pycom04g12260

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007631
Physical Location & Seq
Forward (+)
15233585 .. 15235630
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12260.7

Sequence Viewer

Length: 921 bp
ATGTTCCAGCACACTGGTGGCTTAAAAAATGGCAATCCGCACTCGGGGTCCAGATCGCTCCACGTGGCATCCGACGTGGCGCAAGTTGCGTCCCGAGAGAGAGAGAGAGAGAGAGAGAGATTTTGTTCTCAGATTTGTTACGCGAGAAAACGAGGTCGTTTCGGATCGGCGATGGACTGCAATGAAGGGGTAAGAGTAGGCTCGACGAAAACGGAGGAGCGGGGAGAAGCTCTGGTGTATATGTGGGGATATCTTCCCGGAGTATCGTCGGAGAAGTCTCCGACACTGTCTCTGACGCCTGTGCAGTTCCCGAATCGGATGGACGGTGGGGATTCGTGGAAGGACGTCTGCGGCGGCGGTTGCGGATTCGCCATGGCCATCTCAGAGTGTGGGAAGTTGATGACGTGGGGGTCGACGGACGACGAGGGGCAGAGCTACGTCGTTTCAGGGAAGCACGGGGAGACGCCGGAGCCTTATCGTCTCCCAAATGAGGCTTCAATACTCAAGGCTACTGCCGGTTGGGCCCATTGCGTTTCTGTTACGGAGAATGGTGAATTGTACACTTGGGGTTGGAAAGAGTGTGTCCCCTCTGGGAATCTTATCGGTGATCTGGGTATGGTGGGACGCCTTCAAAGGGATACTACCGGGAATCAAAGTTCATTACTAGTTGAACAAGTAAACTCGGTGCCTCAAGGCTTCAATCTGACTAGTGGGACAGTATCTAATCTTGACAGCAAAAGGGCCGGAGAGGACATTGCAAAGCGAAGGAAGATTTCGTCAGCTAAACCTGAATCTGAAAGCTCAACAGGTAGTGAAGAATTCTTCACTCCCTCTCCTTGTCTTGTAACTCTGGGTCCTGGAGTGAGGATCACTACTGTTGCAGCTGGCGGACGCCACACTTTAGCATTAACAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

307

Amino Acids

32.82

Weight (kDa)

