PpsI GAGTC 2 cut(s) 135, 271
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 280, 676
PspGI CCWGG 2 cut(s) 280, 676
PspN4I GGNNCC 3 cut(s) 111, 338, 675
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 5 cut(s) 115, 336, 337, 561, 674
PspPPI RGGWCCY 1 cut(s) 674
PstNI CAGNNNCTG 3 cut(s) 362, 632, 701
PvuII CAGCTG 2 cut(s) 488, 632
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 1 cut(s) 382
SatI GCNGC 5 cut(s) 172, 324, 327, 630, 702
Sau3AI GATC 3 cut(s) 224, 500, 687
Sau96I GGNCC 5 cut(s) 115, 336, 337, 561, 674
SchI GAGTC 2 cut(s) 136, 271
ScrFI CCNGG 4 cut(s) 72, 282, 466, 678
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 3 cut(s) 87, 442, 659
SfcI CTRYAG 1 cut(s) 693
SinI GGWCC 2 cut(s) 115, 674
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
Sse9I AATT 3 cut(s) 520, 573, 605
SsiI CCGC 4 cut(s) 165, 171, 230, 260
StyD4I CCNGG 4 cut(s) 70, 280, 464, 676
TaaI ACNGT 3 cut(s) 140, 538, 697
TaiI ACGT 2 cut(s) 21, 162
TasI AATT 3 cut(s) 520, 573, 605
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 146, 180
TscAI CASTG 1 cut(s) 318
TseI GCWGC 4 cut(s) 323, 326, 629, 701
TspDTI ATGAA 4 cut(s) 17, 468, 634, 651
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 115, 674
XmnI GAANNNNTTC 1 cut(s) 413
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.