6.61

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 409
AatII GACGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 685
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 413
AccII CGCG 1 cut(s) 143
AciI CCGC 7 cut(s) 38, 220, 351, 354, 357, 363, 888
AclWI GGATC 2 cut(s) 172, 875
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 818
AcvI CACGTG 1 cut(s) 64
AcyI GRCGYC 5 cut(s) 296, 345, 464, 625, 892
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 3 cut(s) 44, 490, 634
AgsI TTSAA 4 cut(s) 498, 632, 671, 700
AhlI ACTAGT 2 cut(s) 664, 707
AjiI CACGTC 2 cut(s) 76, 405
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AleI CACNNNNGTG 1 cut(s) 15
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
AluBI AGCT 5 cut(s) 230, 435, 782, 801, 884
AluI AGCT 5 cut(s) 230, 435, 782, 801, 884
Alw26I GTCTC 4 cut(s) 282, 294, 455, 485
AlwI GGATC 2 cut(s) 172, 875
Ama87I CYCGRG 2 cut(s) 43, 93
AoxI GGCC 3 cut(s) 375, 522, 741
ApaI GGGCCC 1 cut(s) 526
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 1 cut(s) 818
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 5 cut(s) 48, 522, 523, 741, 854
AsuC2I CCSGG 2 cut(s) 258, 646
AsuHPI GGTGA 2 cut(s) 563, 617
AvaI CYCGRG 2 cut(s) 43, 93
AvaII GGWCC 2 cut(s) 48, 854
BaeGI GKGCMC 1 cut(s) 526
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 685
BanII GRGCYC 1 cut(s) 526
BbrPI CACGTG 1 cut(s) 64
BbvI GCAGC 1 cut(s) 893
BccI CCATC 3 cut(s) 166, 313, 386
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 631
BcnI CCSGG 2 cut(s) 258, 646
BcoDI GTCTC 4 cut(s) 282, 294, 455, 485
BcuI ACTAGT 2 cut(s) 664, 707
BfaI CTAG 2 cut(s) 665, 708
BfuI GTATCC 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 3 cut(s) 352, 355, 882
BlsI GCNGC 3 cut(s) 353, 356, 883
Bme1390I CCNGG 3 cut(s) 258, 646, 858
Bme18I GGWCC 2 cut(s) 48, 854
BmeT110I CYCGRG 2 cut(s) 43, 93
BmgBI CACGTC 2 cut(s) 76, 405
BmgT120I GGNCC 5 cut(s) 48, 522, 523, 741, 854
BmiI GGNNCC 5 cut(s) 49, 471, 524, 687, 855
BmrFI CCNGG 3 cut(s) 258, 646, 858
BmsI GCATC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 879
BpuEI CTTGAG 2 cut(s) 488, 675
BpuMI CCSGG 2 cut(s) 258, 646
BsaAI YACGTR 1 cut(s) 64
BsaHI GRCGYC 5 cut(s) 296, 345, 464, 625, 892
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 817, 847
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 490, 634
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 3 cut(s) 187, 526, 753
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 68, 324
BseLI CCNNNNNNNGG 3 cut(s) 44, 490, 634
BseMI GCAATG 3 cut(s) 187, 526, 753
BseMII CTCAG 2 cut(s) 143, 396
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 893
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 3 cut(s) 377, 524, 743
BshNI GGYRCC 1 cut(s) 685
BsiHKCI CYCGRG 2 cut(s) 43, 93
BsiSI CCGG 5 cut(s) 258, 467, 516, 645, 744
BslFI GGGAC 4 cut(s) 76, 569, 636, 727
BslI CCNNNNNNNGG 3 cut(s) 44, 490, 634
BsmAI GTCTC 4 cut(s) 282, 294, 455, 485
BsmBI CGTCTC 2 cut(s) 455, 485
BsmFI GGGAC 4 cut(s) 76, 569, 636, 727
BsnI GGCC 3 cut(s) 377, 524, 743
BsoBI CYCGRG 2 cut(s) 43, 93
Bsp120I GGGCCC 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 526
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 4 cut(s) 53, 164, 607, 867
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 7 cut(s) 38, 220, 351, 354, 357, 363, 888
BspANI GGCC 3 cut(s) 377, 524, 743
BspCNI CTCAG 2 cut(s) 142, 395
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 5 cut(s) 49, 471, 524, 687, 855
BspPI GGATC 2 cut(s) 172, 875
BspT107I GGYRCC 1 cut(s) 685
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 3 cut(s) 187, 526, 753
BsrFI RCCGGY 1 cut(s) 515
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 4 cut(s) 53, 164, 607, 867
BssNI GRCGYC 5 cut(s) 296, 345, 464, 625, 892
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 4 cut(s) 288, 326, 718, 877
BstACI GRCGYC 5 cut(s) 296, 345, 464, 625, 892
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 886
BstDEI CTNAG 2 cut(s) 129, 382
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 68, 324
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 4 cut(s) 56, 167, 610, 870
BstMAI GTCTC 4 cut(s) 282, 294, 455, 485
BstMBI GATC 4 cut(s) 53, 164, 607, 867
BstMWI GCNNNNNNNGC 3 cut(s) 86, 360, 521
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 3 cut(s) 256, 644, 856
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 893
BstXI CCANNNNNNTGG 1 cut(s) 14
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 377, 524, 743
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 185
BtrI CACGTC 2 cut(s) 76, 405
BtsCI GGATG 2 cut(s) 68, 324
BtsIMutI CAGTG 2 cut(s) 12, 284
Cac8I GCNNGC 1 cut(s) 886
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 5 cut(s) 48, 522, 523, 741, 854
CseI GACGC 5 cut(s) 78, 304, 472, 633, 900
Csp6I GTAC 1 cut(s) 559
CviAII CATG 1 cut(s) 373
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 2 cut(s) 129, 382
DpnI GATC 4 cut(s) 55, 166, 609, 869
DpnII GATC 4 cut(s) 53, 164, 607, 867
DrdI GACNNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 375
EciI GGCGGA 1 cut(s) 903
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 526
Eco32I GATATC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 48, 854
Eco72I CACGTG 1 cut(s) 64
Eco88I CYCGRG 2 cut(s) 43, 93
EcoO109I RGGNCCY 1 cut(s) 854
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 2 cut(s) 455, 485
FaeI CATG 1 cut(s) 376
FaiI YATR 4 cut(s) 240, 242, 374, 617
FaqI GGGAC 4 cut(s) 76, 569, 636, 727
FatI CATG 1 cut(s) 372
FauI CCCGC 1 cut(s) 213
FblI GTMKAC 1 cut(s) 413
Fnu4HI GCNGC 3 cut(s) 352, 355, 882
FokI GGATG 2 cut(s) 55, 331
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 3 cut(s) 352, 355, 882
FspBI CTAG 2 cut(s) 665, 708
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 352, 355, 882
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 3 cut(s) 377, 524, 743
HapII CCGG 5 cut(s) 258, 467, 516, 645, 744
HgaI GACGC 5 cut(s) 78, 304, 472, 633, 900
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 5 cut(s) 296, 345, 464, 625, 892
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 6 cut(s) 313, 332, 366, 595, 649, 791
HpaII CCGG 5 cut(s) 258, 467, 516, 645, 744
HphI GGTGA 2 cut(s) 563, 617
Hpy166II GTNNAC 3 cut(s) 414, 561, 679
Hpy188III TCNNGA 4 cut(s) 51, 93, 310, 728
Hpy8I GTNNAC 3 cut(s) 414, 561, 679
Hpy99I CGWCG 6 cut(s) 77, 208, 271, 418, 425, 443
HpyAV CCTTC 4 cut(s) 179, 334, 638, 759
HpyCH4III ACNGT 4 cut(s) 288, 326, 718, 877
HpyCH4IV ACGT 5 cut(s) 63, 75, 345, 404, 438
HpyCH4V TGCA 4 cut(s) 180, 304, 758, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 360, 521
HpyF3I CTNAG 2 cut(s) 129, 382
HpySE526I ACGT 5 cut(s) 63, 75, 345, 404, 438
Hsp92I GRCGYC 5 cut(s) 296, 345, 464, 625, 892
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 4 cut(s) 53, 164, 607, 867
LmnI GCTCC 3 cut(s) 63, 217, 469
Lsp1109I GCAGC 1 cut(s) 893
LweI GCATC 1 cut(s) 77
MaeI CTAG 2 cut(s) 665, 708
MaeII ACGT 5 cut(s) 63, 75, 345, 404, 438
MaeIII GTNAC 3 cut(s) 137, 538, 844
MalI GATC 4 cut(s) 55, 166, 609, 869
MbiI CCGCTC 1 cut(s) 220
MboI GATC 4 cut(s) 53, 164, 607, 867
MboII GAAGA 4 cut(s) 245, 781, 814, 827
MhlI GDGCHC 1 cut(s) 526
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 554, 818
MluNI TGGCCA 1 cut(s) 377
MmeI TCCRAC 4 cut(s) 96, 249, 305, 551
MnlI CCTC 9 cut(s) 146, 208, 418, 484, 598, 699, 742, 841, 858
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 2 cut(s) 23, 908
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 5 cut(s) 258, 467, 516, 645, 744
MspR9I CCNGG 3 cut(s) 258, 646, 858
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 86, 360, 521
NciI CCSGG 2 cut(s) 258, 646
NcoI CCATGG 1 cut(s) 372
NdeII GATC 4 cut(s) 53, 164, 607, 867
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 5 cut(s) 49, 471, 524, 687, 855
OliI CACNNNNGTG 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 410
PfeI GAWTC 6 cut(s) 313, 332, 366, 595, 649, 791
PflFI GACNNNGTC 1 cut(s) 286
PfoI TCCNGGA 2 cut(s) 256, 856
PkrI GCNGC 3 cut(s) 353, 356, 883
PmaCI CACGTG 1 cut(s) 64
PmlI CACGTG 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 854
Psp5II RGGWCCY 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 856
PspCI CACGTG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 5 cut(s) 49, 471, 524, 687, 855
PspOMI GGGCCC 1 cut(s) 522
PspPI GGNCC 5 cut(s) 48, 522, 523, 741, 854
PspPPI RGGWCCY 1 cut(s) 854
PsyI GACNNNGTC 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 23, 908
SatI GCNGC 3 cut(s) 352, 355, 882
Sau3AI GATC 4 cut(s) 53, 164, 607, 867
Sau96I GGNCC 5 cut(s) 48, 522, 523, 741, 854
ScrFI CCNGG 3 cut(s) 258, 646, 858
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 1 cut(s) 77
SinI GGWCC 2 cut(s) 48, 854
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 503, 690
SmoI CTYRAG 2 cut(s) 503, 690
SpeI ACTAGT 2 cut(s) 664, 707
Sse9I AATT 2 cut(s) 554, 818
SsiI CCGC 7 cut(s) 38, 220, 351, 354, 357, 363, 888
SspMI CTAG 2 cut(s) 665, 708
StyD4I CCNGG 3 cut(s) 256, 644, 856
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 4 cut(s) 288, 326, 718, 877
TaiI ACGT 5 cut(s) 66, 78, 348, 407, 441
TaqI TCGA 2 cut(s) 203, 413
TasI AATT 2 cut(s) 554, 818
TatI WGTACW 1 cut(s) 558
TauI GCSGC 2 cut(s) 354, 357
TfiI GAWTC 6 cut(s) 313, 332, 366, 595, 649, 791
Tru1I TTAA 2 cut(s) 23, 908
Tru9I TTAA 2 cut(s) 23, 908
TscAI CASTG 2 cut(s) 19, 291
TseI GCWGC 1 cut(s) 881
TspDTI ATGAA 2 cut(s) 198, 648
TspGWI ACGGA 3 cut(s) 227, 431, 557
TspRI CASTG 2 cut(s) 19, 291
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 48, 854
XapI RAATTY 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 413
XspI CTAG 2 cut(s) 665, 708
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.